Csor.00g275140 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g275140
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	30S ribosomal protein S6 alpha, chloroplastic-like
Location	Csor_Chr15: 10205443 .. 10214093 (+)
RNA-Seq Expression	Csor.00g275140
Synteny	Csor.00g275140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCACTTCCACTCTCATCACCGCCTCTTCTTCTTCAACCTCTCTTCTCTTCCCCTTTACCCTCACACCCTCCAAACCCCTCTTTCCTCCCAACCGAATCGCCCCTTCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAGACTCTTGAATTTTCAGGTTCCTTCTTCGAAGGTGGATTTGGGGCTGAGGATGAGCCGCCGGCCCCTCCGGGGACAGGATTCGCCGATGCCCTTGAAGATAAGGAGGAGCCTCAGTGTCCTCCTGGTCTTCGGAAGTACGAGAGCATGGTGATTCTGAGGCCTGATATGTCTGAAGATGAAAGACTCGCTCTCACCCAGAAGTACGAAGAGGTAATGGCATTTCAATTGCTGGTCTCTTCCCTTTCCCCTAATTTATCTTTGGTTTCTGTGGAAAACTGAATGTTTTTTAGACTAGTTTCATTTCATTCAGTTTGTTATTGTGTTTAAATTGGTTTGAAGGTCACATGCTCTTTCTGGCCTTCCTATAGGTAACGAGTGTTGGATGATGAAAGTCTCACCTCGACTAATTTAGGGAATGATCGTGGGTTTATAAGTGAGGAATACTAACTCCATTGGTATGAGGCCTCTTAGGAAGCTCAAAGCAAAGCCATGAGAGCTTATACTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGCCTAACATGGTATCAGAGCCATGCCCTAAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAAATATCGAACAAAGAACTCCAAAAGAAAAGGAGCCGCCAAGCCCCCTCGAAGGCAGTAAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTCGATTAAGGGGAGGCGCACTTTGTTCGAGGGGAGGTGTTGGATGATGAAAGTCCCACGTCGGCTAATTTAGGGAATGATCATGGGTTTATAAGTGAGGAATACTAACTCCATTGGTACGAGGCCTTTTGGGAAACCCAAACCAAAGTCACGAGAGCTTATACTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCCTCTAACAATGAGGTGGGAGAATGGGAACACAATTGTAACTGTCCATCCCGACTCTAGTAGATATTGTCTTTTGGGAGTAGATATTATCTTTTTTCGACTTTCCTTTTGAGTTTTCTCTCAAGACTTTTAGAACGTGTATGTTAGGGAGAGGTTTTTACACCCCTTAGAAAGAATGTTTCCTTCTCCCCAACTGATGCGAGATCTTACAATTCACTTCTTCGAAGCTTATTGCACTTGTTCCTTTATCCAATCGACGTGGGATACCCTAATTCACCTCCTTTTGGGGCCCAACATCTTTGCTGGCATACTGCCTTATATCCACCTTTTCGGGGCTCAGCCTCCTCGCTGGCATATCGCTCGATGTCTAGCTTTGATGCTATTTGTAACAGCCTAAATCCACCACTAGCCGATATTGTCCTTTTTCAATTTTCTCTTTTGGACTTTCCCTCCAAGCTTTTAAAATTGGAATCCTATGAAAAAAATGTTTTGTTCGGCTGGATGTGAAATCTACTTAGACTGTTAGTTTATGCAGAACAGTTGGCTTCATGGGAATGCAGTGGCAGAATTCTAACGTAGGAGTTTTCCTGTCTGCTCTGTTTCATTGTTTGGTACCTGAGAAGAGAGAACCTCTTAGTGTGTGAAGCTTTCTAAGTCGTGTGGAGACGGTAGGGATGATATGCGTCTTATGAGTCTAGATTTGTGTAATATTAAGATTAGCAAACTTGTTTGGAATAACGATTGGAATAATGTAACAGCCCAAACCCACTACTGCTAATAGATATTGTCCGCTTTAGCCCATTATATATCGTCGTAAGTTTCACGGTTTTAAAGAGTGTTTCGTTCTTCTCTTCAATCAATGTGGGATCTCACAATCCACTCCCCTTGAGAGCCCAGCGGTCTTGCTAGTACACCGGCTAGTGTTTGGCTCTGATACCATTTGTACCAAACTCACTACTAGCAGATATTGTCCATTTTGGTCCGTTACTTATCGCCGTCAATCTCACGATTTTAAAACGTGTCTGCTAGGGAGAGGTCTCCACACCCTTATAAGGAATGATTCGTGCCCCTTTTCGACCGACGTGGGATCTCACAATCCACTCTCCTTGGGGTCCCAACATGCTCGCTGGCACACCGCTCGGTGTCTGGCCCAAATACTATTTGTAACAGCTCAAACCCACCGCTAGCAAATATTATATGTTTTAGCTCGGTATGTCTTGTCATCAGCCTCACAGTTTTAAAATGCGTCTGTTAGGGAACAATTTCCACAACCTTTATAAGGAATGTTTCGTTCACCTCTCCGTGGAATCTCACAAATAAACCCATCAACATTTTAAACACTTTGGTCTTTTGATCCCCTGCTATACAAATTTAATCCATAAGCCAAGTTTTAGTGCTTGGAAAACAGTGTAGTATTAAACAGCTTTGATGTGGAGGGCACTTGCTAGGACAGTGACAGCGTTGAGACCATCTTTATGAGAGAACATTCAAGAAAGGCAGGAAAGAGAGGAAAGTCACCAAGCATTTTTGGAGGAAAAGTTGCCTGATCCGAATAGCAACATAGCATAGTTGCCTGAATGGACAGTTTATTTCTGATAGGGAGCTGTTTGCTTGTTATATCCTCGTGATTCTTAACTTAGTCATGTCAATAGAATCTTCAAATGTCGAACAAATAAGTTGTGAGTCTCAAAGATATATCAAAAGTGACTCAAGTGTCGAACAAATGGTGTACTTTGTTCGAGGGCTTCAGAGAAGAAGCCGAGCCTCGATTAAGGTGTAACGGCCCAAGCTCTTCTTTGGGCTTTTTCCTTTCGGACTTTCCCTCAAGGTTTTTAAAACGTGTCGGCTAGGGAGAGGTTTCTACATCCTTATAAAAATGTTTCGTCCTCCTCCCCAATTGATGTGGGATTTCACAATCCACCCCTCCCCCCTTCGGAGCCTAGCATCCTCGCTGACACTCGTTCCCATCTCCAATCGATGTAGGACCCCTCAATCTACCCTCTTCGAGGCCCAGCATTCTTGCTGGCACACCACCTCGTGTCCACCCCCCTTCAAGGCTCAGCCTTCTCACTGACACATCGTCTGATGTCTGGTTCTGATACCATTTGTAACGACCCAAGCCTATCGCTAGCAAATATTGTTCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCACAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACGTCCTTATAAAGAACGTTTTGTTCTCCTCCCCAACCAATATAGAATCTCACAAAGGGGAGGCTCTATGATATACTTTGTTCGAGGGGAGAATAGTTGAGAATTGTTAGGAGAGGAATCCTACATCGGCTAATTAAGGGGTTGATCATGGGTTCATAAGGAATACATCTCCATTAGCATGAGGCCTTTTGGAGAAACCAAAAGCAAAGTCATGAGAGCTTATACTCGAAGTGGACAACATCGTACCATTATAGAGATTCATGATTCTGAACGACTAATTTAGTGTTATATACAAGCAAACGATTCTTTTGGTAAAGGGACAATCATTGGTGGGTAAGGATCAAGCTAGTTTTGTTTTGTTTTCAGCGTAGTATTTGATAAGAATTTGCCATTTTGCAGTTGCTTGTTGCTGGTGGTGGCATGTATGTGGAAGTATTCAACAGAGGGCTCGTTCCACTAGCATATAGCATCAAAAAGAAGAACAAAGCCGGTGAAACCAACACTTACATGGATGGCATCAACCTCCTCTTCACCTACTTCACAAAACCGGAATCGATGAGAGTTCTCGAGGCAGCGCTTCAAGCAGACGACGATGTCATTCGATCAATGAGTTTCAAGGTAAGGAATCGAAAATACTAGACCATTTGTTTGACACTGTAAATCAAATTTCTTGGTGTTTCACATCATGTTTTGTACAATTTGATTCAAAGCAATGGGAAAAAGATGTGTAGTTGCTGTTTGTGCTTTTCCTTTTCCGATGGAGTGCTGCTATTGTGACAACTCTTATGGCCATTTAGCCTTTATCTATAACCATCTGATTGCTGTTCTTTTTAATCCCCAAACGCTTCAAATGCTTTGAATAGGATTTTCGCGTTCGGGTTTGGGTTGTAAAGTCTTGTATATGTGCTCTTTTTAATCTTAGTACAATCTTTAGTAAATATAGTAATAGACTGAAACTAAAATTTAACTTTTTTGAACGTCCTAATCACAATCATTGAGAAACAAAAAAGTCTTTAATGATACTTTTGTTGATAATGAGAGAGTGAAATAGAGTAAGATTAGACGTTGATCTTTCATAGCCGGAAAAGCCACTCTAACTATGAACCATTTTTTTAATGATCCACGAACGACTGTCCCGTTCTACCGATCAACCAACACTCTCGCTTGAAAGTGCTTTGAAAATGCTTTTGGATTCAAAAGAAACAGAGAGAAATATGAACATGGAGTACTAGGTAGAATTTCAGGGCTGTTTTTTTTTTTTTTTTTTTAACTTTTTTTAAGTTGTGATCCAATGAATGATTAAAGTTGATATTTTTAAGTTGAAATTATTGATTAAAAATTAGTGATTGTGAAAGGAATAAACTTATTTATTTCTTAGTTGAGAAAAAAATAATTTTTTTTTTTACCCTTTTAAATAGAAAAAACAATCTTCAAACAAACTTTGGCAACACATCAAATGTTTTTTTCAATGATGAGAAGTTCAGACCGTAAATATCACTTTATGATAATGCTTTGAACATATTCTTCCCTTTATCTTTTTCATTATTTTTTTTTGTTAAAGATTTTTATTTTAATCATAAATAAAATAGAAAAAAATGCAACTCAACTCGACCATAATTTAATGGTTAAAATTCTTATTATTGTCTCAAAGCTCAATGTTTCGATCTCGTTCTCGTTCAAATCAAAATAATGCGTCTTTTTTAGTCTAAAAGTTAAATTTGAAGAGTATAATTTGATTTTTATTTTTCTCTATTCAAAACTTAATTCAAAATTTTAACTTGTAATATGTTTAAATAATTATATTAAGACCTCAATAATAAAGAAATCGTAAAATATATGGTAATTAATAAAGATCACGAAAATCAACTTGAATATAATTCAACAAGTTGTAAATTTAAGTATTATATAAATCAATAATCACCGCTTACTTAAATAAGGGATTAATGATTTTCTAAAACAAAATCTAGAAAAAAAAATTATTGCGTTATATATATATATATATTCCTTAATTTTTTAAATACTTAATAAAAAATTTCATTGCAAAATGTGTATATTTATAGAAACTAAAACAAATATATCAATATCCATAGTAATCGATATTTCAATAAATCTATAAATCAAACGGTCAATATTGATATTAAGATCAACATCTCATATATCTTTTATTAATACACAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTACTTGATTATGAACTTAAATAATTCTTATACTTTCTTTTTATTTATAGAAATTTCTATTGATATCCATATTGTGTCCATATATCAGAAAAATTGAAATCTTAACATCAATATTTTAATCTTTGTATGAATTTTATTGAATATATATATATATTATATATATATATATATTGTAGTAAAGCTAATTAAACAATTATTTCAAATTTGTTATTGGTCCTTGTATTTTAAAATTTTTTAATTTAGTTTATGTACTTTCAAATCAAAATCAAGGTTCTTGTACTTTGAAAATGACTATTTTGTTTCCTGTACTATTAAAAACTTAATTACATCTCATTCTAAATAGGAGCAAGTATCGAGTAATCAAAATCACCAATTATGAACTCAAAGGATGATTCTAGATGAACTTCCAACCCTTCATCGCTTAATTATTCCAACTTCCAACCCCTCATCACAGAAGAAAAGTAAGAACGAACAGGAACCAAAAGAGGGAAGAAAAACATCACATGCAATGGCAACAGGGAATGAATTAAGACACTGTTTGCTGATGGGACAAATTGAGAGACAACCTTAATGTTATGTAATAAAATTGTGTACTGGGTAACGTGTTCAAGTTGAATTTGAACCGAACCAGAACCCAATTTGCTGTCAATTATGAGGTTGTTTCCTTTTCTCTTCTTTTTTCCTTCCTAAAGGTGGTTAGAACCCATTTTGACCTTCTAACCAAACTGCTTTAAATCTGAAGGAACAATGATTTATAAGACAAGAACCCATCTTTCTCGAGCAGAAACAAGGAAGGTGGTTTGGCTTATGGGTTATGGGTTATGGGTTATGGAAGGAAGCTTTTGGAAGATTCAAACATGGGGGCCTCAGTGCTTGGTGAAAACAGAGCCCTCTGCTCTGCTACTAACTCAGTGGAGGGTTGTGGCTATGTCCCATCATCAAAAAGAACCCTCTCCAAATGGCCTTAATTTGCTTATATTTTCTTGACAAAGTGACATTATTTTAACAAAATCCCCTCTCCTTTTCTGACCTTAAATCCAAACAAGCCTCTCTATTCTCTCTCTTTCTCTGTATAAGCAAAGACGGAAGCTCTCTTTCCTTCTTTCTTTCTTTGTTTCTGATTTGGCTCGAGTTTTTGGGTTTGATCTTTTATAAGTTTATTGCTTTGCTTTGATGGGTCAGCCTCAAACTCCAGCCCCTCCTCATCTTTATCCTCAAGCACTTCAACTTAAGCTTTATCAGGCCTTCATATTCTCCATTCCCATCCTCTTCTCCATTATTCTCTTCCTTCTTTTCTACCTGTTTTATCTCAAGAGAAGGGCTTCCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCCCCCAATACTTCCAACTACTTCCAATACACTCACTCTCTATGTTACCACTGTAAGCAAAACTCCTCTGTTTCTTCATCTTCCTAGTTTGCTGTCTTTTTTCTTATTCTGGGTGTTTCCATTTCTGTAATTTACTTTTGGGGTCAGAGAATCTAAGGAAGATTTGAAGCTTTAGCATTCATCTTTTTTCCTTTTTTGGAAGTGGGTGTTTGATTTGCAGTGATTTTGTGCCATTTTTCTTCATCTCACTGATCTTAATTGTACAGGCTTGTCAAGTGGATTTGAAGGCTGATAATCCCGTAGACAAACTTCCTAAGATCCTATTCAATGAAGAGCTAAGGACCAGAGATTCTCTGTAAGTGTCATCATTTCTGATCGTTAAAAGATCTATGGCCCTCTGAGTTTCTTTACTGAATTTACAAAAGCTACCACAAAGATAACAGGAAGGGAATACTTTTTTCTTCTTTTTATTCGTTAAAGTACTCAGGATAGAAATCAATAGGTGCACCTACTAAAGTTAAGTAAAGGACGAGAGCCAATTCTAGATTATATCAGTCGGGTAGGCTGGATTGGGATTCTAAAAAAATCTCTATGAATTCTTCTATGCAAGAGACGTCCTCAGGTGGTTTAGCGATGTCTCCAACAGTTTTACTCGATCTCCGGATCGAATAATTTGTGTATTGAGATACCTCTACGACTCATTAGAATAGAAACTAATGTGTTAGAGAGAGATAAAAGGGGACAAAAATACAGAACAGTCAAGAGATAGAGATGGAAAGGTTTAGTGACTTAAACAGGGAGCACAAATAACATAACAAACAATGATAAAGCTAAATGCTAAACAGATTTTCTTTTCAATTTCTCTTTAATTTCTTAAAAGTGGGTTTAAACTTTTTGGTTCTATAAGTTACTTTTGTTTGTCTTCTTTTGTTTGAAAGGAGTTATTTGTAGAACATTAGGCCGACAAAATTGATATTGAAGATGAAGGGCATGTTTGGTTCTTTTTTGTACATAGTAATTATGTTTCAATATTCTTTTATTACTTTAGTAAATTAATAAATAGTTTGTAATTTAAATCCTAGTTTTAAGCACTCCTACGAGGATGGCCTTGTTTGTTTGTATCTTTTAAACCTTTATTTATTTCTCTTCACAAGGATTGAACTTTTTGTTTATAAACCTAAATTTCTCAAATAGATATTATAAAGGCCAACATGAATAGAAATTATATAATTATTGAACTAAAAGCATAAATCTAGAGTTAGAACATCGTTTCAACAAATGTATAGTATGAAAATTAGAACTTTCGAACTTTAAGAAAAGTGCATGTCCATTACCGTGGAGTATAGTTGAGGTTGGCCCCTTCTTGCAATTAAATGTCTCCAATTTGGGGGGAGAGATTGATATTTGAAGTCAACCTTATATTGCCCTTAGGATGTGTGGGGTTGAAAATGAGCACTGAAACAAAGAAAAAGTAATGATTTTCTTATCCATTTAACAGGTGTTGCGTCTGCCTAGGAGAATTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGTAAACATGTGTTTCATATTGACTGCATGAATCACTGGCTCACCTCCAACTCAACTTGTCCTCTCTGTAGATGCTCAGTCATCCCAACAACCAGGTGTTTTGATCCGCCGGTTGTTGTGTCTCCCCCACCCCCGCCACCGGCTGGCTCATCGGAGCTTCCCCCGACTTCCAACCAGACTGCAGAGATGAGATCATATTCACTCCTACATCCGCAGCTGCAACAACAACAGGAAGGATCAAGTCAGAGTATATGCTAA

mRNA sequence

ATGGCTTTCACTTCCACTCTCATCACCGCCTCTTCTTCTTCAACCTCTCTTCTCTTCCCCTTTACCCTCACACCCTCCAAACCCCTCTTTCCTCCCAACCGAATCGCCCCTTCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAGACTCTTGAATTTTCAGGTTCCTTCTTCGAAGGTGGATTTGGGGCTGAGGATGAGCCGCCGGCCCCTCCGGGGACAGGATTCGCCGATGCCCTTGAAGATAAGGAGGAGCCTCAGTGTCCTCCTGGTCTTCGGAAGTACGAGAGCATGGTGATTCTGAGGCCTGATATGTCTGAAGATGAAAGACTCGCTCTCACCCAGAAGTACGAAGAGTTGCTTGTTGCTGGTGGTGGCATGTATGTGGAAGTATTCAACAGAGGGCTCGTTCCACTAGCATATAGCATCAAAAAGAAGAACAAAGCCGGTGAAACCAACACTTACATGGATGGCATCAACCTCCTCTTCACCTACTTCACAAAACCGGAATCGATGAGAGTTCTCGAGGCAGCGCTTCAAGCAGACGACGATGTCATTCGATCAATGAGTTTCAAGCCTCAAACTCCAGCCCCTCCTCATCTTTATCCTCAAGCACTTCAACTTAAGCTTTATCAGGCCTTCATATTCTCCATTCCCATCCTCTTCTCCATTATTCTCTTCCTTCTTTTCTACCTGTTTTATCTCAAGAGAAGGGCTTCCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCCCCCAATACTTCCAACTACTTCCAATACACTCACTCTCTATGTTACCACTGCTTGTCAAGTGGATTTGAAGGCTGATAATCCCGTAGACAAACTTCCTAAGATCCTATTCAATGAAGAGCTAAGGACCAGAGATTCTCTGTGTTGCGTCTGCCTAGGAGAATTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGTAAACATGTGTTTCATATTGACTGCATGAATCACTGGCTCACCTCCAACTCAACTTGTCCTCTCTGTAGATGCTCAGTCATCCCAACAACCAGGTGTTTTGATCCGCCGGTTGTTGTGTCTCCCCCACCCCCGCCACCGGCTGGCTCATCGGAGCTTCCCCCGACTTCCAACCAGACTGCAGAGATGAGATCATATTCACTCCTACATCCGCAGCTGCAACAACAACAGGAAGGATCAAGTCAGAGTATATGCTAA

Coding sequence (CDS)

ATGGCTTTCACTTCCACTCTCATCACCGCCTCTTCTTCTTCAACCTCTCTTCTCTTCCCCTTTACCCTCACACCCTCCAAACCCCTCTTTCCTCCCAACCGAATCGCCCCTTCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAGACTCTTGAATTTTCAGGTTCCTTCTTCGAAGGTGGATTTGGGGCTGAGGATGAGCCGCCGGCCCCTCCGGGGACAGGATTCGCCGATGCCCTTGAAGATAAGGAGGAGCCTCAGTGTCCTCCTGGTCTTCGGAAGTACGAGAGCATGGTGATTCTGAGGCCTGATATGTCTGAAGATGAAAGACTCGCTCTCACCCAGAAGTACGAAGAGTTGCTTGTTGCTGGTGGTGGCATGTATGTGGAAGTATTCAACAGAGGGCTCGTTCCACTAGCATATAGCATCAAAAAGAAGAACAAAGCCGGTGAAACCAACACTTACATGGATGGCATCAACCTCCTCTTCACCTACTTCACAAAACCGGAATCGATGAGAGTTCTCGAGGCAGCGCTTCAAGCAGACGACGATGTCATTCGATCAATGAGTTTCAAGCCTCAAACTCCAGCCCCTCCTCATCTTTATCCTCAAGCACTTCAACTTAAGCTTTATCAGGCCTTCATATTCTCCATTCCCATCCTCTTCTCCATTATTCTCTTCCTTCTTTTCTACCTGTTTTATCTCAAGAGAAGGGCTTCCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCCCCCAATACTTCCAACTACTTCCAATACACTCACTCTCTATGTTACCACTGCTTGTCAAGTGGATTTGAAGGCTGATAATCCCGTAGACAAACTTCCTAAGATCCTATTCAATGAAGAGCTAAGGACCAGAGATTCTCTGTGTTGCGTCTGCCTAGGAGAATTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGTAAACATGTGTTTCATATTGACTGCATGAATCACTGGCTCACCTCCAACTCAACTTGTCCTCTCTGTAGATGCTCAGTCATCCCAACAACCAGGTGTTTTGATCCGCCGGTTGTTGTGTCTCCCCCACCCCCGCCACCGGCTGGCTCATCGGAGCTTCCCCCGACTTCCAACCAGACTGCAGAGATGAGATCATATTCACTCCTACATCCGCAGCTGCAACAACAACAGGAAGGATCAAGTCAGAGTATATGCTAA

Protein sequence

MAFTSTLITASSSSTSLLFPFTLTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGGFGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQADDDVIRSMSFKPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSELPPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC

Homology

[Close]

BLAST of Csor.00g275140 vs. ExPASy Swiss-Prot
Match: Q8VY91 (30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS6 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.1e-62
Identity = 125/184 (67.93%), Postives = 145/184 (78.80%), Query Frame = 0


Query: 12  SSSTSLLFPFTLTP----SKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGGFGAEDEP 71
           SS   L F  +L P    SKP+     I    G    VK+Q L+FSG+FFEGGFG++D+P
Sbjct: 19  SSQPLLSFSHSLRPFISKSKPMCA--SIQKRDGSQFVVKSQALDFSGTFFEGGFGSDDDP 78

Query: 72  PAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELLVAGGGMY 131
            +P G+G + ALEDK EPQCPPGLR+YE+M +LRPDMSEDERL LTQKYEELLVAGGGMY
Sbjct: 79  TSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVAGGGMY 138

Query: 132 VEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQADDDVIRS 191
           VEVFNRG++PLAYSI+KKNKAGETNTY+DGI LLFTYFTKPES+  LE  L ADDD+IRS
Sbjct: 139 VEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVLTADDDIIRS 198

[Close]

BLAST of Csor.00g275140 vs. ExPASy Swiss-Prot
Match: P82403 (30S ribosomal protein S6 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS6 PE=1 SV=3)

HSP 1 Score: 229.6 bits (584), Expect = 6.4e-59
Identity = 120/178 (67.42%), Postives = 137/178 (76.97%), Query Frame = 0


Query: 15  TSLLFPFTLTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGGFGAEDE-PPAPPGT 74
           +++ F   L P  P   P+R       G  VKA  L+FSGSFFEGGFG  DE PP+ P  
Sbjct: 30  STINFTHNLNPFNPNLKPSRHHYLSNYGPYVKAIALDFSGSFFEGGFGGLDEDPPSTPPA 89

Query: 75  GFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELLVAGGGMYVEVFNR 134
           G   A+E+K EPQCPPGLR+YE+M +LRPDM+EDERL LTQKYEELLVAGG MYVEVFNR
Sbjct: 90  GL--AVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNR 149

Query: 135 GLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQADDDVIRSMSFK 192
           G++PLAYSIK+KNKAGETN Y+DGI LLFTYFTKPES+  LEAAL  DDDVIRS SFK
Sbjct: 150 GVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFK 205

[Close]

BLAST of Csor.00g275140 vs. ExPASy Swiss-Prot
Match: Q84TF5 (Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RHA4A PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-48
Identity = 104/154 (67.53%), Postives = 125/154 (81.17%), Query Frame = 0


Query: 192 PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSF 251
           PQ+P  PHLYPQA+QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSS S      
Sbjct: 4   PQSPITPHLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPS------ 63

Query: 252 PPILPTTSNTLT-LYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 311
           P ILP +S+  T  ++ + C +D+K +   DKL  +LFNEEL TRDSLCCVCLGEFE+KE
Sbjct: 64  PMILPVSSSHQTSSHLPSVCLLDVKVELK-DKLHVVLFNEELGTRDSLCCVCLGEFELKE 123

Query: 312 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSV 345
           EL+++P CKH+FH+DC++ WL S++TCPLCR SV
Sbjct: 124 ELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSV 150

[Close]

BLAST of Csor.00g275140 vs. ExPASy Swiss-Prot
Match: Q570X5 (RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-24
Identity = 71/176 (40.34%), Postives = 105/176 (59.66%), Query Frame = 0


Query: 188 MSFKPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 247
           MS+    P        + +LKLYQAFIFS+PI F+ I+  LFYL YL+R +S LSS    
Sbjct: 1   MSYSNSNPENYSAATSSPELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMR 60

Query: 248 SSSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFE 307
           ++  P       N+L+  +      +L+     + LP ++F E     DS C VCLG+++
Sbjct: 61  TTFIP------GNSLST-IELGLSKELR-----EMLPIVVFKESFTVMDSQCSVCLGDYQ 120

Query: 308 IKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIP--TTRCFDPPV--VVSP 360
             ++L Q+P CKH FH+DC++ WLTS++TCPLCR ++IP  + +  D PV  +VSP
Sbjct: 121 PNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSP 164

[Close]

BLAST of Csor.00g275140 vs. ExPASy Swiss-Prot
Match: Q9SN28 (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-21
Identity = 70/196 (35.71%), Postives = 110/196 (56.12%), Query Frame = 0


Query: 192 PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSF 251
           P+T AP +   ++ +LKLYQAFIFS+PI F+ I+  + Y+ YL+R +++    SS     
Sbjct: 12  PETYAPSN-STESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRG 71

Query: 252 PPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEE 311
              +PT +N  T       ++ L  D   + LP +++ E    +DS C VCLG+++ +E+
Sbjct: 72  GTFVPTNNNLST------AELGLSKDIR-EMLPVVIYKESFIVKDSQCSVCLGDYQAEEK 131

Query: 312 LLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTR---CFDPPVVVSPPPPPPAGSS 371
           L Q+PSC H FH++C++ WLTS++TCPLCR S+IP            +VS       G +
Sbjct: 132 LQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGEA 191

Query: 372 ELPPTSNQTAEMRSYS 385
              P S    E  S++
Sbjct: 192 STQPDSQSATEAISHT 199

[Close]

BLAST of Csor.00g275140 vs. NCBI nr
Match: KAG6579565.1 (30S ribosomal protein S6 alpha, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 779 bits (2011), Expect = 1.15e-283
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0


Query: 1   MAFTSTLITASSSSTSLLFPFTLTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGG 60
           MAFTSTLITASSSSTSLLFPFTLTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGG
Sbjct: 1   MAFTSTLITASSSSTSLLFPFTLTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGG 60

Query: 61  FGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELL 120
           FGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELL
Sbjct: 61  FGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELL 120

Query: 121 VAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQA 180
           VAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQA
Sbjct: 121 VAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQA 180

Query: 181 DDDVIRSMSFKPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASS 240
           DDDVIRSMSFKPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASS
Sbjct: 181 DDDVIRSMSFKPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASS 240

Query: 241 LSSSSSSSSSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCC 300
           LSSSSSSSSSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCC
Sbjct: 241 LSSSSSSSSSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCC 300

Query: 301 VCLGEFEIKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPP 360
           VCLGEFEIKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPP
Sbjct: 301 VCLGEFEIKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPP 360

Query: 361 PPPPAGSSELPPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 402
           PPPPAGSSELPPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC
Sbjct: 361 PPPPAGSSELPPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 402

[Close]

BLAST of Csor.00g275140 vs. NCBI nr
Match: XP_022928899.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata])

HSP 1 Score: 409 bits (1050), Expect = 2.31e-140
Identity = 210/212 (99.06%), Postives = 211/212 (99.53%), Query Frame = 0


Query: 191 KPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS 250
           +PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS
Sbjct: 3   QPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS 62

Query: 251 FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 310
           FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE
Sbjct: 63  FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 122

Query: 311 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSEL 370
           ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSEL
Sbjct: 123 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSEL 182

Query: 371 PPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 402
           P TSNQTAEMRSYSLLHPQLQQQQEGSSQSIC
Sbjct: 183 PLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

[Close]

BLAST of Csor.00g275140 vs. NCBI nr
Match: XP_022970098.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita maxima])

HSP 1 Score: 401 bits (1030), Expect = 2.53e-137
Identity = 207/212 (97.64%), Postives = 209/212 (98.58%), Query Frame = 0


Query: 191 KPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS 250
           +PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS
Sbjct: 3   QPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS 62

Query: 251 FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 310
           FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE
Sbjct: 63  FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 122

Query: 311 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSEL 370
           ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFD PVVVSPPPPP AGSSE 
Sbjct: 123 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDLPVVVSPPPPPSAGSSEP 182

Query: 371 PPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 402
           PPTS+QTAEMRSYSLLHPQLQQQQEGSSQSIC
Sbjct: 183 PPTSDQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

[Close]

BLAST of Csor.00g275140 vs. NCBI nr
Match: XP_023550207.1 (probable E3 ubiquitin-protein ligase RHA4A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550208.1 probable E3 ubiquitin-protein ligase RHA4A isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 398 bits (1023), Expect = 3.38e-136
Identity = 207/216 (95.83%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 191 KPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS 250
           +PQTPAPPHLYPQALQLKLYQAFIFSIPIL SIILFLLFYLFYLKRRASSLSSSSSSSSS
Sbjct: 3   QPQTPAPPHLYPQALQLKLYQAFIFSIPILVSIILFLLFYLFYLKRRASSLSSSSSSSSS 62

Query: 251 ----FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEF 310
               FPPILPTTSNTLTLY+TTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEF
Sbjct: 63  SSSSFPPILPTTSNTLTLYITTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEF 122

Query: 311 EIKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAG 370
           EIKEELLQVPSCKHVFHIDC+NHWLTSNSTCPLCRCSVIPTTRCFD PVVVSPPPPPPAG
Sbjct: 123 EIKEELLQVPSCKHVFHIDCINHWLTSNSTCPLCRCSVIPTTRCFDLPVVVSPPPPPPAG 182

Query: 371 SSELPPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 402
           SSELPPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC
Sbjct: 183 SSELPPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 218

[Close]

BLAST of Csor.00g275140 vs. NCBI nr
Match: KAG7017023.1 (30S ribosomal protein S6 alpha, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 371 bits (952), Expect = 9.73e-126
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAFTSTLITASSSSTSLLFPFTLTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGG 60
           MAFTSTLITASSSSTSLLFPFTLTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGG
Sbjct: 1   MAFTSTLITASSSSTSLLFPFTLTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGG 60

Query: 61  FGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELL 120
           FGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELL
Sbjct: 61  FGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELL 120

Query: 121 VAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQA 180
           VAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQA
Sbjct: 121 VAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQA 180

Query: 181 DDDVIRSMSFK 191
           DDDVIRSMSFK
Sbjct: 181 DDDVIRSMSFK 191

[Close]

BLAST of Csor.00g275140 vs. ExPASy TrEMBL
Match: A0A6J1EM64 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111435669 PE=4 SV=1)

HSP 1 Score: 409 bits (1050), Expect = 1.12e-140
Identity = 210/212 (99.06%), Postives = 211/212 (99.53%), Query Frame = 0


Query: 191 KPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS 250
           +PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS
Sbjct: 3   QPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS 62

Query: 251 FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 310
           FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE
Sbjct: 63  FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 122

Query: 311 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSEL 370
           ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSEL
Sbjct: 123 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSEL 182

Query: 371 PPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 402
           P TSNQTAEMRSYSLLHPQLQQQQEGSSQSIC
Sbjct: 183 PLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

[Close]

BLAST of Csor.00g275140 vs. ExPASy TrEMBL
Match: A0A6J1I2V6 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111469090 PE=4 SV=1)

HSP 1 Score: 401 bits (1030), Expect = 1.23e-137
Identity = 207/212 (97.64%), Postives = 209/212 (98.58%), Query Frame = 0


Query: 191 KPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS 250
           +PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS
Sbjct: 3   QPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS 62

Query: 251 FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 310
           FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE
Sbjct: 63  FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 122

Query: 311 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSEL 370
           ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFD PVVVSPPPPP AGSSE 
Sbjct: 123 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDLPVVVSPPPPPSAGSSEP 182

Query: 371 PPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 402
           PPTS+QTAEMRSYSLLHPQLQQQQEGSSQSIC
Sbjct: 183 PPTSDQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

[Close]

BLAST of Csor.00g275140 vs. ExPASy TrEMBL
Match: A0A6J1EQE9 (30S ribosomal protein S6 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435668 PE=3 SV=1)

HSP 1 Score: 371 bits (952), Expect = 1.69e-125
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAFTSTLITASSSSTSLLFPFTLTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGG 60
           MAFTSTLITASSSSTSLLFPFTLTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGG
Sbjct: 37  MAFTSTLITASSSSTSLLFPFTLTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGG 96

Query: 61  FGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELL 120
           FGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELL
Sbjct: 97  FGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELL 156

Query: 121 VAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQA 180
           VAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQA
Sbjct: 157 VAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQA 216

Query: 181 DDDVIRSMSFK 191
           DDDVIRSMSFK
Sbjct: 217 DDDVIRSMSFK 227

[Close]

BLAST of Csor.00g275140 vs. ExPASy TrEMBL
Match: A0A6J1HZP1 (30S ribosomal protein S6 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111469094 PE=3 SV=1)

HSP 1 Score: 366 bits (940), Expect = 3.13e-124
Identity = 188/191 (98.43%), Postives = 189/191 (98.95%), Query Frame = 0


Query: 1   MAFTSTLITASSSSTSLLFPFTLTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGG 60
           MAFTSTLITASSSSTSLLFPF LTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGG
Sbjct: 1   MAFTSTLITASSSSTSLLFPFALTPSKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGG 60

Query: 61  FGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELL 120
           FGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYE+MVILRPDMSEDERLALTQKYEELL
Sbjct: 61  FGAEDEPPAPPGTGFADALEDKEEPQCPPGLRKYETMVILRPDMSEDERLALTQKYEELL 120

Query: 121 VAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQA 180
           VAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEA LQA
Sbjct: 121 VAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAVLQA 180

Query: 181 DDDVIRSMSFK 191
           DDDVIRSMSFK
Sbjct: 181 DDDVIRSMSFK 191

[Close]

BLAST of Csor.00g275140 vs. ExPASy TrEMBL
Match: A0A6J1H2A4 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111459379 PE=4 SV=1)

HSP 1 Score: 341 bits (875), Expect = 4.95e-114
Identity = 190/219 (86.76%), Postives = 195/219 (89.04%), Query Frame = 0


Query: 192 PQTPA-PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS 251
           PQTPA PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS  
Sbjct: 4   PQTPAAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSP- 63

Query: 252 FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 311
            PPILPTTSN LTLYVTTAC+VDLKADNP+DKLPKI FNEELR+RDSLCCVCLGEFEIKE
Sbjct: 64  -PPILPTTSNRLTLYVTTACRVDLKADNPMDKLPKIFFNEELRSRDSLCCVCLGEFEIKE 123

Query: 312 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVV----SPPPPPP-- 371
           ELLQVPSCKHVFHIDCMN WL SNSTCPLCRCSVIPTTRC DPPV+V    +PPPPPP  
Sbjct: 124 ELLQVPSCKHVFHIDCMNLWLASNSTCPLCRCSVIPTTRCSDPPVLVPPQLTPPPPPPPP 183

Query: 372 -AGSSELPPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 402
            A S ELP  SNQTAEM SYSL HPQLQQQ  GSSQSIC
Sbjct: 184 LAASLELPLASNQTAEMVSYSLQHPQLQQQ-IGSSQSIC 219

[Close]

BLAST of Csor.00g275140 vs. TAIR 10
Match: AT1G64510.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 241.1 bits (614), Expect = 1.5e-63
Identity = 125/184 (67.93%), Postives = 145/184 (78.80%), Query Frame = 0


Query: 12  SSSTSLLFPFTLTP----SKPLFPPNRIAPSLGLGLSVKAQTLEFSGSFFEGGFGAEDEP 71
           SS   L F  +L P    SKP+     I    G    VK+Q L+FSG+FFEGGFG++D+P
Sbjct: 19  SSQPLLSFSHSLRPFISKSKPMCA--SIQKRDGSQFVVKSQALDFSGTFFEGGFGSDDDP 78

Query: 72  PAPPGTGFADALEDKEEPQCPPGLRKYESMVILRPDMSEDERLALTQKYEELLVAGGGMY 131
            +P G+G + ALEDK EPQCPPGLR+YE+M +LRPDMSEDERL LTQKYEELLVAGGGMY
Sbjct: 79  TSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVAGGGMY 138

Query: 132 VEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTKPESMRVLEAALQADDDVIRS 191
           VEVFNRG++PLAYSI+KKNKAGETNTY+DGI LLFTYFTKPES+  LE  L ADDD+IRS
Sbjct: 139 VEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVLTADDDIIRS 198

[Close]

BLAST of Csor.00g275140 vs. TAIR 10
Match: AT4G24015.1 (RING/U-box superfamily protein )

HSP 1 Score: 195.7 bits (496), Expect = 7.3e-50
Identity = 104/154 (67.53%), Postives = 125/154 (81.17%), Query Frame = 0


Query: 192 PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSF 251
           PQ+P  PHLYPQA+QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSS S      
Sbjct: 4   PQSPITPHLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPS------ 63

Query: 252 PPILPTTSNTLT-LYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 311
           P ILP +S+  T  ++ + C +D+K +   DKL  +LFNEEL TRDSLCCVCLGEFE+KE
Sbjct: 64  PMILPVSSSHQTSSHLPSVCLLDVKVELK-DKLHVVLFNEELGTRDSLCCVCLGEFELKE 123

Query: 312 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSV 345
           EL+++P CKH+FH+DC++ WL S++TCPLCR SV
Sbjct: 124 ELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSV 150

[Close]

BLAST of Csor.00g275140 vs. TAIR 10
Match: AT1G33480.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.9 bits (289), Expect = 7.4e-26
Identity = 71/176 (40.34%), Postives = 105/176 (59.66%), Query Frame = 0


Query: 188 MSFKPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 247
           MS+    P        + +LKLYQAFIFS+PI F+ I+  LFYL YL+R +S LSS    
Sbjct: 1   MSYSNSNPENYSAATSSPELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMR 60

Query: 248 SSSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFE 307
           ++  P       N+L+  +      +L+     + LP ++F E     DS C VCLG+++
Sbjct: 61  TTFIP------GNSLST-IELGLSKELR-----EMLPIVVFKESFTVMDSQCSVCLGDYQ 120

Query: 308 IKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIP--TTRCFDPPV--VVSP 360
             ++L Q+P CKH FH+DC++ WLTS++TCPLCR ++IP  + +  D PV  +VSP
Sbjct: 121 PNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSP 164

[Close]

BLAST of Csor.00g275140 vs. TAIR 10
Match: AT4G10150.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 7.6e-23
Identity = 70/196 (35.71%), Postives = 110/196 (56.12%), Query Frame = 0


Query: 192 PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSF 251
           P+T AP +   ++ +LKLYQAFIFS+PI F+ I+  + Y+ YL+R +++    SS     
Sbjct: 12  PETYAPSN-STESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRG 71

Query: 252 PPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEE 311
              +PT +N  T       ++ L  D   + LP +++ E    +DS C VCLG+++ +E+
Sbjct: 72  GTFVPTNNNLST------AELGLSKDIR-EMLPVVIYKESFIVKDSQCSVCLGDYQAEEK 131

Query: 312 LLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTR---CFDPPVVVSPPPPPPAGSS 371
           L Q+PSC H FH++C++ WLTS++TCPLCR S+IP            +VS       G +
Sbjct: 132 LQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGEA 191

Query: 372 ELPPTSNQTAEMRSYS 385
              P S    E  S++
Sbjct: 192 STQPDSQSATEAISHT 199

[Close]

BLAST of Csor.00g275140 vs. TAIR 10
Match: AT4G10160.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-14
Identity = 62/192 (32.29%), Postives = 99/192 (51.56%), Query Frame = 0


Query: 213 FIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSFPPILPTTSNTLTLYVTTACQV 272
           FI  +PI   +I+ L+ Y+    RR S+ +   SS   F P    T+N L     +  ++
Sbjct: 24  FIVCVPICVILIVLLVLYIM---RRNSNTNVDWSSLGGFVP----TNNNL-----STAEL 83

Query: 273 DLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLT 332
            L  D   + LP +++ E     D+ C VCLG+++ +E+L Q+PSC H FH++C++ WLT
Sbjct: 84  GLSKDIR-EMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLT 143

Query: 333 SNSTCPLCRCSVIP---TTRCFDPPVVVSPPPPPPAGSSELPPTSNQTAEMRSYSLLHPQ 392
           S++TCPLCR S+IP            +VS       G +   P S    E    +++H  
Sbjct: 144 SHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQSATE----AIIH-- 196

Query: 393 LQQQQEGSSQSI 402
           +   +EG+  SI
Sbjct: 204 IDDVEEGNRDSI 196

The following BLAST results are available for this feature:

BLAST of Csor.00g275140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY91	2.1e-62	67.93	30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
P82403	6.4e-59	67.42	30S ribosomal protein S6 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RP...	[more]
Q84TF5	1.0e-48	67.53	Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q570X5	1.0e-24	40.34	RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1	[more]
Q9SN28	1.1e-21	35.71	RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1	[more]

BLAST of Csor.00g275140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579565.1	1.15e-283	100.00	30S ribosomal protein S6 alpha, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_022928899.1	2.31e-140	99.06	probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata]	[more]
XP_022970098.1	2.53e-137	97.64	probable E3 ubiquitin-protein ligase RHA4A [Cucurbita maxima]	[more]
XP_023550207.1	3.38e-136	95.83	probable E3 ubiquitin-protein ligase RHA4A isoform X1 [Cucurbita pepo subsp. pep...	[more]
KAG7017023.1	9.73e-126	100.00	30S ribosomal protein S6 alpha, chloroplastic [Cucurbita argyrosperma subsp. arg...	[more]

BLAST of Csor.00g275140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EM64	1.12e-140	99.06	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1I2V6	1.23e-137	97.64	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1EQE9	1.69e-125	100.00	30S ribosomal protein S6 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HZP1	3.13e-124	98.43	30S ribosomal protein S6 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1H2A4	4.95e-114	86.76	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Csor.00g275140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64510.1	1.5e-63	67.93	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]
AT4G24015.1	7.3e-50	67.53	RING/U-box superfamily protein	[more]
AT1G33480.1	7.4e-26	40.34	RING/U-box superfamily protein	[more]
AT4G10150.1	7.6e-23	35.71	RING/U-box superfamily protein	[more]
AT4G10160.1	2.2e-14	32.29	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 299..340 e-value: 0.0011 score: 28.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 299..341 e-value: 1.1E-11 score: 44.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 299..341 score: 12.017182
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	3.30.70.60		coord: 91..207 e-value: 3.1E-17 score: 64.4
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 267..346 e-value: 2.2E-16 score: 61.3
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 93..191 e-value: 1.2E-17 score: 64.0
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 29..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 370..402
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 360..402
None	No IPR available	PANTHER	PTHR21011:SF15	30S RIBOSOMAL PROTEIN S6 ALPHA, CHLOROPLASTIC	coord: 29..191
None	No IPR available	CDD	cd15487	bS6_chloro_cyano	coord: 91..191 e-value: 2.30519E-33 score: 118.465
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 280..355
IPR020814	Ribosomal protein S6, plastid/chloroplast	HAMAP	MF_00360	Ribosomal_S6	coord: 91..194 score: 13.79822
IPR035980	Ribosomal protein S6 superfamily	SUPERFAMILY	54995	Ribosomal protein S6	coord: 91..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g275140.m01	Csor.00g275140.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006412	translation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0061630	ubiquitin protein ligase activity