Csor.00g275040 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g275040
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	methyltransferase-like protein 17, mitochondrial
Location	Csor_Chr15: 10251829 .. 10252188 (+)
RNA-Seq Expression	Csor.00g275040
Synteny	Csor.00g275040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATCTGGTTGCACCCTCAGTGTTTAATAAAATATATGGATCTGAGACACCTTCGCATATTATCCTTACTTTGCCCATGGCAGAGGATCTAATAAAGTTGAACACACAAGATATTGTTCCATACCAAGAAGTGGATCCAGATACATATGATTCTGATGTCATGGAAACTGAAACTCTTGATGAAGATGGAGAAGAGGGAGGAGAGGAACAGGAGATTAGGCGCTTGCTGATCTTGGTGGTGGTTGGGGCAGGATTGTACTTTCACCAATTCGAAAGGGCAGGCATGTATCGATGGATATTTGTCGATCGACAAAACTGGATGGCTCGGAGGGATCGTTTGAGCGAGTCATTGTAA

mRNA sequence

ATGAAGAATCTGGTTGCACCCTCAGTGTTTAATAAAATATATGGATCTGAGACACCTTCGCATATTATCCTTACTTTGCCCATGGCAGAGGATCTAATAAAGTTGAACACACAAGATATTGTTCCATACCAAGAAGTGGATCCAGATACATATGATTCTGATGTCATGGAAACTGAAACTCTTGATGAAGATGGAGAAGAGGGAGGAGAGGAACAGGAGATTAGGCGCTTGCTGATCTTGGTGGTGGTTGGGGCAGGATTGTACTTTCACCAATTCGAAAGGGCAGGCATGTATCGATGGATATTTGTCGATCGACAAAACTGGATGGCTCGGAGGGATCGTTTGAGCGAGTCATTGTAA

Coding sequence (CDS)

ATGAAGAATCTGGTTGCACCCTCAGTGTTTAATAAAATATATGGATCTGAGACACCTTCGCATATTATCCTTACTTTGCCCATGGCAGAGGATCTAATAAAGTTGAACACACAAGATATTGTTCCATACCAAGAAGTGGATCCAGATACATATGATTCTGATGTCATGGAAACTGAAACTCTTGATGAAGATGGAGAAGAGGGAGGAGAGGAACAGGAGATTAGGCGCTTGCTGATCTTGGTGGTGGTTGGGGCAGGATTGTACTTTCACCAATTCGAAAGGGCAGGCATGTATCGATGGATATTTGTCGATCGACAAAACTGGATGGCTCGGAGGGATCGTTTGAGCGAGTCATTGTAA

Protein sequence

MKNLVAPSVFNKIYGSETPSHIILTLPMAEDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGEEGGEEQEIRRLLILVVVGAGLYFHQFERAGMYRWIFVDRQNWMARRDRLSESL

Homology

[Close]

BLAST of Csor.00g275040 vs. NCBI nr
Match: KAG6579575.1 (hypothetical protein SDJN03_24023, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238 bits (606), Expect = 6.52e-79
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MKNLVAPSVFNKIYGSETPSHIILTLPMAEDLIKLNTQDIVPYQEVDPDTYDSDVMETET 60
           MKNLVAPSVFNKIYGSETPSHIILTLPMAEDLIKLNTQDIVPYQEVDPDTYDSDVMETET
Sbjct: 1   MKNLVAPSVFNKIYGSETPSHIILTLPMAEDLIKLNTQDIVPYQEVDPDTYDSDVMETET 60

Query: 61  LDEDGEEGGEEQEIRRLLILVVVGAGLYFHQFERAGMYRWIFVDRQNWMARRDRLSESL 119
           LDEDGEEGGEEQEIRRLLILVVVGAGLYFHQFERAGMYRWIFVDRQNWMARRDRLSESL
Sbjct: 61  LDEDGEEGGEEQEIRRLLILVVVGAGLYFHQFERAGMYRWIFVDRQNWMARRDRLSESL 119

[Close]

BLAST of Csor.00g275040 vs. NCBI nr
Match: KAG7017034.1 (hypothetical protein SDJN02_22146, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.2 bits (217), Expect = 4.22e-19
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 22  IILTLPMAEDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGEEGGEEQ 72
           ++  + ++EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDG+EGGEEQ
Sbjct: 122 VLALVQLSEDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGDEGGEEQ 172

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BLAST of Csor.00g275040 vs. NCBI nr
Match: XP_023534413.1 (methyltransferase-like protein 17, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 5.30e-11
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 30  EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGEEGGEEQE 73
           EDLIKLNTQDIVPYQEVDP TYDSDV+ETE LD DGEE GEE++
Sbjct: 394 EDLIKLNTQDIVPYQEVDPVTYDSDVIETEILD-DGEEEGEEEQ 436

[Close]

BLAST of Csor.00g275040 vs. NCBI nr
Match: XP_022996188.1 (methyltransferase-like protein 17, mitochondrial [Cucurbita maxima])

HSP 1 Score: 69.7 bits (169), Expect = 5.30e-11
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 30  EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGEEGGEEQE 73
           EDLIKLNTQDIVPYQEVDP TYDSDV+ETE LD DGEE GEE++
Sbjct: 394 EDLIKLNTQDIVPYQEVDPVTYDSDVIETEILD-DGEEEGEEEQ 436

[Close]

BLAST of Csor.00g275040 vs. NCBI nr
Match: XP_022159802.1 (methyltransferase-like protein 17, mitochondrial isoform X2 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 8.68e-10
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGEEGGEEQ 72
           EDLIKLNTQDIVPYQEVDP TYDSDV+ETE  D DGEE  EEQ
Sbjct: 394 EDLIKLNTQDIVPYQEVDPVTYDSDVIETENFD-DGEEEEEEQ 435

[Close]

BLAST of Csor.00g275040 vs. ExPASy TrEMBL
Match: A0A6J1KA52 (methyltransferase-like protein 17, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111491494 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.56e-11
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 30  EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGEEGGEEQE 73
           EDLIKLNTQDIVPYQEVDP TYDSDV+ETE LD DGEE GEE++
Sbjct: 394 EDLIKLNTQDIVPYQEVDPVTYDSDVIETEILD-DGEEEGEEEQ 436

[Close]

BLAST of Csor.00g275040 vs. ExPASy TrEMBL
Match: A0A6J1E0U3 (methyltransferase-like protein 17, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026114 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.20e-10
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGEEGGEEQ 72
           EDLIKLNTQDIVPYQEVDP TYDSDV+ETE  D DGEE  EEQ
Sbjct: 394 EDLIKLNTQDIVPYQEVDPVTYDSDVIETENFD-DGEEEEEEQ 435

[Close]

BLAST of Csor.00g275040 vs. ExPASy TrEMBL
Match: A0A6J1E517 (methyltransferase-like protein 17, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111026114 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.20e-10
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGEEGGEEQ 72
           EDLIKLNTQDIVPYQEVDP TYDSDV+ETE  D DGEE  EEQ
Sbjct: 395 EDLIKLNTQDIVPYQEVDPVTYDSDVIETENFD-DGEEEEEEQ 436

[Close]

BLAST of Csor.00g275040 vs. ExPASy TrEMBL
Match: A0A6J1H3Q3 (methyltransferase-like protein 17, mitochondrial isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459357 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.94e-09
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 30  EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGEEGGEEQE 73
           EDLIKLNTQ IVPYQEVDP TYDSDV+ETE LD DGEE GEE++
Sbjct: 339 EDLIKLNTQ-IVPYQEVDPVTYDSDVIETEILD-DGEEEGEEEQ 380

[Close]

BLAST of Csor.00g275040 vs. ExPASy TrEMBL
Match: A0A6J1H1V3 (methyltransferase-like protein 17, mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459357 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.04e-09
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 30  EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGEEGGEEQE 73
           EDLIKLNTQ IVPYQEVDP TYDSDV+ETE LD DGEE GEE++
Sbjct: 394 EDLIKLNTQ-IVPYQEVDPVTYDSDVIETEILD-DGEEEGEEEQ 435

The following BLAST results are available for this feature:

BLAST of Csor.00g275040 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g275040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579575.1	6.52e-79	100.00	hypothetical protein SDJN03_24023, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017034.1	4.22e-19	82.35	hypothetical protein SDJN02_22146, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023534413.1	5.30e-11	84.09	methyltransferase-like protein 17, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022996188.1	5.30e-11	84.09	methyltransferase-like protein 17, mitochondrial [Cucurbita maxima]	[more]
XP_022159802.1	8.68e-10	83.72	methyltransferase-like protein 17, mitochondrial isoform X2 [Momordica charantia...	[more]

BLAST of Csor.00g275040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KA52	2.56e-11	84.09	methyltransferase-like protein 17, mitochondrial OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1E0U3	4.20e-10	83.72	methyltransferase-like protein 17, mitochondrial isoform X2 OS=Momordica charant...	[more]
A0A6J1E517	4.20e-10	83.72	methyltransferase-like protein 17, mitochondrial isoform X1 OS=Momordica charant...	[more]
A0A6J1H3Q3	4.94e-09	81.82	methyltransferase-like protein 17, mitochondrial isoform X2 OS=Cucurbita moschat...	[more]
A0A6J1H1V3	5.04e-09	81.82	methyltransferase-like protein 17, mitochondrial isoform X1 OS=Cucurbita moschat...	[more]

BLAST of Csor.00g275040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g275040.m01	Csor.00g275040.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0008168	methyltransferase activity