Csor.00g274640 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g274640
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RING-type E3 ubiquitin transferase
Location	Csor_Chr15: 10482910 .. 10483467 (+)
RNA-Seq Expression	Csor.00g274640
Synteny	Csor.00g274640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCCGACTCCTTTAGACGCCGACGACACCGTCAGCTTCCAGCCACCACCACCACCGCCACCGTGCCACGACCTCCGCGCTTGTACTTGGAGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCTGCTGTCGTAGTCATCATCCTTCTCTGCGGTCTCATCTGCTCTCTAGCTCTCAACACCGCCATTCGCTGCTTTCTCCGCCGCCGCGGAGACGCCGATGAAAACCCAAGTGATACCCGGCAGGAGGAGCTTCGTGATGAGACGAAGCCGACGTTAGTGGACAAATTGAAGATGGCTCCGGCGTTGGTGTTCTCGGCGGAGATCAAGCCGAAACTCGCCGGTGCGGAGGCGGAGTGTACGATTTGTTTGACGGAATTCTCGGAAGGGGAAGAGATTCGTGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAATGTATTCAAACATGGCTGATTTTGCATTCTTCTTGTCCGACTTGCCGCTGTAGCTACCTCCCTCCGTCACCGTCGTCCGCCGCACACGGCGGCGACGGCGACGGCGACCCCTGA

mRNA sequence

ATGCGGCCGACTCCTTTAGACGCCGACGACACCGTCAGCTTCCAGCCACCACCACCACCGCCACCGTGCCACGACCTCCGCGCTTGTACTTGGAGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCTGCTGTCGTAGTCATCATCCTTCTCTGCGGTCTCATCTGCTCTCTAGCTCTCAACACCGCCATTCGCTGCTTTCTCCGCCGCCGCGGAGACGCCGATGAAAACCCAAGTGATACCCGGCAGGAGGAGCTTCGTGATGAGACGAAGCCGACGTTAGTGGACAAATTGAAGATGGCTCCGGCGTTGGTGTTCTCGGCGGAGATCAAGCCGAAACTCGCCGGTGCGGAGGCGGAGTGTACGATTTGTTTGACGGAATTCTCGGAAGGGGAAGAGATTCGTGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAATGTATTCAAACATGGCTGATTTTGCATTCTTCTTGTCCGACTTGCCGCTGTAGCTACCTCCCTCCGTCACCGTCGTCCGCCGCACACGGCGGCGACGGCGACGGCGACCCCTGA

Coding sequence (CDS)

ATGCGGCCGACTCCTTTAGACGCCGACGACACCGTCAGCTTCCAGCCACCACCACCACCGCCACCGTGCCACGACCTCCGCGCTTGTACTTGGAGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCTGCTGTCGTAGTCATCATCCTTCTCTGCGGTCTCATCTGCTCTCTAGCTCTCAACACCGCCATTCGCTGCTTTCTCCGCCGCCGCGGAGACGCCGATGAAAACCCAAGTGATACCCGGCAGGAGGAGCTTCGTGATGAGACGAAGCCGACGTTAGTGGACAAATTGAAGATGGCTCCGGCGTTGGTGTTCTCGGCGGAGATCAAGCCGAAACTCGCCGGTGCGGAGGCGGAGTGTACGATTTGTTTGACGGAATTCTCGGAAGGGGAAGAGATTCGTGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAATGTATTCAAACATGGCTGATTTTGCATTCTTCTTGTCCGACTTGCCGCTGTAGCTACCTCCCTCCGTCACCGTCGTCCGCCGCACACGGCGGCGACGGCGACGGCGACCCCTGA

Protein sequence

MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLALNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGDGDGDP

Homology

[Close]

BLAST of Csor.00g274640 vs. ExPASy Swiss-Prot
Match: Q9FGJ6 (RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.4e-31
Identity = 71/146 (48.63%), Postives = 96/146 (65.75%), Query Frame = 0


Query: 21  PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLALNTAIRCFLRRRGDADENPS 80
           P C+    C W+PYSNS DF ANA+V++I+++  LIC+L+L  AIRCFLR   + +++  
Sbjct: 18  PTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDDHK 77

Query: 81  DTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEAECTICLTEFSEGEEIRVLAI 140
                E    + PT        P LV+S+++  +LAGAEAEC ICL+EF +GE I+VL  
Sbjct: 78  P--DPEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLEK 137

Query: 141 CKHGFHVQCIQTWLILHSSCPTCRCS 167
           C+HGFHV+CI  WL   SSCPTCR S
Sbjct: 138 CQHGFHVKCIHKWLSTRSSCPTCRTS 151

[Close]

BLAST of Csor.00g274640 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.0e-24
Identity = 63/148 (42.57%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 36  NSRDFEANAAVVVIILLCGLICSLALNTAIRCFLR--RRGDADENPSDTRQEELRDETKP 95
           N    + +  +++  LLC LIC+L +N+ +RC LR  RR   +E+P DT     +   K 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKR 92

Query: 96  TLVDKLKMAPALVFSAEIKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTW 155
                LK+ P   +S E+K K      EC ICL +F EGE +RVL  C HGFHV+CI TW
Sbjct: 93  A----LKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTW 152

Query: 156 LILHSSCPTCRCSYLP-PSPSSAAHGGD 181
           L+ HSSCPTCR S L   +P++ +  GD
Sbjct: 153 LLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of Csor.00g274640 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-21
Identity = 63/147 (42.86%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 36  NSRDFEANAAVVVIILLCGLICSLALNTAIRCFLR--RRGDADENPSD--TRQEELRDET 95
           N   F+ N  +++  LLC LIC+L+LN+A+RC LR  RR  +D+  S+       L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 96  KPTLVDK--LKMAPALVFSAEIKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQC 155
             T + K  LK  P  ++ + I    A    EC ICL +F +GE++RVL  C HGFHV+C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 156 IQTWLILHSSCPTCRCSYLPPSPSSAA 177
           I TWL+  SSCPTCR S L   PS  A
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPSPMA 168

[Close]

BLAST of Csor.00g274640 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-20
Identity = 61/152 (40.13%), Postives = 82/152 (53.95%), Query Frame = 0


Query: 15  QPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLALNTAIRCFLRRRGD 74
           Q P P P           PY    +F+AN  +V+ +LLC L+CSL LN+ IRC LR    
Sbjct: 37  QSPTPAP----------SPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR---C 96

Query: 75  ADENPSDTRQEELRDETKPTLVDK--LKMAPALVFSAEIKPKLAGAEAECTICLTEFSEG 134
           ++  PS+   +        T V +  LK    + +S E+   L G + EC ICL+EF   
Sbjct: 97  SNLVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTEL--NLPGLDTECAICLSEFVAE 156

Query: 135 EEIRVLAICKHGFHVQCIQTWLILHSSCPTCR 165
           E +++L  C HGFHV+CI  WL  HSSCPTCR
Sbjct: 157 ERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCR 173

[Close]

BLAST of Csor.00g274640 vs. ExPASy Swiss-Prot
Match: Q8LC69 (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 3.9e-19
Identity = 58/152 (38.16%), Postives = 74/152 (48.68%), Query Frame = 0


Query: 33  PYSNSRDFEANAAVVVIILLCGLICSLALNTAIRCFLRRRGDADENPSDTRQEELRDETK 92
           P   S  F ++  +++ +LLC L C + L    RC   RR  +      T    +    K
Sbjct: 17  PAEASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANK 76

Query: 93  PTLVDKLKMAPALVFSAEIKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQT 152
                 L+  P L +S +  P  A    EC ICLTEF+ G+E+RVL  C HGFHV CI T
Sbjct: 77  GLKKKVLRSLPKLTYSPDSPP--AEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDT 136

Query: 153 WLILHSSCPTCR----------CSYLPPSPSS 175
           WL  HSSCP+CR          C  LP S SS
Sbjct: 137 WLGSHSSCPSCRQILVVTRCHKCGGLPGSSSS 166

[Close]

BLAST of Csor.00g274640 vs. NCBI nr
Match: XP_022928967.1 (RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 380 bits (977), Expect = 2.46e-133
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60
           MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120
           LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

Query: 181 GDGDP 185
           GDGDP
Sbjct: 181 GDGDP 185

[Close]

BLAST of Csor.00g274640 vs. NCBI nr
Match: KAG7017072.1 (RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 378 bits (971), Expect = 2.17e-132
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60
           MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120
           LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

Query: 181 GDGD 184
           GDGD
Sbjct: 181 GDGD 184

[Close]

BLAST of Csor.00g274640 vs. NCBI nr
Match: XP_023520546.1 (RING-H2 finger protein ATL79-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365 bits (937), Expect = 3.44e-127
Identity = 182/188 (96.81%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MRPTPLDADDTVSFQPPPPPPP-CHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSL 60
           MRPTPLDADDTVSFQPPPPPPP CHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSL
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSL 60

Query: 61  ALNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAE 120
           ALNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAE+KPKLAGAE
Sbjct: 61  ALNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEMKPKLAGAE 120

Query: 121 AECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGG 180
           AECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRC YLPPSPS AAHGG
Sbjct: 121 AECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCIYLPPSPSVAAHGG 180

Query: 181 D--GDGDP 185
           D  GDGDP
Sbjct: 181 DDGGDGDP 188

[Close]

BLAST of Csor.00g274640 vs. NCBI nr
Match: XP_022970108.1 (RING-H2 finger protein ATL79-like [Cucurbita maxima])

HSP 1 Score: 361 bits (927), Expect = 8.99e-126
Identity = 175/180 (97.22%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60
           MRPTPLDADDTVS++PP PPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA
Sbjct: 1   MRPTPLDADDTVSYRPPSPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120
           LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFS E+KPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSEEMKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

[Close]

BLAST of Csor.00g274640 vs. NCBI nr
Match: XP_038875287.1 (RING-H2 finger protein ATL79-like [Benincasa hispida])

HSP 1 Score: 341 bits (875), Expect = 8.48e-118
Identity = 168/185 (90.81%), Postives = 176/185 (95.14%), Query Frame = 0


Query: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60
           MRPTPLDADDTV+FQPPP PP CHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVAFQPPPSPP-CHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60

Query: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120
           LNTAIRCFLRRRG AD++PSD+RQEEL+DETKPTLVDKLKMAPALVFSAE KPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSAETKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180
           ECTICLTEF EGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSP S+  GGD
Sbjct: 121 ECTICLTEFLEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPPSSVSGGD 180

Query: 181 GDGDP 185
           GDG+P
Sbjct: 181 GDGNP 184

[Close]

BLAST of Csor.00g274640 vs. ExPASy TrEMBL
Match: A0A6J1ELF7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709 PE=3 SV=1)

HSP 1 Score: 380 bits (977), Expect = 1.19e-133
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60
           MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120
           LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

Query: 181 GDGDP 185
           GDGDP
Sbjct: 181 GDGDP 185

[Close]

BLAST of Csor.00g274640 vs. ExPASy TrEMBL
Match: A0A6J1I2W6 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469099 PE=3 SV=1)

HSP 1 Score: 361 bits (927), Expect = 4.35e-126
Identity = 175/180 (97.22%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60
           MRPTPLDADDTVS++PP PPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA
Sbjct: 1   MRPTPLDADDTVSYRPPSPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120
           LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFS E+KPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSEEMKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

[Close]

BLAST of Csor.00g274640 vs. ExPASy TrEMBL
Match: A0A0A0KNJ7 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE=3 SV=1)

HSP 1 Score: 327 bits (838), Expect = 1.67e-112
Identity = 161/182 (88.46%), Postives = 173/182 (95.05%), Query Frame = 0


Query: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60
           MRPTPLDADDTV FQPPP PP CHDLRACTWRPYS+SRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVRFQPPPSPP-CHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALA 60

Query: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120
           LNTAIRCFLRRRG +D++ SD+RQEEL +ETKPTL+DKLKMAPALVFSAE+KPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180
           ECTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCR SYLPPSPSS+A GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGD 180

Query: 181 GD 182
           G+
Sbjct: 181 GN 181

[Close]

BLAST of Csor.00g274640 vs. ExPASy TrEMBL
Match: A0A5D3C3S3 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001240 PE=3 SV=1)

HSP 1 Score: 327 bits (837), Expect = 2.38e-112
Identity = 160/182 (87.91%), Postives = 173/182 (95.05%), Query Frame = 0


Query: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60
           MRPTPLDAD+TV FQPPP PP CHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADETVRFQPPPSPP-CHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60

Query: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120
           LNTAIRCFLRRRG +D++ +D+RQEEL++ETKPTLV+KLKMAPALVFSAE+KPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGD 180

Query: 181 GD 182
           G+
Sbjct: 181 GN 181

[Close]

BLAST of Csor.00g274640 vs. ExPASy TrEMBL
Match: A0A1S3AU49 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 SV=1)

HSP 1 Score: 327 bits (837), Expect = 2.38e-112
Identity = 160/182 (87.91%), Postives = 173/182 (95.05%), Query Frame = 0


Query: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60
           MRPTPLDAD+TV FQPPP PP CHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADETVRFQPPPSPP-CHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60

Query: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120
           LNTAIRCFLRRRG +D++ +D+RQEEL++ETKPTLV+KLKMAPALVFSAE+KPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGD 180

Query: 181 GD 182
           G+
Sbjct: 181 GN 181

[Close]

BLAST of Csor.00g274640 vs. TAIR 10
Match: AT5G47610.1 (RING/U-box superfamily protein )

HSP 1 Score: 136.0 bits (341), Expect = 3.2e-32
Identity = 71/146 (48.63%), Postives = 96/146 (65.75%), Query Frame = 0


Query: 21  PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLALNTAIRCFLRRRGDADENPS 80
           P C+    C W+PYSNS DF ANA+V++I+++  LIC+L+L  AIRCFLR   + +++  
Sbjct: 18  PTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDDHK 77

Query: 81  DTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEAECTICLTEFSEGEEIRVLAI 140
                E    + PT        P LV+S+++  +LAGAEAEC ICL+EF +GE I+VL  
Sbjct: 78  P--DPEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLEK 137

Query: 141 CKHGFHVQCIQTWLILHSSCPTCRCS 167
           C+HGFHV+CI  WL   SSCPTCR S
Sbjct: 138 CQHGFHVKCIHKWLSTRSSCPTCRTS 151

[Close]

BLAST of Csor.00g274640 vs. TAIR 10
Match: AT4G17245.1 (RING/U-box superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-28
Identity = 74/162 (45.68%), Postives = 90/162 (55.56%), Query Frame = 0


Query: 12  VSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLALNTAIRCFLRR 71
           +S  P P         +C W+PYS+S DF ANA +++IIL C  IC L+L+ AIRC LR 
Sbjct: 5   LSSDPQPELTSTCTSHSCGWKPYSHSNDFAANAFLLLIILFCSFICVLSLHAAIRCCLRP 64

Query: 72  RGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEAECTICLTEFSE 131
                  P D   E    +  PTLV     +P L         LAG EAEC ICL+EF +
Sbjct: 65  VLQHVPKP-DPDLEATHPDAPPTLV----YSPGL--------NLAGNEAECIICLSEFQD 124

Query: 132 GEEIRVLAICKHGFHVQCIQTWL-ILHSSCPTCRCSYLPPSP 173
           G+ +RVL  CKHGFHV CIQ WL   HSSCPTCR +     P
Sbjct: 125 GDTLRVLERCKHGFHVYCIQKWLSSSHSSCPTCRTNIFSSPP 153

[Close]

BLAST of Csor.00g274640 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 6.4e-25
Identity = 63/148 (42.57%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 36  NSRDFEANAAVVVIILLCGLICSLALNTAIRCFLR--RRGDADENPSDTRQEELRDETKP 95
           N    + +  +++  LLC LIC+L +N+ +RC LR  RR   +E+P DT     +   K 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKR 92

Query: 96  TLVDKLKMAPALVFSAEIKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTW 155
                LK+ P   +S E+K K      EC ICL +F EGE +RVL  C HGFHV+CI TW
Sbjct: 93  A----LKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTW 152

Query: 156 LILHSSCPTCRCSYLP-PSPSSAAHGGD 181
           L+ HSSCPTCR S L   +P++ +  GD
Sbjct: 153 LLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of Csor.00g274640 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-22
Identity = 63/147 (42.86%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 36  NSRDFEANAAVVVIILLCGLICSLALNTAIRCFLR--RRGDADENPSD--TRQEELRDET 95
           N   F+ N  +++  LLC LIC+L+LN+A+RC LR  RR  +D+  S+       L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 96  KPTLVDK--LKMAPALVFSAEIKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQC 155
             T + K  LK  P  ++ + I    A    EC ICL +F +GE++RVL  C HGFHV+C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 156 IQTWLILHSSCPTCRCSYLPPSPSSAA 177
           I TWL+  SSCPTCR S L   PS  A
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPSPMA 168

[Close]

BLAST of Csor.00g274640 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21
Identity = 61/152 (40.13%), Postives = 82/152 (53.95%), Query Frame = 0


Query: 15  QPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLALNTAIRCFLRRRGD 74
           Q P P P           PY    +F+AN  +V+ +LLC L+CSL LN+ IRC LR    
Sbjct: 37  QSPTPAP----------SPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR---C 96

Query: 75  ADENPSDTRQEELRDETKPTLVDK--LKMAPALVFSAEIKPKLAGAEAECTICLTEFSEG 134
           ++  PS+   +        T V +  LK    + +S E+   L G + EC ICL+EF   
Sbjct: 97  SNLVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTEL--NLPGLDTECAICLSEFVAE 156

Query: 135 EEIRVLAICKHGFHVQCIQTWLILHSSCPTCR 165
           E +++L  C HGFHV+CI  WL  HSSCPTCR
Sbjct: 157 ERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCR 173

The following BLAST results are available for this feature:

BLAST of Csor.00g274640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGJ6	4.4e-31	48.63	RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1	[more]
Q9FLC6	9.0e-24	42.57	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9SG96	1.4e-21	42.86	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q6NQG7	1.6e-20	40.13	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q8LC69	3.9e-19	38.16	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2	[more]

BLAST of Csor.00g274640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928967.1	2.46e-133	100.00	RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 fin...	[more]
KAG7017072.1	2.17e-132	100.00	RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023520546.1	3.44e-127	96.81	RING-H2 finger protein ATL79-like [Cucurbita pepo subsp. pepo]	[more]
XP_022970108.1	8.99e-126	97.22	RING-H2 finger protein ATL79-like [Cucurbita maxima]	[more]
XP_038875287.1	8.48e-118	90.81	RING-H2 finger protein ATL79-like [Benincasa hispida]	[more]

BLAST of Csor.00g274640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ELF7	1.19e-133	100.00	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709...	[more]
A0A6J1I2W6	4.35e-126	97.22	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469099 P...	[more]
A0A0A0KNJ7	1.67e-112	88.46	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE...	[more]
A0A5D3C3S3	2.38e-112	87.91	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3AU49	2.38e-112	87.91	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 ...	[more]

BLAST of Csor.00g274640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47610.1	3.2e-32	48.63	RING/U-box superfamily protein	[more]
AT4G17245.1	4.7e-28	45.68	RING/U-box superfamily protein	[more]
AT5G05280.1	6.4e-25	42.57	RING/U-box superfamily protein	[more]
AT3G10910.1	1.0e-22	42.86	RING/U-box superfamily protein	[more]
AT1G49230.1	1.1e-21	40.13	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 122..163 e-value: 1.2E-5 score: 34.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 121..164 e-value: 2.4E-12 score: 47.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 122..164 score: 12.090947
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 79..169 e-value: 4.2E-19 score: 70.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR46905:SF1	RING-H2 FINGER PROTEIN ATL79-LIKE	coord: 14..175
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 121..170
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 14..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g274640.m01	Csor.00g274640.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity