Csor.00g274370 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g274370
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S ribosomal protein L13
Location	Csor_Chr15: 10630836 .. 10631939 (-)
RNA-Seq Expression	Csor.00g274370
Synteny	Csor.00g274370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCATAACAATGTTATCCCTAGTGGGCACTTTAGGAAGCACTGGCAAAATTATGTCAGAACTTGGTTCAACCAGCCTGCTCGCAAAACAAGGAGAAGGAATGGTGAGGCCCTGTGTTTTCTGCTAGGTCATCCATGGCTATATATTGTATTGTAGTGTATTGTTCTAACAGATTTTGATTGTTCTTCTGTTAATCTTCGCTAGCCCGTCAAGAAAAGGCTGTGAAGAATTTCCCTAGGCCGACTGCTGGACCTCTTCGGCCTATTGTTCATGGACAGACGTTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAGTTGAAGGTGGGATTATTTTTCTGATTTTGGAGTTTTTTCGATGATTTGAGCATATTTAACTCAGTTTATTTTGGCTGTTGTTTTATATTTTGGACAAATGGAATGTTTCAAAGCATCTTCATTTGTTGATGCATCTATACGGTTGTGAATGTCTATGAATATTTATCTTTTTTAGAGTGTACTAGAGTAAGTAATATTTTCAAGAACACGTTTGCAAGTTTAATGATATTGTTTGGATTCTATAGAGATCATTCATTGGTTGCTACCCATCAAGATGATTGACAATTTTTTCATAAAACCAGGCAGCTGGAATTCCGAAGAAATATGCACCAACAATCGGCATTGCAGTCGATCATCGTCGCAGAAATCGTTCCTTAGAGAGTCTTCAAGCTAATGTACAGAGGTTAAAGACTTATAAGGCCAAGGTGGTCGTTTTCCCACGACGCGCCCGCAAGTTCAAGGTAGCCTCCATGCTCCTACTGCAAAAGCAATACAATTCATGTGTTAATGCCTCGTCTCGATTCATTTACATTATCTGTTGTTGTAGGCTGGCGACTCTACTCCTGAGGAACTAGCAACTGCCACACAGGTCCAGGGCCCTTACATGTCAATTGGACTTGAGAAGCCATCAGTTGAGCTTGTGAAGATCACAGAAGACTTGAAATCCTTCAAGGCTTATGACAAGCTTCGTATTGAGAGAACGAATGCCCGCCATGTCGGTGCTCGGTTGAAGAGGGCTGCCGAGGCAGAGAAGGAAGAGAAGAAGTAA

mRNA sequence

ATGAAGCATAACAATGTTATCCCTAGTGGGCACTTTAGGAAGCACTGGCAAAATTATGTCAGAACTTGGTTCAACCAGCCTGCTCGCAAAACAAGGAGAAGGAATGCCCGTCAAGAAAAGGCTGTGAAGAATTTCCCTAGGCCGACTGCTGGACCTCTTCGGCCTATTGTTCATGGACAGACGTTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAGTTGAAGGCAGCTGGAATTCCGAAGAAATATGCACCAACAATCGGCATTGCAGTCGATCATCGTCGCAGAAATCGTTCCTTAGAGAGTCTTCAAGCTAATGTACAGAGGTTAAAGACTTATAAGGCCAAGGTGGTCGTTTTCCCACGACGCGCCCGCAAGTTCAAGGCTGGCGACTCTACTCCTGAGGAACTAGCAACTGCCACACAGGTCCAGGGCCCTTACATGTCAATTGGACTTGAGAAGCCATCAGTTGAGCTTGTGAAGATCACAGAAGACTTGAAATCCTTCAAGGCTTATGACAAGCTTCGTATTGAGAGAACGAATGCCCGCCATGTCGGTGCTCGGTTGAAGAGGGCTGCCGAGGCAGAGAAGGAAGAGAAGAAGTAA

Coding sequence (CDS)

ATGAAGCATAACAATGTTATCCCTAGTGGGCACTTTAGGAAGCACTGGCAAAATTATGTCAGAACTTGGTTCAACCAGCCTGCTCGCAAAACAAGGAGAAGGAATGCCCGTCAAGAAAAGGCTGTGAAGAATTTCCCTAGGCCGACTGCTGGACCTCTTCGGCCTATTGTTCATGGACAGACGTTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAGTTGAAGGCAGCTGGAATTCCGAAGAAATATGCACCAACAATCGGCATTGCAGTCGATCATCGTCGCAGAAATCGTTCCTTAGAGAGTCTTCAAGCTAATGTACAGAGGTTAAAGACTTATAAGGCCAAGGTGGTCGTTTTCCCACGACGCGCCCGCAAGTTCAAGGCTGGCGACTCTACTCCTGAGGAACTAGCAACTGCCACACAGGTCCAGGGCCCTTACATGTCAATTGGACTTGAGAAGCCATCAGTTGAGCTTGTGAAGATCACAGAAGACTTGAAATCCTTCAAGGCTTATGACAAGCTTCGTATTGAGAGAACGAATGCCCGCCATGTCGGTGCTCGGTTGAAGAGGGCTGCCGAGGCAGAGAAGGAAGAGAAGAAGTAA

Protein sequence

MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKLRIERTNARHVGARLKRAAEAEKEEKK

Homology

[Close]

BLAST of Csor.00g274370 vs. ExPASy Swiss-Prot
Match: P41127 (60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 7.0e-94
Identity = 169/206 (82.04%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG Y+ I  EKP++ELVK+T ++KSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. ExPASy Swiss-Prot
Match: Q9FF90 (60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.2e-93
Identity = 171/206 (83.01%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKK APTIGI+VDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELA ATQVQG YM I   K ++ELVK+T DLK+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 207
           R+ERTNARH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. ExPASy Swiss-Prot
Match: P41128 (60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 1.9e-91
Identity = 167/206 (81.07%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELK+AGIPKK APTIGIAVDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELA ATQVQG YM I  EK + ELVK+T ++KS KA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKI 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAA+AEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. ExPASy Swiss-Prot
Match: P41129 (60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 2.5e-91
Identity = 166/206 (80.58%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGI++DHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELA ATQVQG YM I  EK ++ELVK+T ++KS  AYDK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKI 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAA+AEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. ExPASy Swiss-Prot
Match: Q9SMT4 (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 4.4e-80
Identity = 151/206 (73.30%), Postives = 171/206 (83.01%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+K W+NYV+T FNQPA KTRRR ARQ KAVK FPRPTAGP+RP+VH Q
Sbjct: 1   MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TL YNMKVRAG+GF+LEELKAAGIPKK APTIGI+VDH R+NRSLE  Q NVQRLKTYKA
Sbjct: 61  TLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           K+V+FPR AR  K GDS  +ELA ATQVQ  +M I  E P++ELVK+T D+K F AYDK+
Sbjct: 121 KLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 207
           R+E  N RH G R KRAAEAEKEEKK
Sbjct: 181 RLEGINKRHAGVRAKRAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. NCBI nr
Match: XP_022929155.1 (60S ribosomal protein L13-3-like [Cucurbita moschata] >KAG6579642.1 hypothetical protein SDJN03_24090, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017097.1 hypothetical protein SDJN02_22209 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 400 bits (1027), Expect = 2.91e-140
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 206
           RIERTNARHVGARLKRAAEAEKEEKK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. NCBI nr
Match: XP_023550831.1 (60S ribosomal protein L13-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399 bits (1025), Expect = 5.87e-140
Identity = 205/206 (99.51%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDK+
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKI 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 206
           RIERTNARHVGARLKRAAEAEKEEKK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. NCBI nr
Match: XP_022969755.1 (60S ribosomal protein L13-3-like [Cucurbita maxima])

HSP 1 Score: 398 bits (1023), Expect = 1.18e-139
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRN RQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNVRQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 206
           RIERTNARHVGARLKRAAEAEKEEKK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. NCBI nr
Match: XP_004143667.1 (60S ribosomal protein L13-3 [Cucumis sativus] >KAA0055099.1 60S ribosomal protein L13-3-like [Cucumis melo var. makuwa] >KGN50340.1 hypothetical protein Csa_000560 [Cucumis sativus])

HSP 1 Score: 387 bits (995), Expect = 2.20e-135
Identity = 199/206 (96.60%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG YM IGLEKPSVELVKITED+KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 206
           R+ER NARHVGARLK+AAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. NCBI nr
Match: XP_008467320.1 (PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo])

HSP 1 Score: 387 bits (994), Expect = 3.13e-135
Identity = 198/206 (96.12%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG YM IGLEKPSVELVK+TED+KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKVTEDMKSFKAYDKL 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 206
           R+ER NARHVGARLK+AAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. ExPASy TrEMBL
Match: A0A6J1ETG8 (60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111435822 PE=3 SV=1)

HSP 1 Score: 400 bits (1027), Expect = 1.41e-140
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 206
           RIERTNARHVGARLKRAAEAEKEEKK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. ExPASy TrEMBL
Match: A0A6J1I0U7 (60S ribosomal protein L13 OS=Cucurbita maxima OX=3661 GN=LOC111468859 PE=3 SV=1)

HSP 1 Score: 398 bits (1023), Expect = 5.73e-140
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRN RQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNVRQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 206
           RIERTNARHVGARLKRAAEAEKEEKK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. ExPASy TrEMBL
Match: A0A5A7UNR2 (60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00250 PE=3 SV=1)

HSP 1 Score: 387 bits (995), Expect = 1.07e-135
Identity = 199/206 (96.60%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG YM IGLEKPSVELVKITED+KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 206
           R+ER NARHVGARLK+AAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. ExPASy TrEMBL
Match: A0A0A0KKX2 (60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1)

HSP 1 Score: 387 bits (995), Expect = 1.07e-135
Identity = 199/206 (96.60%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG YM IGLEKPSVELVKITED+KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 206
           R+ER NARHVGARLK+AAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. ExPASy TrEMBL
Match: A0A1S3CTG8 (60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1)

HSP 1 Score: 387 bits (994), Expect = 1.51e-135
Identity = 198/206 (96.12%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG YM IGLEKPSVELVK+TED+KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKVTEDMKSFKAYDKL 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 206
           R+ER NARHVGARLK+AAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. TAIR 10
Match: AT3G49010.1 (breast basic conserved 1 )

HSP 1 Score: 344.7 bits (883), Expect = 5.0e-95
Identity = 169/206 (82.04%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG Y+ I  EKP++ELVK+T ++KSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. TAIR 10
Match: AT3G49010.2 (breast basic conserved 1 )

HSP 1 Score: 344.7 bits (883), Expect = 5.0e-95
Identity = 169/206 (82.04%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG Y+ I  EKP++ELVK+T ++KSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. TAIR 10
Match: AT3G49010.3 (breast basic conserved 1 )

HSP 1 Score: 344.7 bits (883), Expect = 5.0e-95
Identity = 169/206 (82.04%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG Y+ I  EKP++ELVK+T ++KSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. TAIR 10
Match: AT5G23900.1 (Ribosomal protein L13e family protein )

HSP 1 Score: 344.0 bits (881), Expect = 8.5e-95
Identity = 171/206 (83.01%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKK APTIGI+VDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELA ATQVQG YM I   K ++ELVK+T DLK+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 207
           R+ERTNARH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Csor.00g274370 vs. TAIR 10
Match: AT3G49010.4 (breast basic conserved 1 )

HSP 1 Score: 338.2 bits (866), Expect = 4.7e-93
Identity = 168/206 (81.55%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180
           K+V+FPRRAR  KAGDSTPEELA ATQVQG Y+ I  EKP++ELVK+T ++KSFKA+DK+
Sbjct: 121 KLVIFPRRAR--KAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RIERTNARHVGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 204

The following BLAST results are available for this feature:

BLAST of Csor.00g274370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41127	7.0e-94	82.04	60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1	[more]
Q9FF90	1.2e-93	83.01	60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1	[more]
P41128	1.9e-91	81.07	60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
P41129	2.5e-91	80.58	60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
Q9SMT4	4.4e-80	73.30	Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C P...	[more]

BLAST of Csor.00g274370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929155.1	2.91e-140	100.00	60S ribosomal protein L13-3-like [Cucurbita moschata] >KAG6579642.1 hypothetical...	[more]
XP_023550831.1	5.87e-140	99.51	60S ribosomal protein L13-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022969755.1	1.18e-139	99.51	60S ribosomal protein L13-3-like [Cucurbita maxima]	[more]
XP_004143667.1	2.20e-135	96.60	60S ribosomal protein L13-3 [Cucumis sativus] >KAA0055099.1 60S ribosomal protei...	[more]
XP_008467320.1	3.13e-135	96.12	PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo]	[more]

BLAST of Csor.00g274370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETG8	1.41e-140	100.00	60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111435822 PE=3 SV=...	[more]
A0A6J1I0U7	5.73e-140	99.51	60S ribosomal protein L13 OS=Cucurbita maxima OX=3661 GN=LOC111468859 PE=3 SV=1	[more]
A0A5A7UNR2	1.07e-135	96.60	60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0KKX2	1.07e-135	96.60	60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1	[more]
A0A1S3CTG8	1.51e-135	96.12	60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1	[more]

BLAST of Csor.00g274370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49010.1	5.0e-95	82.04	breast basic conserved 1	[more]
AT3G49010.2	5.0e-95	82.04	breast basic conserved 1	[more]
AT3G49010.3	5.0e-95	82.04	breast basic conserved 1	[more]
AT5G23900.1	8.5e-95	83.01	Ribosomal protein L13e family protein	[more]
AT3G49010.4	4.7e-93	81.55	breast basic conserved 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001380	Ribosomal protein L13e	PFAM	PF01294	Ribosomal_L13e	coord: 6..184 e-value: 5.6E-77 score: 257.7
IPR001380	Ribosomal protein L13e	PANTHER	PTHR11722	60S RIBOSOMAL PROTEIN L13	coord: 2..206
IPR001380	Ribosomal protein L13e	HAMAP	MF_00499	Ribosomal_L13e	coord: 44..127 score: 21.640017
None	No IPR available	GENE3D	1.20.5.110		coord: 166..206 e-value: 6.1E-14 score: 53.8
None	No IPR available	PANTHER	PTHR11722:SF11	60S RIBOSOMAL PROTEIN L13	coord: 2..206
IPR018256	Ribosomal protein L13e, conserved site	PROSITE	PS01104	RIBOSOMAL_L13E	coord: 69..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g274370.m01	Csor.00g274370.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome