Csor.00g274220 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g274220
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description40S ribosomal protein S20
LocationCsor_Chr15: 10731540 .. 10733234 (+)
RNA-Seq ExpressionCsor.00g274220
SyntenyCsor.00g274220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCCTACCAAGGCTGGTTTGGAGGATGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAAAAGGGTATCTCCTTCCCTCAGTTCTTGAAGCAAGTTGAATTTTTATTTTTTATGATATTATATTCGAACTCTTGTGTTGTTTGTCTCATGGTTTTGCGTTTTTGTAATGTGTTTCGGAAACATATAGATTCTTCTAAATTTGCGCTATGATTGTTGTTGTTGTTGCTGTTTGTAATTCGTCTGATTTTCATTTTTCATTTTTCATGTTTGTCTTGATCAATGGATTGTTTATTATTGAATTGTTCTTATGTTATGTCCACCGAATGAATTTCTGATGGTCGCTTTGAGAGTCTTCCATGATTCAAAGTTGGAATCGAGCCTCTTTGGGGTTTTGACTTTACTGAGCAAGGGTTTTCCTTGCCCTAATTTCTTTGTTTCTATGAATTATTGGAATTTATTGATGTCTTCAGGTTTGTAAATGTTAGCTTAATCCTCACGGTTTACTTTCTTTTTCAATCAATAGTTTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTTAAGGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTAATTTTGAATCAATGCTTAACTTAAGAATAACTATAAGCCTGTGTTTGGATTTCTCTGGCTGCTTGTTAGTCATTATTACCCTGGATCAAGCCCTGAACTGTATTTTCCATCTTTTATTTTTCTTAACCTGGGATTGGTATCATGATATTTGTAGCTTCACACCTTGTGTTTTAGTCCATTTTTAAAAGCCTCTCCCTGCGCTCGCCTAACCAATGGTCTGGCATGTCGCCTTGGAAAGACCGAGGTGCACAAAATAAGGTGGTTTTCATTATAGTGTGCCTCACAAAGGGCAGCATTTATTTTTGTGCCCTGCGCTTAAGCCCTGAAGGCCATTGCACTATTGCACCTTGAGCTTAAAAAAAACACTTGTTTTAGTGTGGTAATTCTGTTATCTCTTTATCCTTCCTCCCCATGTACAGCCACAGCCCTTAGCCTTGTTATTGTTTTCCACACTTGAACTTTGGATGCGAGTTTTAGTGATTCTGCTGCTTGAATATGTCTTTGTTCACGAAACACTGTGGAAACGTATGAACGGGAGATCTGCAAGTTCTTTGGAGTTGTGCTTTGATGGGTTTCACAAATTTTGAGTTTATTATTCTTTGTTGTAATATGAAGTAAATGTATTGTCATCATATTCCATGTAAAACCCAGTCCTCTGTACTTGGTATCATAATTGACTCTATTTAGTGTAGTTAGTCTGGCATTGTTTATAATTATTCAGTTAATATTGGTTATTTTGGTATATGTTTTCTTGGGTGACTTGATTTGTTTCTCTTAGCCCCCGTGTTCATCAGAGAAGCCAAGGGGGCCAATAAGATCCATCCTGATCATTGGTCAATAATCTTGTGCTTTTGTTGCAGGTACAAACACATGGGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATCGACCTCTTTAGCTCTGCTGATGTTGTTAAGCAGATCACATCCATCACCATCGAACCGGGTGTTGAGGTTGAAGTCACAATTGCAGATTGATGTGTTTTCCAATATTTCCTGA

mRNA sequence

ATGAAGCCTACCAAGGCTGGTTTGGAGGATGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTTAAGGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTACAAACACATGGGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATCGACCTCTTTAGCTCTGCTGATATTGATGTGTTTTCCAATATTTCCTGA

Coding sequence (CDS)

ATGAAGCCTACCAAGGCTGGTTTGGAGGATGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTTAAGGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTACAAACACATGGGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATCGACCTCTTTAGCTCTGCTGATATTGATGTGTTTTCCAATATTTCCTGA

Protein sequence

MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADIDVFSNIS
Homology
[Close]
BLAST of Csor.00g274220 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.6e-44
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 6   MKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 65

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 96
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS D+
Sbjct: 66  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDV 100

[Close]
BLAST of Csor.00g274220 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-43
Identity = 86/95 (90.53%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 8   MKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 67

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 96
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS D+
Sbjct: 68  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDV 102

[Close]
BLAST of Csor.00g274220 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 162.2 bits (409), Expect = 3.2e-39
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVLH
Sbjct: 12  MKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLH 71

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 96
           ITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSAD+
Sbjct: 72  ITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADV 106

[Close]
BLAST of Csor.00g274220 vs. ExPASy Swiss-Prot
Match: P23403 (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.4e-32
Identity = 64/93 (68.82%), Postives = 81/93 (87.10%), Query Frame = 0 

Query: 3  PTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHIT 62
          P KA + D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L IT
Sbjct: 6  PGKAPV-DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRIT 65

Query: 63 TRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 96
          TRK+PCGEG+ TWDRF++R+HKR+IDL S ++I
Sbjct: 66 TRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEI 97

[Close]
BLAST of Csor.00g274220 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-31
Identity = 60/81 (74.07%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 15 IHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT 74
          IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ T
Sbjct: 17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKT 76

Query: 75 WDRFELRVHKRVIDLFSSADI 96
          WDRF++R+HKR+IDL S ++I
Sbjct: 77 WDRFQMRIHKRLIDLHSPSEI 97

[Close]
BLAST of Csor.00g274220 vs. NCBI nr
Match: KAG6579657.1 (40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204 bits (520), Expect = 2.46e-66
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH
Sbjct: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADIDVFSNIS 102
           ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADIDVFSNIS
Sbjct: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADIDVFSNIS 102

[Close]
BLAST of Csor.00g274220 vs. NCBI nr
Match: XP_022929156.1 (40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958705.1 40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958706.1 40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022970228.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_022995277.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_022995278.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_023532340.1 40S ribosomal protein S20-2 [Cucurbita pepo subsp. pepo] >XP_023551673.1 40S ribosomal protein S20-2 [Cucurbita pepo subsp. pepo] >KAG7035584.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7037622.1 40S ribosomal protein S20-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191 bits (485), Expect = 9.85e-61
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH
Sbjct: 6   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 65

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 95
           ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD+
Sbjct: 66  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV 100

[Close]
BLAST of Csor.00g274220 vs. NCBI nr
Match: XP_022985516.1 (40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >KAG7014816.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189 bits (481), Expect = 4.14e-60
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH
Sbjct: 6   MKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 65

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 95
           ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD+
Sbjct: 66  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV 100

[Close]
BLAST of Csor.00g274220 vs. NCBI nr
Match: XP_008467267.1 (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_016903425.1 PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_038906766.1 40S ribosomal protein S20-2 [Benincasa hispida] >XP_038906767.1 40S ribosomal protein S20-2 [Benincasa hispida] >KAA0055131.1 40S ribosomal protein S20-2 [Cucumis melo var. makuwa] >TYK20728.1 40S ribosomal protein S20-2 [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (480), Expect = 5.70e-60
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH
Sbjct: 6   MKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 65

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 95
           ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD+
Sbjct: 66  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV 100

[Close]
BLAST of Csor.00g274220 vs. NCBI nr
Match: KAG6605675.1 (40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191 bits (485), Expect = 5.80e-60
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH
Sbjct: 61  MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 120

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 95
           ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD+
Sbjct: 121 ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV 155

[Close]
BLAST of Csor.00g274220 vs. ExPASy TrEMBL
Match: A0A6J1I3A7 (40S ribosomal protein S20-2 OS=Cucurbita maxima OX=3661 GN=LOC111469177 PE=3 SV=1)

HSP 1 Score: 191 bits (485), Expect = 4.77e-61
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH
Sbjct: 6   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 65

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 95
           ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD+
Sbjct: 66  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV 100

[Close]
BLAST of Csor.00g274220 vs. ExPASy TrEMBL
Match: A0A6J1H2U8 (40S ribosomal protein S20-2 OS=Cucurbita moschata OX=3662 GN=LOC111459851 PE=3 SV=1)

HSP 1 Score: 191 bits (485), Expect = 4.77e-61
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH
Sbjct: 6   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 65

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 95
           ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD+
Sbjct: 66  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV 100

[Close]
BLAST of Csor.00g274220 vs. ExPASy TrEMBL
Match: A0A6J1J8F7 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=3 SV=1)

HSP 1 Score: 189 bits (481), Expect = 2.01e-60
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH
Sbjct: 6   MKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 65

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 95
           ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD+
Sbjct: 66  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV 100

[Close]
BLAST of Csor.00g274220 vs. ExPASy TrEMBL
Match: A0A1S4E624 (40S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1)

HSP 1 Score: 189 bits (480), Expect = 2.76e-60
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH
Sbjct: 6   MKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 65

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 95
           ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD+
Sbjct: 66  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV 100

[Close]
BLAST of Csor.00g274220 vs. ExPASy TrEMBL
Match: A0A5D3DB09 (40S ribosomal protein S20-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001300 PE=3 SV=1)

HSP 1 Score: 189 bits (480), Expect = 2.76e-60
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH
Sbjct: 6   MKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 65

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 95
           ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD+
Sbjct: 66  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV 100

[Close]
BLAST of Csor.00g274220 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 177.2 bits (448), Expect = 6.8e-45
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 6   MKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 65

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 96
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS D+
Sbjct: 66  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDV 100

[Close]
BLAST of Csor.00g274220 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 177.2 bits (448), Expect = 6.8e-45
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 6   MKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 65

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 96
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS D+
Sbjct: 66  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDV 100

[Close]
BLAST of Csor.00g274220 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 177.2 bits (448), Expect = 6.8e-45
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 6   MKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 65

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 96
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS D+
Sbjct: 66  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDV 100

[Close]
BLAST of Csor.00g274220 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-44
Identity = 86/95 (90.53%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 8   MKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 67

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 96
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS D+
Sbjct: 68  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDV 102

[Close]
BLAST of Csor.00g274220 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-44
Identity = 86/95 (90.53%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 1   MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 60
           MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 8   MKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 67

Query: 61  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADI 96
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS D+
Sbjct: 68  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDV 102

The following BLAST results are available for this feature:
BLAST of Csor.00g274220 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STY69.6e-4491.5840S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1[more]
P492002.1e-4390.5340S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2[more]
P356863.2e-3982.1140S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2... [more]
P234038.4e-3268.8240S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1[more]
Q3ZBH83.2e-3174.0740S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1[more]
BLAST of Csor.00g274220 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579657.12.46e-66100.0040S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022929156.19.85e-6198.9540S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958705.1 40S ribosomal p... [more]
XP_022985516.14.14e-6097.8940S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosoma... [more]
XP_008467267.15.70e-6097.89PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_016903425.1 PREDICTED:... [more]
KAG6605675.15.80e-6098.9540S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Csor.00g274220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I3A74.77e-6198.9540S ribosomal protein S20-2 OS=Cucurbita maxima OX=3661 GN=LOC111469177 PE=3 SV=... [more]
A0A6J1H2U84.77e-6198.9540S ribosomal protein S20-2 OS=Cucurbita moschata OX=3662 GN=LOC111459851 PE=3 S... [more]
A0A6J1J8F72.01e-6097.8940S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=... [more]
A0A1S4E6242.76e-6097.8940S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1[more]
A0A5D3DB092.76e-6097.8940S ribosomal protein S20-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of Csor.00g274220 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G47370.26.8e-4591.58Ribosomal protein S10p/S20e family protein [more]
AT3G47370.16.8e-4591.58Ribosomal protein S10p/S20e family protein [more]
AT3G47370.36.8e-4591.58Ribosomal protein S10p/S20e family protein [more]
AT3G45030.11.5e-4490.53Ribosomal protein S10p/S20e family protein [more]
AT5G62300.11.5e-4490.53Ribosomal protein S10p/S20e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 17..30
score: 44.51
coord: 74..88
score: 52.69
coord: 52..67
score: 42.43
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 1..95
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 15..101
score: 12.770254
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 19..102
e-value: 2.7E-25
score: 100.0
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 19..100
e-value: 1.6E-24
score: 86.0
IPR036838Ribosomal protein S10 domain superfamilyGENE3D3.30.70.600Ribosomal protein S10 domaincoord: 3..102
e-value: 4.6E-39
score: 135.0
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILY54999Ribosomal protein S10coord: 17..92
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMTIGR01046TIGR01046coord: 16..92
e-value: 1.9E-33
score: 112.8
NoneNo IPR availablePANTHERPTHR11700:SF27RIBOSOMAL PROTEIN S10-RELATEDcoord: 1..95
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 41..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g274220.m01Csor.00g274220.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome