Csor.00g274080 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g274080
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr06: 8408236 .. 8410557 (-)
RNA-Seq ExpressionCsor.00g274080
SyntenyCsor.00g274080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTACAGTGCAAAACGCTTGTGTCGACGTATTCTATTATAGAGCAAATTGTTTGGCTCAGCAGGACAGCATCTATAAGGTATCACTCAAATCTGCCAGCTAAATGTCCTGCTCATTCGTATCAATTTATGGCGATTATCAGATGACACGATTTCGATAGAACAAAGAACGTGCCGAGCTGATCGGAGGATCTCCTGTTCTGTTGGATGGTTCATCAAATATTTTCCACATTGGTTGAGGTCAGTGTTTTCACAATCTTACGTGAATTGAATTATCGCTTTCACTGGATGCAAATGATATCCTTGAGCTGTCCTTGATGTATTAGCAGGGAGAGCCTTGGAGGCTTTCCTCAGCTAGGAAAAAGCTGGAGAAGGATATTAAGAACAAGAAAACAAGCTGACGTAGTGAACTCATCCCTCTCAACAATGAAAACTAAAGCCTTCTACTGTTTCCCTCTTGGACACCCTCTTTCTTTACTGTTTTTTTGGGTGTATTGGAATTGATCTAGATGAGAAATACCAACGTGAAGGTTTCGGCAAACCTCGAACGAAAGAGATCCTTTGTCTTATTAAACAGCCAGGATATCGTGTTGCAACGGGTGCCGCCGTAGTTCCTCAGAAAGTAACACATCGTGTCACGGGAGCATTTGATGGTCACCTCTCGTATCATGGGATAAGGTTACTCAATGATCTTTCATCAGGATCCCTTTTCAGAATGATATCATAATAAATGCATCCATAGGGCAAAAATATGGAAGAATCTCTGGAACATGATGCTCATAAATGTCACTAAAGAGCTTTCTTAAAAAAATACAGAAAAGAATTTAACGAAGGTTATCGATATAGACTAAAAGGGATTTGTTTGTAAAAGCTCAAAGATCGAGGTTATGAATGAAATATTCGAAAGTTTATGGAGTAAAATGGAAGGAAGAATACGTTTAGTTATTAGAGTTGTGGTGTCTGGGATGCAGTTGCTGCCATCAGCACCAAAGCCCCAAGTCGCTCTGGACAGACCGCCCTCCTTGCTATCAAGAGTATGAATGCTATATCATATTAAAGATACTTCTGAATTTATAAAAAAAAAAAATATACATCTTTCCTGGGTAACCCTTACTGCATCACTGAATCAGGGTGAAATCAAAATTTTATATTATTCATCATGTATTCGGGAAATTGCTCTGTGATTATTATATAGTACCTCTTGAAGGGATCGCTATTCTTCCTGAGGTTAAATTATAATGGGTTATAGCAACGATTGGAGTGAATTTTAGGACTATTTAATTGGAGTTGTTATAACAGGCCTCAAGCAGGCTTCCGGGTAGGTAGTTCCTTTTTGGACTTTACCAAAGGGATCAGAGTCAGGTTATCGGTTGGTGTGAGGCTAGCCTCTCCATAGTAGACGGTTTTAACCTTGTGAGGCCGACGAAACAATACATAGCACGCCAAAAGTGGACAAATCTGTTAGAGGTGGCTTGAGCTGTAAAAAAATTAACTTACTCTCCTTAACTAAAAACTGAAGGAAGACCGAAATGGATTAGCCAAAGAGAAACAATATTTTCAGGGTGGAAACCTCTCAATAATACGTTGTGCAGAAACCTTGAGGAAGTCCGGGATACCAAAAGGAGAACAATATTACTAGCGGTAGCTAAACAGTTGTGGACGGTGTGACAACCTATGCAATAAAATTTACTAGTTTTATCCCCAACCGCTTTCAGATACTTATCATAACCGCTTCATTGCATGTCGGGTTATATAAGCAATTTTGTGCGGGAAATTAAGTTGTTTTTTTTTTAGCAAAGCTTTTATTAGACACAAAATGAAACCTATTTGACACAAAATGAACGGTCTAGTTCATTCACTAAATAAAACCATTCCTTGCACACAGACTACCAATGCATTCAGAATCAGAGAGAGAAATGGATAAAATCTGTTTGCACTATAGTGGGATTTACTATCAACCATTTTTTTAACTACATACAACATGATGGCAATAAAAAAGCTGTCTTTTCACATTCCTCTACACGAGCCACAATCTTTCCCGATTATTTCATCACAATAAAAAAGTGCTCTGTTCTTTTCACATTCATCTCATTCTTCTTTGTTCTGTTAGGCAACAAAATCTTAATCATGATTCATCTCTCTCACACCACGATAATACTCACCTTGGACTACATTTCCCCGAAGCAGTCACCATCTATCGCAATTCAAACGACACGTCTCCCAAGATACGTGGGAAGGATCGTGCGGGGCATTGCTCGAGCATAATCAATTGGTACAAGTTGTCTTTGCCTGATCAATTACATTTCAAAAGAAACTCCTGA

mRNA sequence

ATGGTTACAGTGCAAAACGCTTGTGTCGACGTATTCTATTATAGAGCAAATTGTTTGGCTCAGCAGGACAGCATCTATAAGAACAAAGAACGTGCCGAGCTGATCGGAGGATCTCCTGTTCTGTTGGATGGTTCATCAAATATTTTCCACATTGATGAGAAATACCAACGTGAAGGTTTCGGCAAACCTCGAACGAAAGAGATCCTTTGTCTTATTAAACAGCCAGGATATCGTGTTGCAACGGGTGCCGCCGTAGTTCCTCAGAAAGTAACACATCGTGTCACGGGAGCATTTGATGGTCACCTCTCGTATCATGGGATAAGTTGCTGCCATCAGCACCAAAGCCCCAAGTCGCTCTGGACAGACCGCCCTCCTTGCTATCAAGAGCAACAAAATCTTAATCATGATTCATCTCTCTCACACCACGATAATACTCACCTTGGACTACATTTCCCCGAAGCAGTCACCATCTATCGCAATTCAAACGACACGTCTCCCAAGATACGTGGGAAGGATCGTGCGGGGCATTGCTCGAGCATAATCAATTGGTACAAGTTGTCTTTGCCTGATCAATTACATTTCAAAAGAAACTCCTGA

Coding sequence (CDS)

ATGGTTACAGTGCAAAACGCTTGTGTCGACGTATTCTATTATAGAGCAAATTGTTTGGCTCAGCAGGACAGCATCTATAAGAACAAAGAACGTGCCGAGCTGATCGGAGGATCTCCTGTTCTGTTGGATGGTTCATCAAATATTTTCCACATTGATGAGAAATACCAACGTGAAGGTTTCGGCAAACCTCGAACGAAAGAGATCCTTTGTCTTATTAAACAGCCAGGATATCGTGTTGCAACGGGTGCCGCCGTAGTTCCTCAGAAAGTAACACATCGTGTCACGGGAGCATTTGATGGTCACCTCTCGTATCATGGGATAAGTTGCTGCCATCAGCACCAAAGCCCCAAGTCGCTCTGGACAGACCGCCCTCCTTGCTATCAAGAGCAACAAAATCTTAATCATGATTCATCTCTCTCACACCACGATAATACTCACCTTGGACTACATTTCCCCGAAGCAGTCACCATCTATCGCAATTCAAACGACACGTCTCCCAAGATACGTGGGAAGGATCGTGCGGGGCATTGCTCGAGCATAATCAATTGGTACAAGTTGTCTTTGCCTGATCAATTACATTTCAAAAGAAACTCCTGA

Protein sequence

MVTVQNACVDVFYYRANCLAQQDSIYKNKERAELIGGSPVLLDGSSNIFHIDEKYQREGFGKPRTKEILCLIKQPGYRVATGAAVVPQKVTHRVTGAFDGHLSYHGISCCHQHQSPKSLWTDRPPCYQEQQNLNHDSSLSHHDNTHLGLHFPEAVTIYRNSNDTSPKIRGKDRAGHCSSIINWYKLSLPDQLHFKRNS
Homology
[Close]
BLAST of Csor.00g274080 vs. NCBI nr
Match: KAG6597166.1 (hypothetical protein SDJN03_10346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 421 bits (1082), Expect = 6.44e-149
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 1   MVTVQNACVDVFYYRANCLAQQDSIYKNKERAELIGGSPVLLDGSSNIFHIDEKYQREGF 60
           MVTVQNACVDVFYYRANCLAQQDSIYKNKERAELIGGSPVLLDGSSNIFHIDEKYQREGF
Sbjct: 1   MVTVQNACVDVFYYRANCLAQQDSIYKNKERAELIGGSPVLLDGSSNIFHIDEKYQREGF 60

Query: 61  GKPRTKEILCLIKQPGYRVATGAAVVPQKVTHRVTGAFDGHLSYHGISCCHQHQSPKSLW 120
           GKPRTKEILCLIKQPGYRVATGAAVVPQKVTHRVTGAFDGHLSYHGISCCHQHQSPKSLW
Sbjct: 61  GKPRTKEILCLIKQPGYRVATGAAVVPQKVTHRVTGAFDGHLSYHGISCCHQHQSPKSLW 120

Query: 121 TDRPPCYQEQQNLNHDSSLSHHDNTHLGLHFPEAVTIYRNSNDTSPKIRGKDRAGHCSSI 180
           TDRPPCYQEQQNLNHDSSLSHHDNTHLGLHFPEAVTIYRNSNDTSPKIRGKDRAGHCSSI
Sbjct: 121 TDRPPCYQEQQNLNHDSSLSHHDNTHLGLHFPEAVTIYRNSNDTSPKIRGKDRAGHCSSI 180

Query: 181 INWYKLSLPDQLHFKRNS 198
           INWYKLSLPDQLHFKRNS
Sbjct: 181 INWYKLSLPDQLHFKRNS 198

The following BLAST results are available for this feature:
BLAST of Csor.00g274080 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g274080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6597166.16.44e-149100.00hypothetical protein SDJN03_10346, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g274080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g274080 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g274080.m01Csor.00g274080.m01mRNA