Csor.00g273920 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g273920
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	LIM domain-containing protein PLIM2b-like
Location	Csor_Chr06: 8306853 .. 8308619 (+)
RNA-Seq Expression	Csor.00g273920
Synteny	Csor.00g273920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCACTGGAACATTGGATAAATGCAAGGCTTGTAATAAGACTGTTTATGTGGTTGATTTGTTGTCTCTTGAAGGCAATCCTTACCATAAGAATTGCTTCAGATGCAGCCACTGCAAAGGCACCCTTTCGGTTAGTCTCGGTTTACATTTTCAAATTTCAACATCACCTTCTCGTGTTAGATCGTTCGATAATGGCGGATTTTACCCGAATTGTTTGATTATGATGACAGATGACCAGCCACTCGTGGATGGACGGCGTCCTGTATTGCAAGCCTCATTTCGATCAACTCTTTAAGGAATCTGGAAATTTCGCCAACTTTCAATGTAGTATAACCTTTATTTCCCTCTTTTTGTCTGTTCCTTTTTTCTTTTCATATGTTCCTGACATTCTCGTTTCATTGTTCAACAGCCAAGTCTGAGAAGAAACCTGAACTGGTATGCTCCCATTGTGTTCTTCTTTCCTTAGATTTAAAAGAAGTGACTGTCATAATCTCACTAACTCGTGGATTAGATACTAGATTGAATGTATGAGAATAAAATGGATCAAAGTTTGATAGTTGCTAGGATCATGCAAGTTTTTGAATCTACATCCAACCGTTATTTGGGTTGTAGTGTCTCGTTTTCAACCATTCTTATTGGCATTCAAAACTTCAAATTCATATCGAATGTTTGGTAGGAGCCAATTTAGATTTTAAAGTTCTCTAACGATTATTACGAGACTCCTACCTTACGATCATGTCATTCAATAGTATATATGAGAAAGAAACGGTTAAAATCGCAATTTTTCAAATTCATTTCTAGGAGACCACTCATTCAATAATTTTTTGTTCAATGCCTGGTTTTGAATATGCCATTCCCAATAGGCTTAGCTTGCTGACCTTAAATAGAATGGGCCTAGGCATTCTGGTTTTGTTTCTAATTTTCTAGTTTTCGGTCAAGAGCAAGTTTGATTGGACGTTTCTAACGTTCTATAGTCAACTTAAGCTATCACTCAAGCAGCCAAGAGAAAGTTTGATTGAAATCAGGAAAAAATTCATCTTGGTATCACGGAATCCTTTTGTGTCATTTACCCCGAAAAAACAGCCTATTCTATTCGAAAGTGTCCCACATCTATTAATTTAGGGAATGGTCATGGGTTTATAATCAAAGTGTCCCACTCTCCATTGGTTTGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGTTTATACTCAAAATGAACAATATCATACCATCGTGTCTTTTGAAACTTCAACCCTGATTTTCATGCAAATGCTGTAATATTCATGTTATATTACAACTTTCACAATCTTTGACAGACAAGGACCAACAGCAAACTCTCCGCCATGTTCTGTGGGACTCAAGATAGATGTGCTGCTTGCAGTAAAGTAGTTTATCCATTAGAAAAGGTCCGTAGTTCTTCCCCTTTTCTTCTTTACAACACACATTTTTCTCAAAATTGTGAAAGAAAAACTCTGCTGGGCTTAACAGATCAGTCTTGAGGGGGAATGCTACCACAAGAACTGCTTCAGATGTGCTCATGGTGGATGCAATTTGACACACTCTTCTTATGCTGCTCTTGATGGAGTGTTGTACTGCAAGCACCATTTTGCTCAGCTCTTCATGGTCAAGGGTAACTATACCCATGTCCTTCAAGCTGCTGCAAACAAGAAAGCCACCATGACCCCGGCCGAACGTGCCGAAAAAGATGGCAAGCCTCAGCCTGATTCCGAGGACGGCGCAGTAGAGCAGTCTTAA

mRNA sequence

ATGGCTTTCACTGGAACATTGGATAAATGCAAGGCTTGTAATAAGACTGTTTATGTGGTTGATTTGTTGTCTCTTGAAGGCAATCCTTACCATAAGAATTGCTTCAGATGCAGCCACTGCAAAGGCACCCTTTCGATGACCAGCCACTCGTGGATGGACGGCGTCCTGTATTGCAAGCCTCATTTCGATCAACTCTTTAAGGAATCTGGAAATTTCGCCAACTTTCAATCCAAGTCTGAGAAGAAACCTGAACTGACAAGGACCAACAGCAAACTCTCCGCCATGTTCTGTGGGACTCAAGATAGATGTGCTGCTTGCAGTAAAGTAGTTTATCCATTAGAAAAGATCAGTCTTGAGGGGGAATGCTACCACAAGAACTGCTTCAGATGTGCTCATGGTGGATGCAATTTGACACACTCTTCTTATGCTGCTCTTGATGGAGTGTTGTACTGCAAGCACCATTTTGCTCAGCTCTTCATGGTCAAGGGTAACTATACCCATGTCCTTCAAGCTGCTGCAAACAAGAAAGCCACCATGACCCCGGCCGAACGTGCCGAAAAAGATGGCAAGCCTCAGCCTGATTCCGAGGACGGCGCAGTAGAGCAGTCTTAA

Coding sequence (CDS)

ATGGCTTTCACTGGAACATTGGATAAATGCAAGGCTTGTAATAAGACTGTTTATGTGGTTGATTTGTTGTCTCTTGAAGGCAATCCTTACCATAAGAATTGCTTCAGATGCAGCCACTGCAAAGGCACCCTTTCGATGACCAGCCACTCGTGGATGGACGGCGTCCTGTATTGCAAGCCTCATTTCGATCAACTCTTTAAGGAATCTGGAAATTTCGCCAACTTTCAATCCAAGTCTGAGAAGAAACCTGAACTGACAAGGACCAACAGCAAACTCTCCGCCATGTTCTGTGGGACTCAAGATAGATGTGCTGCTTGCAGTAAAGTAGTTTATCCATTAGAAAAGATCAGTCTTGAGGGGGAATGCTACCACAAGAACTGCTTCAGATGTGCTCATGGTGGATGCAATTTGACACACTCTTCTTATGCTGCTCTTGATGGAGTGTTGTACTGCAAGCACCATTTTGCTCAGCTCTTCATGGTCAAGGGTAACTATACCCATGTCCTTCAAGCTGCTGCAAACAAGAAAGCCACCATGACCCCGGCCGAACGTGCCGAAAAAGATGGCAAGCCTCAGCCTGATTCCGAGGACGGCGCAGTAGAGCAGTCTTAA

Protein sequence

MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKPHFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGAVEQS

Homology

[Close]

BLAST of Csor.00g273920 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.3e-80
Identity = 139/202 (68.81%), Postives = 164/202 (81.19%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGTLDKC  C+KTVYVVD+LS+EG PYHK+CFRC+HCKGTL M+++S MDGVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFDQLFKESGNFA-NFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLE 120
           HF+QLFKESGNF+ NFQ    +KPELTRT SK+S++FCGTQD+CAAC K VYPLEKI +E
Sbjct: 61  HFEQLFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQME 120

Query: 121 GECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATM 180
           GEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVLQAA +++   
Sbjct: 121 GECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRT-- 180

Query: 181 TPAERAEKDGKPQPDSEDGAVE 202
                A  +  P   +ED AVE
Sbjct: 181 -----ASGNTLPPEPTEDVAVE 195

[Close]

BLAST of Csor.00g273920 vs. ExPASy Swiss-Prot
Match: Q500W4 (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 3.6e-74
Identity = 134/208 (64.42%), Postives = 164/208 (78.85%), Query Frame = 0


Query: 2   AFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKPH 61
           AFTGT DKCKAC+KTVYV+DL++LEG PYHK+CFRCSHC GTL + ++S MDGVLYCK H
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FDQLFKESGNFA-NFQS--KSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISL 121
           F+QLFKESGNF+ NFQ+  K+EK  + T+  ++LS+ F GTQD+CAAC K VYPLEK+++
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122

Query: 122 EGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKAT 181
           EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNY HVLQAAAN + +
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHRRS 182

Query: 182 MTPAERAE-KDGKPQPDSE---DGAVEQ 203
               ++ E K+ +  P  E   D A E+
Sbjct: 183 TAEEDKTEPKEDEANPTEEETSDAAAEE 210

[Close]

BLAST of Csor.00g273920 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 6.1e-74
Identity = 132/200 (66.00%), Postives = 159/200 (79.50%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGTLDKCKAC+KTVYV+DLL+LEGN YHK+CFRC+HCKGTL ++++S MDGVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFDQLFKESGNFA-NFQSKSEKKP--ELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKIS 120
           HF+QLFKESGN++ NFQ+   +KP   LTRT SKLS+ F GTQD+CA C K VYPLEK++
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKA 180
           +EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+Y HV QAAAN + 
Sbjct: 121 MEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHR- 180

Query: 181 TMTPAERAEKDGKPQPDSED 198
                 R+   G   P S+D
Sbjct: 181 ------RSASSGGASPPSDD 193

[Close]

BLAST of Csor.00g273920 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.6e-66
Identity = 109/184 (59.24%), Postives = 150/184 (81.52%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGT  KC+AC KTVY V+LLS +G  YHK CF+CSHCK  L ++++S M+GV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKESGNFA-NFQSKS-----EKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLE 120
           HF+QLFKESG+F+ NFQS +     +  PEL RT S+L+ MF GTQD+CA C+K VYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAAN 179
           K+++E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+Y H++++A+ 
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

[Close]

BLAST of Csor.00g273920 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.0e-65
Identity = 111/182 (60.99%), Postives = 149/182 (81.87%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGT  KCKAC KTVY V+LLS +G  YHK+CF+C+HCK  L ++S+S M+GVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKESGNF-ANFQS--KSEKK--PELTRTNSKLSAMFCGTQDRCAACSKVVYPLEK 120
           HF+QLFKESG+F  NFQS  KS  K  PELTRT S+++  F GTQ++CA CSK VYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 ISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANK 178
           +++E + YHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+Y H++++A+ K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

[Close]

BLAST of Csor.00g273920 vs. NCBI nr
Match: XP_022942240.1 (LIM domain-containing protein PLIM2b-like isoform X2 [Cucurbita moschata] >KAG6597150.1 LIM domain-containing protein PLIM2b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028619.1 LIM domain-containing protein PLIM2b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 431 bits (1107), Expect = 1.46e-152
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG 120
           HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG
Sbjct: 61  HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG 120

Query: 121 ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT 180
           ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT
Sbjct: 121 ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT 180

Query: 181 PAERAEKDGKPQPDSEDGAVEQS 203
           PAERAEKDGKPQPDSEDGAVEQS
Sbjct: 181 PAERAEKDGKPQPDSEDGAVEQS 203

[Close]

BLAST of Csor.00g273920 vs. NCBI nr
Match: XP_022975099.1 (LIM domain-containing protein PLIM2b-like [Cucurbita maxima] >XP_022975247.1 LIM domain-containing protein PLIM2b-like [Cucurbita maxima] >XP_022975535.1 LIM domain-containing protein PLIM2b-like [Cucurbita maxima])

HSP 1 Score: 427 bits (1099), Expect = 2.42e-151
Identity = 201/203 (99.01%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG 120
           HFDQLFKESGNFANFQSKS+KKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG
Sbjct: 61  HFDQLFKESGNFANFQSKSDKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG 120

Query: 121 ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT 180
           ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT
Sbjct: 121 ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT 180

Query: 181 PAERAEKDGKPQPDSEDGAVEQS 203
           PAE AEKDGKPQPDSEDGAVEQS
Sbjct: 181 PAEHAEKDGKPQPDSEDGAVEQS 203

[Close]

BLAST of Csor.00g273920 vs. NCBI nr
Match: XP_022942231.1 (LIM domain-containing protein PLIM2b-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 414 bits (1065), Expect = 1.01e-145
Identity = 202/231 (87.45%), Postives = 203/231 (87.88%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFDQLFKESGNFANFQ----------------------------SKSEKKPELTRTNSKL 120
           HFDQLFKESGNFANFQ                            +KSEKKPELTRTNSKL
Sbjct: 61  HFDQLFKESGNFANFQCSITVISLFLSVPFSFHMFLTFSFHCSTAKSEKKPELTRTNSKL 120

Query: 121 SAMFCGTQDRCAACSKVVYPLEKISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCK 180
           SAMFCGTQDRCAACSKVVYPLEKISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCK
Sbjct: 121 SAMFCGTQDRCAACSKVVYPLEKISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCK 180

Query: 181 HHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGAVEQS 203
           HHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGAVEQS
Sbjct: 181 HHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGAVEQS 231

[Close]

BLAST of Csor.00g273920 vs. NCBI nr
Match: XP_023540246.1 (LIM domain-containing protein PLIM2b-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 413 bits (1061), Expect = 1.31e-145
Identity = 193/196 (98.47%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG 120
           HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG
Sbjct: 61  HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG 120

Query: 121 ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT 180
           ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKAT T
Sbjct: 121 ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATTT 180

Query: 181 PAERAEKDGKPQPDSE 196
           PAE AEKDGKPQPDS+
Sbjct: 181 PAEHAEKDGKPQPDSD 196

[Close]

BLAST of Csor.00g273920 vs. NCBI nr
Match: XP_023540245.1 (LIM domain-containing protein PLIM2b-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397 bits (1019), Expect = 9.05e-139
Identity = 192/224 (85.71%), Postives = 194/224 (86.61%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFDQLFKESGNFANFQ----------------------------SKSEKKPELTRTNSKL 120
           HFDQLFKESGNFANFQ                            +KSEKKPELTRTNSKL
Sbjct: 61  HFDQLFKESGNFANFQCSITVISLFLSVPFFFSYVPDILVHCSTAKSEKKPELTRTNSKL 120

Query: 121 SAMFCGTQDRCAACSKVVYPLEKISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCK 180
           SAMFCGTQDRCAACSKVVYPLEKISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCK
Sbjct: 121 SAMFCGTQDRCAACSKVVYPLEKISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCK 180

Query: 181 HHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSE 196
           HHFAQLFMVKGNYTHVLQAAANKKAT TPAE AEKDGKPQPDS+
Sbjct: 181 HHFAQLFMVKGNYTHVLQAAANKKATTTPAEHAEKDGKPQPDSD 224

[Close]

BLAST of Csor.00g273920 vs. ExPASy TrEMBL
Match: A0A6J1FVW8 (LIM domain-containing protein PLIM2b-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447345 PE=4 SV=1)

HSP 1 Score: 431 bits (1107), Expect = 7.06e-153
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG 120
           HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG
Sbjct: 61  HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG 120

Query: 121 ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT 180
           ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT
Sbjct: 121 ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT 180

Query: 181 PAERAEKDGKPQPDSEDGAVEQS 203
           PAERAEKDGKPQPDSEDGAVEQS
Sbjct: 181 PAERAEKDGKPQPDSEDGAVEQS 203

[Close]

BLAST of Csor.00g273920 vs. ExPASy TrEMBL
Match: A0A6J1ICJ4 (LIM domain-containing protein PLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC111474367 PE=4 SV=1)

HSP 1 Score: 427 bits (1099), Expect = 1.17e-151
Identity = 201/203 (99.01%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG 120
           HFDQLFKESGNFANFQSKS+KKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG
Sbjct: 61  HFDQLFKESGNFANFQSKSDKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEG 120

Query: 121 ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT 180
           ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT
Sbjct: 121 ECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMT 180

Query: 181 PAERAEKDGKPQPDSEDGAVEQS 203
           PAE AEKDGKPQPDSEDGAVEQS
Sbjct: 181 PAEHAEKDGKPQPDSEDGAVEQS 203

[Close]

BLAST of Csor.00g273920 vs. ExPASy TrEMBL
Match: A0A6J1FNB1 (LIM domain-containing protein PLIM2b-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447345 PE=4 SV=1)

HSP 1 Score: 414 bits (1065), Expect = 4.91e-146
Identity = 202/231 (87.45%), Postives = 203/231 (87.88%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFDQLFKESGNFANFQ----------------------------SKSEKKPELTRTNSKL 120
           HFDQLFKESGNFANFQ                            +KSEKKPELTRTNSKL
Sbjct: 61  HFDQLFKESGNFANFQCSITVISLFLSVPFSFHMFLTFSFHCSTAKSEKKPELTRTNSKL 120

Query: 121 SAMFCGTQDRCAACSKVVYPLEKISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCK 180
           SAMFCGTQDRCAACSKVVYPLEKISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCK
Sbjct: 121 SAMFCGTQDRCAACSKVVYPLEKISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCK 180

Query: 181 HHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGAVEQS 203
           HHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGAVEQS
Sbjct: 181 HHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGAVEQS 231

[Close]

BLAST of Csor.00g273920 vs. ExPASy TrEMBL
Match: A0A6J1IW81 (LIM domain-containing protein PLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC111479790 PE=4 SV=1)

HSP 1 Score: 351 bits (901), Expect = 1.94e-121
Identity = 166/205 (80.98%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKAC+KTVYVVDLLSLEG PYHK+CF+CSHCKGTLSM+S+SWMDGVLYCK 
Sbjct: 1   MAFTGTLDKCKACDKTVYVVDLLSLEGIPYHKHCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFDQLFKESGNFA-NFQSK-SEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISL 120
           HF+QLFKESGNF+ NFQ+K SEK+ ELTRT SKLS MF GTQD+C+ C+K VYPLEK++L
Sbjct: 61  HFEQLFKESGNFSKNFQTKPSEKQSELTRTPSKLSTMFSGTQDKCSVCTKTVYPLEKVTL 120

Query: 121 EGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKAT 180
           EGECYHKNCFRCAHGGC+LTH SYAALDGVLYCKHHF+QLFMVKGNY HVL+AAANKK T
Sbjct: 121 EGECYHKNCFRCAHGGCHLTHGSYAALDGVLYCKHHFSQLFMVKGNYNHVLEAAANKKNT 180

Query: 181 MTPAERAEKDGKPQPDSEDGAVEQS 203
             PA+RAE+D + QP SED AVEQS
Sbjct: 181 TPPADRAEEDAESQPQSEDHAVEQS 205

[Close]

BLAST of Csor.00g273920 vs. ExPASy TrEMBL
Match: A0A6J1E9W7 (LIM domain-containing protein PLIM2c-like OS=Cucurbita moschata OX=3662 GN=LOC111432043 PE=4 SV=1)

HSP 1 Score: 350 bits (897), Expect = 7.89e-121
Identity = 165/205 (80.49%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKAC+KTVYVVDLLSLEG PYHK+CF+CSHCKGTLSM+S+SWMDGVLYCK 
Sbjct: 1   MAFTGTLDKCKACDKTVYVVDLLSLEGIPYHKHCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFDQLFKESGNFA-NFQSK-SEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISL 120
           HF+QLFKESGNF+ NFQ+K SEK+ ELTRT SKLS+MF GTQD+C+ C+K VYPLEK++L
Sbjct: 61  HFEQLFKESGNFSKNFQTKPSEKQSELTRTPSKLSSMFSGTQDKCSVCTKTVYPLEKVTL 120

Query: 121 EGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKAT 180
           EGECYHKNCFRCAHGGC+LTH SYAALDGVLYCKHHF+QLFMVKGNY HVL+AAANKK  
Sbjct: 121 EGECYHKNCFRCAHGGCHLTHGSYAALDGVLYCKHHFSQLFMVKGNYNHVLEAAANKKNA 180

Query: 181 MTPAERAEKDGKPQPDSEDGAVEQS 203
             PA+RAE+D + QP SED AVEQS
Sbjct: 181 TPPADRAEEDAESQPQSEDHAVEQS 205

[Close]

BLAST of Csor.00g273920 vs. TAIR 10
Match: AT1G01780.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 299.3 bits (765), Expect = 2.4e-81
Identity = 139/202 (68.81%), Postives = 164/202 (81.19%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGTLDKC  C+KTVYVVD+LS+EG PYHK+CFRC+HCKGTL M+++S MDGVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFDQLFKESGNFA-NFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLE 120
           HF+QLFKESGNF+ NFQ    +KPELTRT SK+S++FCGTQD+CAAC K VYPLEKI +E
Sbjct: 61  HFEQLFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQME 120

Query: 121 GECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATM 180
           GEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVLQAA +++   
Sbjct: 121 GECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRT-- 180

Query: 181 TPAERAEKDGKPQPDSEDGAVE 202
                A  +  P   +ED AVE
Sbjct: 181 -----ASGNTLPPEPTEDVAVE 195

[Close]

BLAST of Csor.00g273920 vs. TAIR 10
Match: AT3G61230.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 279.3 bits (713), Expect = 2.5e-75
Identity = 134/208 (64.42%), Postives = 164/208 (78.85%), Query Frame = 0


Query: 2   AFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKPH 61
           AFTGT DKCKAC+KTVYV+DL++LEG PYHK+CFRCSHC GTL + ++S MDGVLYCK H
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FDQLFKESGNFA-NFQS--KSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISL 121
           F+QLFKESGNF+ NFQ+  K+EK  + T+  ++LS+ F GTQD+CAAC K VYPLEK+++
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122

Query: 122 EGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKAT 181
           EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNY HVLQAAAN + +
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHRRS 182

Query: 182 MTPAERAE-KDGKPQPDSE---DGAVEQ 203
               ++ E K+ +  P  E   D A E+
Sbjct: 183 TAEEDKTEPKEDEANPTEEETSDAAAEE 210

[Close]

BLAST of Csor.00g273920 vs. TAIR 10
Match: AT2G45800.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 278.5 bits (711), Expect = 4.3e-75
Identity = 132/200 (66.00%), Postives = 159/200 (79.50%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGTLDKCKAC+KTVYV+DLL+LEGN YHK+CFRC+HCKGTL ++++S MDGVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFDQLFKESGNFA-NFQSKSEKKP--ELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKIS 120
           HF+QLFKESGN++ NFQ+   +KP   LTRT SKLS+ F GTQD+CA C K VYPLEK++
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKA 180
           +EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+Y HV QAAAN + 
Sbjct: 121 MEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHR- 180

Query: 181 TMTPAERAEKDGKPQPDSED 198
                 R+   G   P S+D
Sbjct: 181 ------RSASSGGASPPSDD 193

[Close]

BLAST of Csor.00g273920 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 252.7 bits (644), Expect = 2.5e-67
Identity = 109/184 (59.24%), Postives = 150/184 (81.52%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGT  KC+AC KTVY V+LLS +G  YHK CF+CSHCK  L ++++S M+GV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKESGNFA-NFQSKS-----EKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLE 120
           HF+QLFKESG+F+ NFQS +     +  PEL RT S+L+ MF GTQD+CA C+K VYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAAN 179
           K+++E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+Y H++++A+ 
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

[Close]

BLAST of Csor.00g273920 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 249.2 bits (635), Expect = 2.8e-66
Identity = 111/182 (60.99%), Postives = 149/182 (81.87%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGT  KCKAC KTVY V+LLS +G  YHK+CF+C+HCK  L ++S+S M+GVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKESGNF-ANFQS--KSEKK--PELTRTNSKLSAMFCGTQDRCAACSKVVYPLEK 120
           HF+QLFKESG+F  NFQS  KS  K  PELTRT S+++  F GTQ++CA CSK VYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 ISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANK 178
           +++E + YHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+Y H++++A+ K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

The following BLAST results are available for this feature:

BLAST of Csor.00g273920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1ECF5	3.3e-80	68.81	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
Q500W4	3.6e-74	64.42	LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C P...	[more]
O80839	6.1e-74	66.00	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
O04193	3.6e-66	59.24	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	4.0e-65	60.99	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]

BLAST of Csor.00g273920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942240.1	1.46e-152	100.00	LIM domain-containing protein PLIM2b-like isoform X2 [Cucurbita moschata] >KAG65...	[more]
XP_022975099.1	2.42e-151	99.01	LIM domain-containing protein PLIM2b-like [Cucurbita maxima] >XP_022975247.1 LIM...	[more]
XP_022942231.1	1.01e-145	87.45	LIM domain-containing protein PLIM2b-like isoform X1 [Cucurbita moschata]	[more]
XP_023540246.1	1.31e-145	98.47	LIM domain-containing protein PLIM2b-like isoform X2 [Cucurbita pepo subsp. pepo...	[more]
XP_023540245.1	9.05e-139	85.71	LIM domain-containing protein PLIM2b-like isoform X1 [Cucurbita pepo subsp. pepo...	[more]

BLAST of Csor.00g273920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVW8	7.06e-153	100.00	LIM domain-containing protein PLIM2b-like isoform X2 OS=Cucurbita moschata OX=36...	[more]
A0A6J1ICJ4	1.17e-151	99.01	LIM domain-containing protein PLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FNB1	4.91e-146	87.45	LIM domain-containing protein PLIM2b-like isoform X1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1IW81	1.94e-121	80.98	LIM domain-containing protein PLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1E9W7	7.89e-121	80.49	LIM domain-containing protein PLIM2c-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Csor.00g273920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01780.1	2.4e-81	68.81	GATA type zinc finger transcription factor family protein	[more]
AT3G61230.1	2.5e-75	64.42	GATA type zinc finger transcription factor family protein	[more]
AT2G45800.1	4.3e-75	66.00	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	2.5e-67	59.24	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	2.8e-66	60.99	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 102..154 e-value: 4.3E-13 score: 59.5 coord: 9..61 e-value: 3.3E-12 score: 56.6
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 103..158 e-value: 1.7E-10 score: 41.0 coord: 10..64 e-value: 5.8E-13 score: 48.9
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.1869
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 101..161 score: 12.4246
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 6..74 e-value: 7.9E-19 score: 69.6 coord: 97..167 e-value: 5.6E-18 score: 66.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..195
None	No IPR available	PANTHER	PTHR24206:SF69	LIM DOMAIN-CONTAINING PROTEIN PLIM2C	coord: 1..196
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..196
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 2..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 129..168
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 95..128
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g273920.m01	Csor.00g273920.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding