Csor.00g273770 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g273770
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	E3 ubiquitin-protein ligase RHA1B-like
Location	Csor_Chr06: 8179792 .. 8180343 (-)
RNA-Seq Expression	Csor.00g273770
Synteny	Csor.00g273770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCGCCGCCGATCGGAATCGGAATCGGAAACGGAAACGGAAACTCCTACCTCTCCGACCGCCATGGGCTACCCCGTAGGCTACTCCGACGTTTGTATCCCCAACGCCTTCCTCCATCTCCTTTTCTTCCTCGGCTATATTCGAAGCCTCATTATTTCAATCTTCCGATTTCTAGGGCTTTCCGATTTTCTCGAATCCACCATCGTTTGCCCCCAAAATCCTCCCTACATCTTCCACGATCGATCCGTATCGCCGCTCCTCATCGACGAATTCGTCCCCGTCGTCAAATTCTCCGACATTGTCGTCTCCACCAGAGCCGGATTTCCGCCGGAATGTTGCGCCGTTTGCCTCTGCGAGTTTCAGGACGATGAGGAGCTTAGGTTTCTGAAGAATTGCAAACACATTTTTCACAAGAAATGCTTGGACCGATGGATGATTCGCGATCAGAGAAGCTGTCCTCTCTGTAGAACCCTAATCGTGCCGGAGGAGTCAATTCCGCCGCTCATGGATTTTCCCGGCTGTTCTGAGTTTTTCGGCGACTATAGTTAG

mRNA sequence

ATGAACCGCCGCCGATCGGAATCGGAATCGGAAACGGAAACGGAAACTCCTACCTCTCCGACCGCCATGGGCTACCCCGTAGGCTACTCCGACGTTTGTATCCCCAACGCCTTCCTCCATCTCCTTTTCTTCCTCGGCTATATTCGAAGCCTCATTATTTCAATCTTCCGATTTCTAGGGCTTTCCGATTTTCTCGAATCCACCATCGTTTGCCCCCAAAATCCTCCCTACATCTTCCACGATCGATCCGTATCGCCGCTCCTCATCGACGAATTCGTCCCCGTCGTCAAATTCTCCGACATTGTCGTCTCCACCAGAGCCGGATTTCCGCCGGAATGTTGCGCCGTTTGCCTCTGCGAGTTTCAGGACGATGAGGAGCTTAGGTTTCTGAAGAATTGCAAACACATTTTTCACAAGAAATGCTTGGACCGATGGATGATTCGCGATCAGAGAAGCTGTCCTCTCTGTAGAACCCTAATCGTGCCGGAGGAGTCAATTCCGCCGCTCATGGATTTTCCCGGCTGTTCTGAGTTTTTCGGCGACTATAGTTAG

Coding sequence (CDS)

ATGAACCGCCGCCGATCGGAATCGGAATCGGAAACGGAAACGGAAACTCCTACCTCTCCGACCGCCATGGGCTACCCCGTAGGCTACTCCGACGTTTGTATCCCCAACGCCTTCCTCCATCTCCTTTTCTTCCTCGGCTATATTCGAAGCCTCATTATTTCAATCTTCCGATTTCTAGGGCTTTCCGATTTTCTCGAATCCACCATCGTTTGCCCCCAAAATCCTCCCTACATCTTCCACGATCGATCCGTATCGCCGCTCCTCATCGACGAATTCGTCCCCGTCGTCAAATTCTCCGACATTGTCGTCTCCACCAGAGCCGGATTTCCGCCGGAATGTTGCGCCGTTTGCCTCTGCGAGTTTCAGGACGATGAGGAGCTTAGGTTTCTGAAGAATTGCAAACACATTTTTCACAAGAAATGCTTGGACCGATGGATGATTCGCGATCAGAGAAGCTGTCCTCTCTGTAGAACCCTAATCGTGCCGGAGGAGTCAATTCCGCCGCTCATGGATTTTCCCGGCTGTTCTGAGTTTTTCGGCGACTATAGTTAG

Protein sequence

MNRRRSESESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLESTIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFGDYS

Homology

[Close]

BLAST of Csor.00g273770 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.9e-36
Identity = 78/147 (53.06%), Postives = 103/147 (70.07%), Query Frame = 0


Query: 23  MGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLESTIVCPQNPPY---IF 82
           MG+PVGY++V +P  F+  L  LG+IR+++ SIFRFLGLSDFLE     P    Y   I 
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIP 60

Query: 83  HDRS-VSPLLIDEFVPVVKFSDIVVSTRAGFP-PECCAVCLCEFQDDEELRFLKNCKHIF 142
             RS  S LLI E +PV+KF ++   T +G   PE CAVCL EF+ ++E+R+L+NC+HIF
Sbjct: 61  ETRSPFSALLIREILPVIKFEEL---TNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIF 120

Query: 143 HKKCLDRWMIRDQRSCPLCRTLIVPEE 165
           H+ CLDRWM  DQ++CPLCRT  VP+E
Sbjct: 121 HRSCLDRWMDHDQKTCPLCRTPFVPDE 144

[Close]

BLAST of Csor.00g273770 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-23
Identity = 56/160 (35.00%), Postives = 93/160 (58.13%), Query Frame = 0


Query: 23  MGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLESTIVCPQNPPYIFHDR 82
           MG P  + ++ IP   L  L+ +G+ R ++ ++  ++GL  FL+       +P  +    
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRL--AL 60

Query: 83  SVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELRFLKNCKHIFHKKCL 142
           S S  L +E +PVV+FSD++       P +CC VCL +F  D+++R L  C H+FH +CL
Sbjct: 61  STSATLANELIPVVRFSDLLTD-----PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCL 120

Query: 143 DRWMIR-DQRSCPLCRTLIVPEESIPPLMDFPGCSEFFGD 182
           DRW++  ++ +CP+CR   +PEE   P  D+ G S++F D
Sbjct: 121 DRWIVDCNKITCPICRNRFLPEEKSTP-FDW-GTSDWFRD 151

[Close]

BLAST of Csor.00g273770 vs. ExPASy Swiss-Prot
Match: Q9SUS4 (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-20
Identity = 54/161 (33.54%), Postives = 91/161 (56.52%), Query Frame = 0


Query: 23  MGYPVGY-SDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLESTIVCPQNPPYIFHD 82
           MG P  + +++ IP+  L +L+ +G+ R ++ ++  ++GL  FL+        P    H 
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNET--SAPDLTRHA 60

Query: 83  RSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELRFLKNCKHIFHKKC 142
            S S  L +E +PVV+FSD+        P +CC VCL +F+ D+++R L  C H+FH  C
Sbjct: 61  LSTSASLANELIPVVRFSDLPTD-----PEDCCTVCLSDFESDDKVRQLPKCGHVFHHYC 120

Query: 143 LDRWMI-RDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFGD 182
           LDRW++  ++  CP+CR   +P+E      D+   S++F D
Sbjct: 121 LDRWIVDYNKMKCPVCRHRFLPKEKYTQ-SDWGSGSDWFSD 153

[Close]

BLAST of Csor.00g273770 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 114 CAVCLCEFQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPP 169
           C+VCL EFQD+E+LR + NC H+FH  C+D W +++  +CPLCRT +  + S PP
Sbjct: 138 CSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVW-LQNNANCPLCRTRVSCDTSFPP 191

[Close]

BLAST of Csor.00g273770 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 44/133 (33.08%), Postives = 65/133 (48.87%), Query Frame = 0


Query: 39  LHLLFFLGYIRSLIISIFRFLGLSDFLESTIVCPQNPPYI--------------FHDRSV 98
           L ++FF+  I  L++  +     S+   S     QNP +                HD  +
Sbjct: 60  LSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQQLFHLHDSGL 119

Query: 99  SPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELRFLKNCKHIFHKKCLDR 158
              LID  +PV  + +I    +    P  CAVCLCEF +D++LR L NC H FH  C+D 
Sbjct: 120 DQALIDA-LPVFLYKEI----KGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDT 179

[Close]

BLAST of Csor.00g273770 vs. NCBI nr
Match: KAG6597135.1 (Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 381 bits (979), Expect = 1.04e-133
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MNRRRSESESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLG 60
           MNRRRSESESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLG
Sbjct: 1   MNRRRSESESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLG 60

Query: 61  LSDFLESTIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCE 120
           LSDFLESTIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCE
Sbjct: 61  LSDFLESTIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCE 120

Query: 121 FQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFG 180
           FQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFG
Sbjct: 121 FQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFG 180

Query: 181 DYS 183
           DYS
Sbjct: 181 DYS 183

[Close]

BLAST of Csor.00g273770 vs. NCBI nr
Match: XP_023539428.1 (E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374 bits (961), Expect = 5.81e-131
Identity = 180/183 (98.36%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MNRRRSESESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLG 60
           MNRRRSESESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLG
Sbjct: 1   MNRRRSESESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLG 60

Query: 61  LSDFLESTIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCE 120
           LSDFLES IVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFP ECCAVCLCE
Sbjct: 61  LSDFLESAIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPSECCAVCLCE 120

Query: 121 FQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFG 180
           FQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCR LIVPEESIPPLMDFPGCSEFFG
Sbjct: 121 FQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCRNLIVPEESIPPLMDFPGCSEFFG 180

Query: 181 DYS 183
           DYS
Sbjct: 181 DYS 183

[Close]

BLAST of Csor.00g273770 vs. NCBI nr
Match: KAG7028604.1 (E3 ubiquitin-protein ligase RHA1B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322 bits (825), Expect = 2.48e-110
Identity = 154/157 (98.09%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MNRRRSESESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLG 60
           MNRRR+ESESE+ETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLG
Sbjct: 1   MNRRRTESESESETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLG 60

Query: 61  LSDFLESTIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCE 120
           LSDFLESTIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCE
Sbjct: 61  LSDFLESTIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCE 120

Query: 121 FQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCR 157
           FQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLC+
Sbjct: 121 FQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCK 157

[Close]

BLAST of Csor.00g273770 vs. NCBI nr
Match: KAA0048956.1 (Zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 295 bits (756), Expect = 1.15e-99
Identity = 139/175 (79.43%), Postives = 155/175 (88.57%), Query Frame = 0


Query: 9   ESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLEST 68
           ++E E E   SPTAMGYPVGY+DV  PNAFLHLLFFLGYIRSLI+S+F+FLGLSDFLES 
Sbjct: 14  QTEPEPEPSLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESN 73

Query: 69  IVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELR 128
           +V P+NP  IFHDRSVS +LI+EFVPVVKF+DI+ +    FPPECCAVCLCEF DDEE+R
Sbjct: 74  VVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVE--FPPECCAVCLCEFHDDEEVR 133

Query: 129 FLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFGDYS 183
           FLKNCKHIFHK+CLDRWMIRDQRSCPLCRTLIVPEESIPPLMDF GC+EF GDYS
Sbjct: 134 FLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGCTEFSGDYS 186

[Close]

BLAST of Csor.00g273770 vs. NCBI nr
Match: TYK17611.1 (Zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 295 bits (755), Expect = 1.63e-99
Identity = 138/175 (78.86%), Postives = 155/175 (88.57%), Query Frame = 0


Query: 9   ESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLEST 68
           ++E E E   SPTAMGYPVGY+DV  PNAFLHLLFFLGYIRSLI+S+F+FLGLSDFLES 
Sbjct: 14  QTEPEPEPSLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESN 73

Query: 69  IVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELR 128
           +V P+NP  IFHDRSVS +LI+EFVPVVKF+DI+ +    FPPECCAVCLCEF DDEE+R
Sbjct: 74  VVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVE--FPPECCAVCLCEFHDDEEVR 133

Query: 129 FLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFGDYS 183
           FLKNCKH+FHK+CLDRWMIRDQRSCPLCRTLIVPEESIPPLMDF GC+EF GDYS
Sbjct: 134 FLKNCKHVFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGCTEFSGDYS 186

[Close]

BLAST of Csor.00g273770 vs. ExPASy TrEMBL
Match: A0A5A7U3X1 (Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001770 PE=4 SV=1)

HSP 1 Score: 295 bits (756), Expect = 5.57e-100
Identity = 139/175 (79.43%), Postives = 155/175 (88.57%), Query Frame = 0


Query: 9   ESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLEST 68
           ++E E E   SPTAMGYPVGY+DV  PNAFLHLLFFLGYIRSLI+S+F+FLGLSDFLES 
Sbjct: 14  QTEPEPEPSLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESN 73

Query: 69  IVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELR 128
           +V P+NP  IFHDRSVS +LI+EFVPVVKF+DI+ +    FPPECCAVCLCEF DDEE+R
Sbjct: 74  VVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVE--FPPECCAVCLCEFHDDEEVR 133

Query: 129 FLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFGDYS 183
           FLKNCKHIFHK+CLDRWMIRDQRSCPLCRTLIVPEESIPPLMDF GC+EF GDYS
Sbjct: 134 FLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGCTEFSGDYS 186

[Close]

BLAST of Csor.00g273770 vs. ExPASy TrEMBL
Match: A0A5D3D061 (Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004810 PE=4 SV=1)

HSP 1 Score: 295 bits (755), Expect = 7.91e-100
Identity = 138/175 (78.86%), Postives = 155/175 (88.57%), Query Frame = 0


Query: 9   ESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLEST 68
           ++E E E   SPTAMGYPVGY+DV  PNAFLHLLFFLGYIRSLI+S+F+FLGLSDFLES 
Sbjct: 14  QTEPEPEPSLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESN 73

Query: 69  IVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELR 128
           +V P+NP  IFHDRSVS +LI+EFVPVVKF+DI+ +    FPPECCAVCLCEF DDEE+R
Sbjct: 74  VVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVE--FPPECCAVCLCEFHDDEEVR 133

Query: 129 FLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFGDYS 183
           FLKNCKH+FHK+CLDRWMIRDQRSCPLCRTLIVPEESIPPLMDF GC+EF GDYS
Sbjct: 134 FLKNCKHVFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGCTEFSGDYS 186

[Close]

BLAST of Csor.00g273770 vs. ExPASy TrEMBL
Match: A0A0A0L3J4 (Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_3G121750 PE=4 SV=1)

HSP 1 Score: 284 bits (726), Expect = 2.07e-95
Identity = 133/175 (76.00%), Postives = 154/175 (88.00%), Query Frame = 0


Query: 9   ESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLEST 68
           ++E E E+  SPTAMGYP+GY+D+  PNAFLHLLFFLGYIRSLI+S+F+FLGLSDFLES 
Sbjct: 14  QTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESN 73

Query: 69  IVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELR 128
           +V P+NP  IF+DRSV  +LI++FVPVVKF+DIV +    FPPECCAVCLCEFQDD+E+R
Sbjct: 74  VVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVE--FPPECCAVCLCEFQDDDEVR 133

Query: 129 FLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFGDYS 183
           FLKNCKHIFHK+CLDRWMIRDQRSCPLCRTLIVPEESIPPLMDF  C+EF G YS
Sbjct: 134 FLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTEFSGYYS 186

[Close]

BLAST of Csor.00g273770 vs. ExPASy TrEMBL
Match: A0A6J1IWS3 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita maxima OX=3661 GN=LOC111479288 PE=4 SV=1)

HSP 1 Score: 269 bits (687), Expect = 8.22e-90
Identity = 127/161 (78.88%), Postives = 138/161 (85.71%), Query Frame = 0


Query: 23  MGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLESTIVCPQNPPYIFHDR 82
           MGYPVGY+DV   NAFLHLL FLGYIRSLIIS+FR LGL DFLES++V PQNP     D 
Sbjct: 1   MGYPVGYADVFFSNAFLHLLIFLGYIRSLIISLFRILGLPDFLESSVVWPQNPTPTIDDH 60

Query: 83  SVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELRFLKNCKHIFHKKCL 142
           SV P+ I+EF PVVKFSDI  +T AGFPPECCAVCLCEFQ DEE+RFLKNCKHIFHK+CL
Sbjct: 61  SVLPIPIEEFFPVVKFSDIFDATGAGFPPECCAVCLCEFQGDEEVRFLKNCKHIFHKECL 120

Query: 143 DRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFGDYS 183
           D WMIRDQ+SCPLCRTLIVPEESIPPL+DF GCSEF GDYS
Sbjct: 121 DGWMIRDQKSCPLCRTLIVPEESIPPLVDFAGCSEFSGDYS 161

[Close]

BLAST of Csor.00g273770 vs. ExPASy TrEMBL
Match: A0A6J1FAR8 (RING-H2 finger protein ATL75-like OS=Cucurbita moschata OX=3662 GN=LOC111442339 PE=4 SV=1)

HSP 1 Score: 269 bits (688), Expect = 3.75e-89
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 61  LSDFLESTIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCE 120
           LSDFLESTIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCE
Sbjct: 96  LSDFLESTIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCE 155

Query: 121 FQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFG 180
           FQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFG
Sbjct: 156 FQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFG 215

Query: 181 DYS 183
           DYS
Sbjct: 216 DYS 218

[Close]

BLAST of Csor.00g273770 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-37
Identity = 78/147 (53.06%), Postives = 103/147 (70.07%), Query Frame = 0


Query: 23  MGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLESTIVCPQNPPY---IF 82
           MG+PVGY++V +P  F+  L  LG+IR+++ SIFRFLGLSDFLE     P    Y   I 
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIP 60

Query: 83  HDRS-VSPLLIDEFVPVVKFSDIVVSTRAGFP-PECCAVCLCEFQDDEELRFLKNCKHIF 142
             RS  S LLI E +PV+KF ++   T +G   PE CAVCL EF+ ++E+R+L+NC+HIF
Sbjct: 61  ETRSPFSALLIREILPVIKFEEL---TNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIF 120

Query: 143 HKKCLDRWMIRDQRSCPLCRTLIVPEE 165
           H+ CLDRWM  DQ++CPLCRT  VP+E
Sbjct: 121 HRSCLDRWMDHDQKTCPLCRTPFVPDE 144

[Close]

BLAST of Csor.00g273770 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein )

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-33
Identity = 78/159 (49.06%), Postives = 104/159 (65.41%), Query Frame = 0


Query: 23  MGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLESTIVCPQN----PPYI 82
           MGYPVGY+++ +P  FLHLL  LG IR+LI + FR LGL DFLES  V   +    PPY+
Sbjct: 1   MGYPVGYTELLLPRIFLHLLSLLGLIRTLIDTGFRILGLPDFLESDPVSSSSSWLEPPYM 60

Query: 83  -----FHDRS-----VSPLLIDEFVPVVKFSDIVVSTRAGF--PPECCAVCLCEFQDDEE 142
                 H  S     V+  L  E +PV++FS++   TR GF    +CCAVCL EF++D+E
Sbjct: 61  STAAHHHQESSFFFPVAARLAGEILPVIRFSEL---TRPGFGSGSDCCAVCLHEFENDDE 120

Query: 143 LRFLKNCKHIFHKKCLDRWMI-RDQRSCPLCRTLIVPEE 165
           +R L NC+HIFH+ CLDRWM+  +Q +CPLCRT  + +E
Sbjct: 121 IRRLTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISDE 156

[Close]

BLAST of Csor.00g273770 vs. TAIR 10
Match: AT1G63840.1 (RING/U-box superfamily protein )

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-32
Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 23  MGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLESTIVC---PQNPPYIF 82
           MG+PVGYS++ +P  F +LL FLG IR LI ++F+ +GL DFLE   V    P  PP + 
Sbjct: 1   MGFPVGYSELLLPKIFFYLLSFLGLIRKLISTMFKIIGLPDFLEPEPVSTSWPDPPPTLT 60

Query: 83  HDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELRFLKNCKHIFHK 142
              S + +L  E +PVV+FSDI    R     ECCAVCL +F++D+E+R L NC+HIFH+
Sbjct: 61  KPDSAA-ILAGEMLPVVRFSDI---NRP--ESECCAVCLYDFENDDEIRRLTNCRHIFHR 120

Query: 143 KCLDRWMI-RDQRSCPLCRTLIVPE 164
            CLDRWM+  +Q +CPLCRT  +P+
Sbjct: 121 GCLDRWMMGYNQMTCPLCRTQFIPD 139

[Close]

BLAST of Csor.00g273770 vs. TAIR 10
Match: AT4G11360.1 (RING-H2 finger A1B )

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-24
Identity = 56/160 (35.00%), Postives = 93/160 (58.13%), Query Frame = 0


Query: 23  MGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLESTIVCPQNPPYIFHDR 82
           MG P  + ++ IP   L  L+ +G+ R ++ ++  ++GL  FL+       +P  +    
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRL--AL 60

Query: 83  SVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELRFLKNCKHIFHKKCL 142
           S S  L +E +PVV+FSD++       P +CC VCL +F  D+++R L  C H+FH +CL
Sbjct: 61  STSATLANELIPVVRFSDLLTD-----PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCL 120

Query: 143 DRWMIR-DQRSCPLCRTLIVPEESIPPLMDFPGCSEFFGD 182
           DRW++  ++ +CP+CR   +PEE   P  D+ G S++F D
Sbjct: 121 DRWIVDCNKITCPICRNRFLPEEKSTP-FDW-GTSDWFRD 151

[Close]

BLAST of Csor.00g273770 vs. TAIR 10
Match: AT4G11370.1 (RING-H2 finger A1A )

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21
Identity = 54/161 (33.54%), Postives = 91/161 (56.52%), Query Frame = 0


Query: 23  MGYPVGY-SDVCIPNAFLHLLFFLGYIRSLIISIFRFLGLSDFLESTIVCPQNPPYIFHD 82
           MG P  + +++ IP+  L +L+ +G+ R ++ ++  ++GL  FL+        P    H 
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNET--SAPDLTRHA 60

Query: 83  RSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCAVCLCEFQDDEELRFLKNCKHIFHKKC 142
            S S  L +E +PVV+FSD+        P +CC VCL +F+ D+++R L  C H+FH  C
Sbjct: 61  LSTSASLANELIPVVRFSDLPTD-----PEDCCTVCLSDFESDDKVRQLPKCGHVFHHYC 120

Query: 143 LDRWMI-RDQRSCPLCRTLIVPEESIPPLMDFPGCSEFFGD 182
           LDRW++  ++  CP+CR   +P+E      D+   S++F D
Sbjct: 121 LDRWIVDYNKMKCPVCRHRFLPKEKYTQ-SDWGSGSDWFSD 153

The following BLAST results are available for this feature:

BLAST of Csor.00g273770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF92	5.9e-36	53.06	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9SUS5	3.4e-23	35.00	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ...	[more]
Q9SUS4	1.6e-20	33.54	Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q9LSW9	1.7e-11	50.91	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q8GW38	2.3e-11	33.08	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]

BLAST of Csor.00g273770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597135.1	1.04e-133	100.00	Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp...	[more]
XP_023539428.1	5.81e-131	98.36	E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo]	[more]
KAG7028604.1	2.48e-110	98.09	E3 ubiquitin-protein ligase RHA1B, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0048956.1	1.15e-99	79.43	Zinc finger protein [Cucumis melo var. makuwa]	[more]
TYK17611.1	1.63e-99	78.86	Zinc finger protein [Cucumis melo var. makuwa]	[more]

BLAST of Csor.00g273770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3X1	5.57e-100	79.43	Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G...	[more]
A0A5D3D061	7.91e-100	78.86	Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G...	[more]
A0A0A0L3J4	2.07e-95	76.00	Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_3G121750 PE=4 SV=1	[more]
A0A6J1IWS3	8.22e-90	78.88	E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita maxima OX=3661 GN=LOC1114792...	[more]
A0A6J1FAR8	3.75e-89	100.00	RING-H2 finger protein ATL75-like OS=Cucurbita moschata OX=3662 GN=LOC111442339 ...	[more]

BLAST of Csor.00g273770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61460.1	4.2e-37	53.06	brassinosteroid-responsive RING-H2	[more]
AT5G41400.1	1.3e-33	49.06	RING/U-box superfamily protein	[more]
AT1G63840.1	1.8e-32	49.66	RING/U-box superfamily protein	[more]
AT4G11360.1	2.4e-24	35.00	RING-H2 finger A1B	[more]
AT4G11370.1	1.1e-21	33.54	RING-H2 finger A1A	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 114..156 e-value: 5.5E-6 score: 35.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 114..157 e-value: 5.7E-11 score: 42.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 114..157 score: 12.607302
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 96..163 e-value: 2.5E-16 score: 60.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR45969:SF10	BRH1 RING FINGER PROTEIN	coord: 23..164
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 23..164
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 113..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g273770.m01	Csor.00g273770.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity