Csor.00g272980 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g272980
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	La-related protein 6 isoform 1
Location	Csor_Chr12: 12902410 .. 12904286 (+)
RNA-Seq Expression	Csor.00g272980
Synteny	Csor.00g272980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTGGCCTCATCGCAGCTCAGCTTTCTCTCCACCACCCTCTCCTTCTCCTCCGCCCCCACCCCTCGCCGGTCCAACAACATCCTCCATTCTTTCCATCCTATAATCGCCTCTAAACTTCCTCCCCCCGCCGATGATCCTAAGTAAGTTCGATTCCGCGATTTCGTTTTAGTTTTGAGTCATTTAGGTTTCTGATTGATTGATTGAATCGATTTCTGGTTTTTTTTTTATGTGTAGTGGATTAGAGAGGGGAAATGAGAATCGACTAGCGAAGCTTGCGATTGTTACTCTGGCGGCTGGGGTTTTGTCATTGGGATCGGTTCATGATGCGTCGGCCGCTAAGACCGGTGGCCGAGTTGGCGGCCAGGCGTTCCGGTCGGCGGCTCCCCGGTCTTCATCGCCGAGAATCAATAACAATTCCAGGTATCAAAGATTGCTAGTAATTTGCTTTGAATTTTGTTAGTTGAGTTGATGATTGGCTTGAACTTTGATGCTCTGTAGAACAGTATATGAACTGAAATTTATGAAACTATTACACAAATGATTGAGACTACATTGAAACTACAAATTATAATGATGAGATTTCTAGAAAAGTTAACTCAGAATCCATTTTAAATTTGATGGATATAATGTAAACTAAATTTGAATAGCTAAAAGTTTAAAGATTAAAATAGGATGAATTCTATAGTATAGAGACCGAAATGATAGTTTAAGTAGACCTTCGCAGTCTAGAGACAAGAGAACGAAATTGTTCTTGTACTTACACAATCTAGAAGAAACAAAAACGTGTATTTTTTTGAAAATTACTTCATTTTGCTCGACTACTACTACGAAGGTCAAATCTTATACCTATTTATACTAGTAGGAAAATACGTCAAAAGATGTCAATATCGATTATCGATACATGTGAGCTTTCACCCATGTTTGAATACATTAATGTATCAAATTATTCATGTATCTCAACTATTCATGTATTCAACATGTGTCTAGATTAGTTCAAACCGTATTAGCCATGGAAGGCTCGCTTCTTATGCTATAATCATTGCCCACACCTTAGAGTTTGAACTTTAGAAGCTTGAAAGATATCTCTAAACGGTTTACGCCCTTACTATAAGGGTCACTTTTGGGTGAATAAGAGTGTGTTTGAAATGACTTCTAAAGTGTTTAAAAAGACATTTTTAAATATAACCGCTTGTTTCCGATCTTACTTCTTATGCTATACTCATTGTCACACCTTACGAACTTTTGGAAAAGGCTTCCGCTACAATACTCTAAGAACTTAGAGCTTGAGCTTTAGAAGTTTGAAAGTATCTTTAAACTGTTTAAGCTTTTACTATAAAGTCACTTTTGAGCGAGTAAAAGTGTGTTTGAAATGACTTCTCAAGTGCTTAAAAAGACTCTTGCAAGTCAAACAGATCGTTTATGATATTGCTTCTTATGCTTTACTCATTGTCCACACCTTGCTAACTTTTGGACAAGGCTTCCGCTACAACACTCTGAGAACTTAGAGCTTGAAAAGCTTGAAAAGCTTGAAAGATATCCTTAAACCGTTTAAGCCCTTACTATAAAGGTCACATTTGAGTCGTTTCCGATCTTGCTTCAAATCTATGTTGTGTGTTTGATTCGACAGGACAAATATCTACATAAACCCGAGAGTAGCGCCTCCTCTAGTAGGTGGGTATGGTTACGGTGTGCCATACTATGGAGGAGGATGGGGATGGTCGCCATTTTCATTCTTTGCACCAACCCCAAGTGTAGCTGTAGGCATTGGAGGAGGTTTTGATGTTCTTGTGCTCTTCATTTTTCTTGGAACTGTTGCAGCTTTTGTGAGAAGGTTCCTTGGAGGAAGAGGAGAAGATGATGATGATTATTAA

mRNA sequence

ATGTCGTTGGCCTCATCGCAGCTCAGCTTTCTCTCCACCACCCTCTCCTTCTCCTCCGCCCCCACCCCTCGCCGGTCCAACAACATCCTCCATTCTTTCCATCCTATAATCGCCTCTAAACTTCCTCCCCCCGCCGATGATCCTAATGGATTAGAGAGGGGAAATGAGAATCGACTAGCGAAGCTTGCGATTGTTACTCTGGCGGCTGGGGTTTTGTCATTGGGATCGGTTCATGATGCGTCGGCCGCTAAGACCGGTGGCCGAGTTGGCGGCCAGGCGTTCCGGTCGGCGGCTCCCCGGTCTTCATCGCCGAGAATCAATAACAATTCCAGGACAAATATCTACATAAACCCGAGAGTAGCGCCTCCTCTAGTAGGTGGGTATGGTTACGGTGTGCCATACTATGGAGGAGGATGGGGATGGTCGCCATTTTCATTCTTTGCACCAACCCCAAGTGTAGCTGTAGGCATTGGAGGAGGTTTTGATGTTCTTGTGCTCTTCATTTTTCTTGGAACTGTTGCAGCTTTTGTGAGAAGGTTCCTTGGAGGAAGAGGAGAAGATGATGATGATTATTAA

Coding sequence (CDS)

ATGTCGTTGGCCTCATCGCAGCTCAGCTTTCTCTCCACCACCCTCTCCTTCTCCTCCGCCCCCACCCCTCGCCGGTCCAACAACATCCTCCATTCTTTCCATCCTATAATCGCCTCTAAACTTCCTCCCCCCGCCGATGATCCTAATGGATTAGAGAGGGGAAATGAGAATCGACTAGCGAAGCTTGCGATTGTTACTCTGGCGGCTGGGGTTTTGTCATTGGGATCGGTTCATGATGCGTCGGCCGCTAAGACCGGTGGCCGAGTTGGCGGCCAGGCGTTCCGGTCGGCGGCTCCCCGGTCTTCATCGCCGAGAATCAATAACAATTCCAGGACAAATATCTACATAAACCCGAGAGTAGCGCCTCCTCTAGTAGGTGGGTATGGTTACGGTGTGCCATACTATGGAGGAGGATGGGGATGGTCGCCATTTTCATTCTTTGCACCAACCCCAAGTGTAGCTGTAGGCATTGGAGGAGGTTTTGATGTTCTTGTGCTCTTCATTTTTCTTGGAACTGTTGCAGCTTTTGTGAGAAGGTTCCTTGGAGGAAGAGGAGAAGATGATGATGATTATTAA

Protein sequence

MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY

Homology

[Close]

BLAST of Csor.00g272980 vs. NCBI nr
Match: XP_022938204.1 (uncharacterized protein LOC111444353 [Cucurbita moschata] >KAG6586091.1 hypothetical protein SDJN03_18824, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 375 bits (964), Expect = 3.73e-131
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA 60
           MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA 60

Query: 61  KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120
           KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV
Sbjct: 61  KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120

Query: 121 APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF 180
           APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF
Sbjct: 121 APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF 180

Query: 181 LGGRGEDDDDY 191
           LGGRGEDDDDY
Sbjct: 181 LGGRGEDDDDY 191

[Close]

BLAST of Csor.00g272980 vs. NCBI nr
Match: XP_023536753.1 (uncharacterized protein LOC111798034 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 373 bits (957), Expect = 4.52e-130
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA 60
           MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA 60

Query: 61  KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120
           KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV
Sbjct: 61  KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120

Query: 121 APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF 180
           APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF
Sbjct: 121 APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF 180

Query: 181 LGGRGEDDDD 190
           LGGRGEDDDD
Sbjct: 181 LGGRGEDDDD 190

[Close]

BLAST of Csor.00g272980 vs. NCBI nr
Match: KAG7020916.1 (hypothetical protein SDJN02_17604 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372 bits (955), Expect = 8.80e-130
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA 60
           MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPP ADDPNGLERGNENRLA
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPHADDPNGLERGNENRLA 60

Query: 61  KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120
           KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV
Sbjct: 61  KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120

Query: 121 APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF 180
           APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF
Sbjct: 121 APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF 180

Query: 181 LGGRGEDDDDY 191
           LGGRGEDDDDY
Sbjct: 181 LGGRGEDDDDY 191

[Close]

BLAST of Csor.00g272980 vs. NCBI nr
Match: XP_022969609.1 (uncharacterized protein LOC111468585 [Cucurbita maxima])

HSP 1 Score: 369 bits (948), Expect = 1.03e-128
Identity = 188/191 (98.43%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA 60
           MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPAD+PNGLERGNENRLA
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADNPNGLERGNENRLA 60

Query: 61  KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120
           KLAIVTLAAGVL+LGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV
Sbjct: 61  KLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120

Query: 121 APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF 180
           APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF
Sbjct: 121 APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF 180

Query: 181 LGGRGEDDDDY 191
           LGGR EDDDDY
Sbjct: 181 LGGREEDDDDY 191

[Close]

BLAST of Csor.00g272980 vs. NCBI nr
Match: XP_038889537.1 (uncharacterized protein LOC120079434 isoform X1 [Benincasa hispida])

HSP 1 Score: 301 bits (771), Expect = 1.05e-101
Identity = 165/195 (84.62%), Postives = 175/195 (89.74%), Query Frame = 0


Query: 1   MSLASSQLSFLSTTLSFS-SAPTPRRSNNILHSFHPIIASKLPPPADDPNGL-ERGNENR 60
           MSLASSQLSFLST  SFS S  TPRR+NN+LHS +  ++ KLPP ADDPNGL  RG+ENR
Sbjct: 1   MSLASSQLSFLSTAFSFSFSVRTPRRTNNLLHSSNAGVSCKLPPAADDPNGLLNRGSENR 60

Query: 61  LAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVL+LGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYG--YGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAF 180
           RVAPPLVGGYG  YGVPYYGG WGWSPFSFFAP+P+VAVGIGGGFD+L LFI LGTVAAF
Sbjct: 121 RVAPPLVGGYGFGYGVPYYGG-WGWSPFSFFAPSPAVAVGIGGGFDLLFLFILLGTVAAF 180

Query: 181 VRRFLGGRGEDDDDY 191
           VRRF G R EDDDDY
Sbjct: 181 VRRFFGRR-EDDDDY 193

[Close]

BLAST of Csor.00g272980 vs. ExPASy TrEMBL
Match: A0A6J1FDE3 (uncharacterized protein LOC111444353 OS=Cucurbita moschata OX=3662 GN=LOC111444353 PE=4 SV=1)

HSP 1 Score: 375 bits (964), Expect = 1.81e-131
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA 60
           MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA 60

Query: 61  KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120
           KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV
Sbjct: 61  KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120

Query: 121 APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF 180
           APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF
Sbjct: 121 APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF 180

Query: 181 LGGRGEDDDDY 191
           LGGRGEDDDDY
Sbjct: 181 LGGRGEDDDDY 191

[Close]

BLAST of Csor.00g272980 vs. ExPASy TrEMBL
Match: A0A6J1I348 (uncharacterized protein LOC111468585 OS=Cucurbita maxima OX=3661 GN=LOC111468585 PE=4 SV=1)

HSP 1 Score: 369 bits (948), Expect = 4.97e-129
Identity = 188/191 (98.43%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA 60
           MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPAD+PNGLERGNENRLA
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADNPNGLERGNENRLA 60

Query: 61  KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120
           KLAIVTLAAGVL+LGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV
Sbjct: 61  KLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120

Query: 121 APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF 180
           APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF
Sbjct: 121 APPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRF 180

Query: 181 LGGRGEDDDDY 191
           LGGR EDDDDY
Sbjct: 181 LGGREEDDDDY 191

[Close]

BLAST of Csor.00g272980 vs. ExPASy TrEMBL
Match: A0A0A0LGT3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060360 PE=4 SV=1)

HSP 1 Score: 285 bits (729), Expect = 1.14e-95
Identity = 152/194 (78.35%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNI--LHSFHPIIASKLPPPADDPNGLERGNENR 60
           MSL SSQL+FLST  SFSS   P R++N+  LHS +P+I+ KLPPP+ DP    +GNENR
Sbjct: 1   MSLPSSQLTFLSTAFSFSSFSPPPRTHNLRLLHSSNPLISCKLPPPSHDP----KGNENR 60

Query: 61  LAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120
           +A LAIVTL AGVL+LGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYINP
Sbjct: 61  VANLAIVTLMAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVG-GYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFV 180
           RVAPPL G GYGYGVPYYGGGWGWSPFSFFAP+P+VAVGIGGG DVL  FI LGTVAAFV
Sbjct: 121 RVAPPLGGYGYGYGVPYYGGGWGWSPFSFFAPSPAVAVGIGGGLDVLFFFILLGTVAAFV 180

Query: 181 RRFLGGRGEDDDDY 191
           RR  G R EDDDDY
Sbjct: 181 RRIFGRREEDDDDY 190

[Close]

BLAST of Csor.00g272980 vs. ExPASy TrEMBL
Match: A0A6J1DIH1 (uncharacterized protein LOC111020818 OS=Momordica charantia OX=3673 GN=LOC111020818 PE=4 SV=1)

HSP 1 Score: 275 bits (703), Expect = 1.36e-91
Identity = 153/200 (76.50%), Postives = 166/200 (83.00%), Query Frame = 0


Query: 1   MSLASSQLSFLSTTLSFSSAPT---PRRSNNILHSFHPIIASKLPPPADDPNGLE----R 60
           M+LASSQ SFL+  LS ++A     PRR   +LHS +  ++SKLP PADDP+G       
Sbjct: 1   MALASSQQSFLTNVLSAAAAAAARCPRRMRKLLHSSNAAVSSKLP-PADDPDGFSFKSGS 60

Query: 61  GNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTN 120
           GNENRLAKLAIVTLAAGVL+LGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTN
Sbjct: 61  GNENRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTN 120

Query: 121 IYINPRVAPPLVGGYG--YGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLG 180
           IYINP VAPPLVGGYG  YGVPYYGG WGWSPFSFFAP PSVAVGIGGGFD+L LFIFLG
Sbjct: 121 IYINPPVAPPLVGGYGFGYGVPYYGG-WGWSPFSFFAPGPSVAVGIGGGFDLLFLFIFLG 180

Query: 181 TVAAFVRRFLGGRGEDDDDY 191
           +VAA VRRF G R +DDDDY
Sbjct: 181 SVAAVVRRFFGTREDDDDDY 198

[Close]

BLAST of Csor.00g272980 vs. ExPASy TrEMBL
Match: A0A5A7U097 (La-related protein 6 isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00020 PE=4 SV=1)

HSP 1 Score: 271 bits (694), Expect = 2.27e-90
Identity = 145/193 (75.13%), Postives = 161/193 (83.42%), Query Frame = 0


Query: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA 60
           MSL SSQLSFLST  SFS +P    +  +L+S   +++ KLPP +DDP    +GNENR+A
Sbjct: 1   MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDP----KGNENRVA 60

Query: 61  KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120
           KLAIVTL AG+L+LGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYINPRV
Sbjct: 61  KLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRV 120

Query: 121 APPLVGGYG--YGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVR 180
           APPLVGGYG  YGVPYYGG WGWSPFSFFAP+P+VAVGIGGG DVL  FI LG+VAAFVR
Sbjct: 121 APPLVGGYGFGYGVPYYGG-WGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVR 180

Query: 181 RFLGGRGEDDDDY 191
           + LG R  DDDDY
Sbjct: 181 KILGRREADDDDY 188

[Close]

BLAST of Csor.00g272980 vs. TAIR 10
Match: AT5G57345.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 196.8 bits (499), Expect = 1.6e-50
Identity = 109/189 (57.67%), Postives = 134/189 (70.90%), Query Frame = 0


Query: 2   SLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAK 61
           ++ASS+ SFLS   SF  +  P+ + N+     P          DD     R NEN+LAK
Sbjct: 5   AIASSRQSFLSNNFSFQHSFKPKSNVNLT---RPNSICCKSSHHDDETDSSRKNENQLAK 64

Query: 62  LAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRVA 121
           LAI TLA GVL+LGSV DA AAK+GGR+GGQAFRS+APR   PRINN SRTNIY+NP+VA
Sbjct: 65  LAIATLAVGVLALGSVGDAFAAKSGGRIGGQAFRSSAPR-PPPRINNRSRTNIYVNPQVA 124

Query: 122 PPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFL 181
           PPL+GGYGYG     GG+GWSPFSFFAP P+VAVG+GGGFD+L+LF+F G  +A  R F 
Sbjct: 125 PPLIGGYGYGY----GGYGWSPFSFFAPGPAVAVGVGGGFDLLLLFMFFGAASAVARNFF 184

Query: 182 GGRGEDDDD 191
             R ++DD+
Sbjct: 185 RSRNDEDDE 185

[Close]

BLAST of Csor.00g272980 vs. TAIR 10
Match: AT1G54520.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.7e-04
Identity = 43/130 (33.08%), Postives = 57/130 (43.85%), Query Frame = 0


Query: 59  LAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 118
           L K AI  +  G+L     + A AA +GGR+GG +F      SS  R +++S +  Y  P
Sbjct: 83  LKKPAIAAVLLGLLLFYDPNSALAA-SGGRIGGNSF------SSRSRSSSSSSSQSYSVP 142

Query: 119 RVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVR 178
           R + P         PYYG     SPF      P+V  G  GGF    L +        V 
Sbjct: 143 RTSNPSFSYSARTAPYYGP----SPFGGGFVGPAVGFGF-GGFSSFSLILVGFAAFVLVS 200

Query: 179 RFLGGRGEDD 189
            FL  R +DD
Sbjct: 203 GFLSDRSQDD 200

The following BLAST results are available for this feature:

BLAST of Csor.00g272980 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g272980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938204.1	3.73e-131	100.00	uncharacterized protein LOC111444353 [Cucurbita moschata] >KAG6586091.1 hypothet...	[more]
XP_023536753.1	4.52e-130	100.00	uncharacterized protein LOC111798034 [Cucurbita pepo subsp. pepo]	[more]
KAG7020916.1	8.80e-130	99.48	hypothetical protein SDJN02_17604 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022969609.1	1.03e-128	98.43	uncharacterized protein LOC111468585 [Cucurbita maxima]	[more]
XP_038889537.1	1.05e-101	84.62	uncharacterized protein LOC120079434 isoform X1 [Benincasa hispida]	[more]

BLAST of Csor.00g272980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDE3	1.81e-131	100.00	uncharacterized protein LOC111444353 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]
A0A6J1I348	4.97e-129	98.43	uncharacterized protein LOC111468585 OS=Cucurbita maxima OX=3661 GN=LOC111468585...	[more]
A0A0A0LGT3	1.14e-95	78.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060360 PE=4 SV=1	[more]
A0A6J1DIH1	1.36e-91	76.50	uncharacterized protein LOC111020818 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A5A7U097	2.27e-90	75.13	La-related protein 6 isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Csor.00g272980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57345.1	1.6e-50	57.67	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT1G54520.1	1.7e-04	33.08	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..109
None	No IPR available	PANTHER	PTHR37768	OS06G0694800 PROTEIN	coord: 1..191
None	No IPR available	PANTHER	PTHR37768:SF2	OS06G0694800 PROTEIN	coord: 1..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g272980.m01	Csor.00g272980.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071470	cellular response to osmotic stress
biological_process	GO:0034599	cellular response to oxidative stress
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane