Csor.00g272150 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g272150
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	photosystem I reaction center subunit IV, chloroplastic-like
Location	Csor_Chr12: 13836050 .. 13837019 (-)
RNA-Seq Expression	Csor.00g272150
Synteny	Csor.00g272150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCTATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCTGCCGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAGCCAGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGGGTGAAATCGATCCATCAAATTTGAATCTTTAATCTTTTGAGTAATTTTGGACGCTCAAATCTTGTCATGGATTTGAACAGGTGAAGATTTTAAGGAGAGAATCCTATTGGTACAAGGATGTTGGATCTGTTGTCACGGTTGACCAGGTGCGACACTTACAATTTACTTAATTTTATTATGTTTGTTTGTTCATGTTAGAGTGGTTAAGGTTTATGAGGATCTATGTCTTGTTAAGTGGTTAAGAATGTTTTGTTTTGAAATAGGTTCTTGTTTATGTTAAAATGGACCGTGTTTTGTTGTTGTTCGATGACTATTTAGTTTTTAGTTTTCGAGAAAATCGTACTTATTTTCTTATAAATTTTTAGAACGATAAGCTGTTGAGCTTGATTTCTCGAAAATCTAGTGTTTCTTCTAACCATCTTTCGAAATTTCTTCATTTTGCGATTCACGTTTTAAATTAAAATTTACTAATCACTAATTCAGTGGTCGAGATTAAGATATAATCTCGACCCGTAATAAGAAGTTTGAATAGACAGCAAATGAGTTGTAGAACGTTCGTATAGATTGATTAACGATTAATGTGTGAATGATATTTTGCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAA

mRNA sequence

ATGGCTGCCTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCTATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCTGCCGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAGCCAGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGAAGATTTTAAGGAGAGAATCCTATTGGTACAAGGATGTTGGATCTGTTGTCACGGTTGACCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAA

Coding sequence (CDS)

ATGGCTGCCTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCTATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCTGCCGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAGCCAGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGAAGATTTTAAGGAGAGAATCCTATTGGTACAAGGATGTTGGATCTGTTGTCACGGTTGACCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAA

Protein sequence

MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

Homology

[Close]

BLAST of Csor.00g272150 vs. ExPASy Swiss-Prot
Match: Q41229 (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEB PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.7e-33
Identity = 87/145 (60.00%), Postives = 108/145 (74.48%), Query Frame = 0


Query: 1   MAASNLSCIASGVII--PSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAP 60
           MA+S+++  ASG ++  P+  T +++ R S + F    + + +   RLVVRAA +   A 
Sbjct: 1   MASSSMASAASGFMVATPNIATSNTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEE---AA 60

Query: 61  PPAAAATADAPAEAPK-PKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPV 120
           PPAA ATA+  A   K  KP PIGPKRGTKV++LR+ESYWYK VGSVV VDQDPNTRYPV
Sbjct: 61  PPAATATAEGEAPPAKAAKPPPIGPKRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPV 120

Query: 121 VVRFNKVNYASVSTNNYALDEIEEV 143
           VVRFNKVNYA+VSTNNYALDE+EEV
Sbjct: 121 VVRFNKVNYANVSTNNYALDEVEEV 142

[Close]

BLAST of Csor.00g272150 vs. ExPASy Swiss-Prot
Match: Q41228 (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEA PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-33
Identity = 92/146 (63.01%), Postives = 110/146 (75.34%), Query Frame = 0


Query: 1   MAASNLSCIASGVII--PSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAP 60
           MA+ N++  AS  ++  P+  + +++SR + + F  KN  S +   RLVVRAA +   A 
Sbjct: 1   MASCNMASAASNFLVATPNVASNTNTSRTTMLFFSSKNYGSTAP--RLVVRAAEE---AA 60

Query: 61  PPAAAATADAPAEAP--KPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYP 120
           PPAAAATA+ PAEAP    KP PIGPKRGTKV+ILR+ESYWYK  GSVV  DQDPNTRYP
Sbjct: 61  PPAAAATAE-PAEAPVKAAKPPPIGPKRGTKVRILRKESYWYKGTGSVVACDQDPNTRYP 120

Query: 121 VVVRFNKVNYASVSTNNYALDEIEEV 143
           VVVRFNKVNYA+VSTNNYALDEIEEV
Sbjct: 121 VVVRFNKVNYANVSTNNYALDEIEEV 140

[Close]

BLAST of Csor.00g272150 vs. ExPASy Swiss-Prot
Match: Q9S831 (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.1e-32
Identity = 87/137 (63.50%), Postives = 100/137 (72.99%), Query Frame = 0


Query: 14  IIPSSTT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAA-----PPPAAAATA 73
           ++P++ T    +SS  SSV+F P      +   RLVVRAA D A A       PAAAA  
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMR----NAGSRLVVRAAEDPAPASSSSKDSPAAAAAP 70

Query: 74  DAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNY 133
           D  A A KPKP PIGPKRG+KVKILRRESYW+K+VGSVV VDQDP TRYPVVVRF KVNY
Sbjct: 71  DG-ATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNY 130

Query: 134 ASVSTNNYALDEIEEVA 144
           A++STNNYALDE+EEVA
Sbjct: 131 ANISTNNYALDEVEEVA 142

[Close]

BLAST of Csor.00g272150 vs. ExPASy Swiss-Prot
Match: P12354 (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-31
Identity = 82/127 (64.57%), Postives = 94/127 (74.02%), Query Frame = 0


Query: 17  SSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPK 76
           +S   S + R       P  + S  RS RLVVR AA+EAAA P AA+   +AP  A   K
Sbjct: 2   ASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVR-AAEEAAAAPAAASPEGEAPKAA--AK 61

Query: 77  PAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYAL 136
           P PIGPKRG+KV+I+R+ESYWYK VGSVV VDQDP TRYPVVVRFNKVNYA+VSTNNYAL
Sbjct: 62  PPPIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYAL 121

Query: 137 DEIEEVA 144
           DEI+EVA
Sbjct: 122 DEIQEVA 125

[Close]

BLAST of Csor.00g272150 vs. ExPASy Swiss-Prot
Match: Q9S714 (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE2 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-29
Identity = 82/137 (59.85%), Postives = 96/137 (70.07%), Query Frame = 0


Query: 15  IPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAAT-------AD 74
           +P++    SS   + V+F P  S       RLVVRAA D     PPA A++       A 
Sbjct: 16  VPAAIGGGSSKSTTIVSFLPMRSF----GSRLVVRAAED----TPPATASSDSSSTTAAA 75

Query: 75  APAEAP--KPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVN 134
           APA+ P  K KP PIGPKRG+KVKILR+ESYWYK+VGSVV VDQDP TRYPVVVRF KVN
Sbjct: 76  APAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVN 135

Query: 135 YASVSTNNYALDEIEEV 143
           YA++STNNYALDE+EEV
Sbjct: 136 YANISTNNYALDEVEEV 144

[Close]

BLAST of Csor.00g272150 vs. NCBI nr
Match: XP_022937722.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata] >KAG6586174.1 Photosystem I reaction center subunit IV, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021006.1 Photosystem I reaction center subunit IV, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263 bits (672), Expect = 3.34e-88
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60
           MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP
Sbjct: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEVA 143
           FNKVNYASVSTNNYALDEIEEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of Csor.00g272150 vs. NCBI nr
Match: XP_023536804.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259 bits (663), Expect = 7.87e-87
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60
           MAASNLSCIASGVIIPSS TISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAPAEAPKPKPAPIGPKRGTKVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEVA 143
           FNKVNYASVSTNNYALDEIEEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of Csor.00g272150 vs. NCBI nr
Match: XP_022965997.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 259 bits (662), Expect = 1.12e-86
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60
           MAASNLSCIASGVIIPSS TISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAPAE PKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEVPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEVA 143
           FNKVNYASVSTNNYALDEIEEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of Csor.00g272150 vs. NCBI nr
Match: XP_022144405.1 (photosystem I reaction center subunit IV, chloroplastic-like [Momordica charantia])

HSP 1 Score: 226 bits (576), Expect = 1.35e-73
Identity = 125/143 (87.41%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60
           MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPP
Sbjct: 1   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAP E  KPKPAPIGPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEVA 143
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEVEEVA 141

[Close]

BLAST of Csor.00g272150 vs. NCBI nr
Match: XP_008441802.1 (PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo])

HSP 1 Score: 225 bits (574), Expect = 3.21e-73
Identity = 127/144 (88.19%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSS-RPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60
           MAASNLSCIASGV+IPSSTTISSSS R SS+AFFPKNS SISRS RLV+RAAA + AAPP
Sbjct: 3   MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPP 62

Query: 61  PAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVV 120
           P AAA A A AE PKPKPAPIGPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 63  PPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 122

Query: 121 RFNKVNYASVSTNNYALDEIEEVA 143
           RFNKVNYASVSTNNYALDEIEEVA
Sbjct: 123 RFNKVNYASVSTNNYALDEIEEVA 146

[Close]

BLAST of Csor.00g272150 vs. ExPASy TrEMBL
Match: A0A6J1FC09 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444038 PE=3 SV=1)

HSP 1 Score: 263 bits (672), Expect = 1.62e-88
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60
           MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP
Sbjct: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEVA 143
           FNKVNYASVSTNNYALDEIEEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of Csor.00g272150 vs. ExPASy TrEMBL
Match: A0A6J1HLT8 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111465716 PE=3 SV=1)

HSP 1 Score: 259 bits (662), Expect = 5.41e-87
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60
           MAASNLSCIASGVIIPSS TISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAPAE PKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEVPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEVA 143
           FNKVNYASVSTNNYALDEIEEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of Csor.00g272150 vs. ExPASy TrEMBL
Match: A0A6J1CRI6 (photosystem I reaction center subunit IV, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111014100 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 6.53e-74
Identity = 125/143 (87.41%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60
           MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPP
Sbjct: 1   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAP E  KPKPAPIGPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEVA 143
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEVEEVA 141

[Close]

BLAST of Csor.00g272150 vs. ExPASy TrEMBL
Match: A0A1S3B3T3 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103485855 PE=3 SV=1)

HSP 1 Score: 225 bits (574), Expect = 1.55e-73
Identity = 127/144 (88.19%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSS-RPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60
           MAASNLSCIASGV+IPSSTTISSSS R SS+AFFPKNS SISRS RLV+RAAA + AAPP
Sbjct: 3   MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPP 62

Query: 61  PAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVV 120
           P AAA A A AE PKPKPAPIGPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 63  PPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 122

Query: 121 RFNKVNYASVSTNNYALDEIEEVA 143
           RFNKVNYASVSTNNYALDEIEEVA
Sbjct: 123 RFNKVNYASVSTNNYALDEIEEVA 146

[Close]

BLAST of Csor.00g272150 vs. ExPASy TrEMBL
Match: A0A0A0LJQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1)

HSP 1 Score: 214 bits (545), Expect = 4.56e-68
Identity = 124/144 (86.11%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSS-RPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60
           MAASNLSCIASGV+IPSSTTISSSS R SS+AFFPKNS SISRS RLV+RA+ DEAA PP
Sbjct: 79  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAS-DEAA-PP 138

Query: 61  PAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVV 120
           PAA A   A  E PKPKPAPIGPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 139 PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 198

Query: 121 RFNKVNYASVSTNNYALDEIEEVA 143
           RFNKVNYASVSTNNYALDEI+EVA
Sbjct: 199 RFNKVNYASVSTNNYALDEIQEVA 220

[Close]

BLAST of Csor.00g272150 vs. TAIR 10
Match: AT4G28750.1 (Photosystem I reaction centre subunit IV / PsaE protein )

HSP 1 Score: 139.4 bits (350), Expect = 2.2e-33
Identity = 87/137 (63.50%), Postives = 100/137 (72.99%), Query Frame = 0


Query: 14  IIPSSTT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAA-----PPPAAAATA 73
           ++P++ T    +SS  SSV+F P      +   RLVVRAA D A A       PAAAA  
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMR----NAGSRLVVRAAEDPAPASSSSKDSPAAAAAP 70

Query: 74  DAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNY 133
           D  A A KPKP PIGPKRG+KVKILRRESYW+K+VGSVV VDQDP TRYPVVVRF KVNY
Sbjct: 71  DG-ATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNY 130

Query: 134 ASVSTNNYALDEIEEVA 144
           A++STNNYALDE+EEVA
Sbjct: 131 ANISTNNYALDEVEEVA 142

[Close]

BLAST of Csor.00g272150 vs. TAIR 10
Match: AT2G20260.1 (photosystem I subunit E-2 )

HSP 1 Score: 131.0 bits (328), Expect = 7.9e-31
Identity = 82/137 (59.85%), Postives = 96/137 (70.07%), Query Frame = 0


Query: 15  IPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAAT-------AD 74
           +P++    SS   + V+F P  S       RLVVRAA D     PPA A++       A 
Sbjct: 16  VPAAIGGGSSKSTTIVSFLPMRSF----GSRLVVRAAED----TPPATASSDSSSTTAAA 75

Query: 75  APAEAP--KPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVN 134
           APA+ P  K KP PIGPKRG+KVKILR+ESYWYK+VGSVV VDQDP TRYPVVVRF KVN
Sbjct: 76  APAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVN 135

Query: 135 YASVSTNNYALDEIEEV 143
           YA++STNNYALDE+EEV
Sbjct: 136 YANISTNNYALDEVEEV 144

The following BLAST results are available for this feature:

BLAST of Csor.00g272150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41229	3.7e-33	60.00	Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestri...	[more]
Q41228	4.8e-33	63.01	Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestri...	[more]
Q9S831	3.1e-32	63.50	Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thalian...	[more]
P12354	2.6e-31	64.57	Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9S714	1.1e-29	59.85	Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Csor.00g272150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937722.1	3.34e-88	100.00	photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata...	[more]
XP_023536804.1	7.87e-87	98.60	photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022965997.1	1.12e-86	98.60	photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima]	[more]
XP_022144405.1	1.35e-73	87.41	photosystem I reaction center subunit IV, chloroplastic-like [Momordica charanti...	[more]
XP_008441802.1	3.21e-73	88.19	PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis...	[more]

BLAST of Csor.00g272150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FC09	1.62e-88	100.00	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A6J1HLT8	5.41e-87	98.60	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A6J1CRI6	6.53e-74	87.41	photosystem I reaction center subunit IV, chloroplastic-like OS=Momordica charan...	[more]
A0A1S3B3T3	1.55e-73	88.19	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=...	[more]
A0A0A0LJQ1	4.56e-68	86.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1	[more]

BLAST of Csor.00g272150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28750.1	2.2e-33	63.50	Photosystem I reaction centre subunit IV / PsaE protein	[more]
AT2G20260.1	7.9e-31	59.85	photosystem I subunit E-2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PFAM	PF02427	PSI_PsaE	coord: 83..142 e-value: 5.0E-30 score: 103.0
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PANTHER	PTHR34549	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATED	coord: 1..143
None	No IPR available	GENE3D	2.30.30.50		coord: 76..143 e-value: 4.1E-36 score: 124.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..85
None	No IPR available	PANTHER	PTHR34549:SF7	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A	coord: 1..143
IPR008990	Electron transport accessory-like domain superfamily	SUPERFAMILY	50090	Electron transport accessory proteins	coord: 82..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g272150.m01	Csor.00g272150.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I