Csor.00g272110 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g272110
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionVinorine synthase-like
LocationCsor_Chr12: 13861793 .. 13862174 (-)
RNA-Seq ExpressionCsor.00g272110
SyntenyCsor.00g272110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCCTCTGTAAGTACTTTCCGCCATTTCTTCGTTTTTCTCTGCCGATCTCTGTTTGTTGATTTTAGTTACGTTTGTTTTGTTTTTGAAGGATTATTTTGGCAGAAACAGTGGCCAAATCCACGTTCAGCACCACCAAATCCCGGCGTTTAGCGACTGGGATAAGGCCAGGGATTTGCCGATTAATCAATATTTCGAAACTGCTCGTCAGGCTGGTTTGATTCACTACAGTTCCTCTTCCGGCGAAACCGGTCCCTGCCTTCCTTCTTCCGATTTGTACTCCGTCGATCGCAAAAATCCTCCGCCCTCAGCCGCCGCACGCAAGGTCTCCATCTCCGTCTCTATCTCTATCTCTTCATTAATCGAAATTTCTGGTTGA

mRNA sequence

ATGGAATCCTCTGATTATTTTGGCAGAAACAGTGGCCAAATCCACGTTCAGCACCACCAAATCCCGGCGTTTAGCGACTGGGATAAGGCCAGGGATTTGCCGATTAATCAATATTTCGAAACTGCTCGTCAGGCTGGTTTGATTCACTACAGTTCCTCTTCCGGCGAAACCGGTCCCTGCCTTCCTTCTTCCGATTTGTACTCCGTCGATCGCAAAAATCCTCCGCCCTCAGCCGCCGCACGCAAGGTCTCCATCTCCGTCTCTATCTCTATCTCTTCATTAATCGAAATTTCTGGTTGA

Coding sequence (CDS)

ATGGAATCCTCTGATTATTTTGGCAGAAACAGTGGCCAAATCCACGTTCAGCACCACCAAATCCCGGCGTTTAGCGACTGGGATAAGGCCAGGGATTTGCCGATTAATCAATATTTCGAAACTGCTCGTCAGGCTGGTTTGATTCACTACAGTTCCTCTTCCGGCGAAACCGGTCCCTGCCTTCCTTCTTCCGATTTGTACTCCGTCGATCGCAAAAATCCTCCGCCCTCAGCCGCCGCACGCAAGGTCTCCATCTCCGTCTCTATCTCTATCTCTTCATTAATCGAAATTTCTGGTTGA

Protein sequence

MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPCLPSSDLYSVDRKNPPPSAAARKVSISVSISISSLIEISG
Homology
[Close]
BLAST of Csor.00g272110 vs. NCBI nr
Match: KAG6586178.1 (hypothetical protein SDJN03_18911, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (501), Expect = 1.56e-63
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60
          MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC
Sbjct: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60

Query: 61 LPSSDLYSVDRKNPPPSAAARKVSISVSISISSLIEISG 99
          LPSSDLYSVDRKNPPPSAAARKVSISVSISISSLIEISG
Sbjct: 61 LPSSDLYSVDRKNPPPSAAARKVSISVSISISSLIEISG 99

[Close]
BLAST of Csor.00g272110 vs. NCBI nr
Match: XP_022937721.1 (uncharacterized protein LOC111444037 [Cucurbita moschata])

HSP 1 Score: 173 bits (439), Expect = 5.46e-53
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0 

Query: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60
          MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC
Sbjct: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60

Query: 61 LPSSDLYSVDRKNPPPSAAARKVSI 85
          LPSSDLYSVDRKNPPPSAAARK  +
Sbjct: 61 LPSSDLYSVDRKNPPPSAAARKARV 85

[Close]
BLAST of Csor.00g272110 vs. NCBI nr
Match: KAG7021009.1 (hypothetical protein SDJN02_17697 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167 bits (423), Expect = 1.08e-50
Identity = 79/85 (92.94%), Postives = 80/85 (94.12%), Query Frame = 0 

Query: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60
          MESSDYFGRNSGQIHVQHHQIPAF DWDKARDLPI QYFETARQAGLIHYSSSSGETGPC
Sbjct: 1  MESSDYFGRNSGQIHVQHHQIPAFGDWDKARDLPITQYFETARQAGLIHYSSSSGETGPC 60

Query: 61 LPSSDLYSVDRKNPPPSAAARKVSI 85
          LPSSDLYSVDRK PPPSAAARK  +
Sbjct: 61 LPSSDLYSVDRKKPPPSAAARKARV 85

[Close]
BLAST of Csor.00g272110 vs. NCBI nr
Match: XP_023538023.1 (uncharacterized protein LOC111798907 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163 bits (413), Expect = 4.90e-49
Identity = 77/85 (90.59%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60
          MESSDYFGRNSG IH  HHQIPAF DWDKARDLPI QYFETARQAGLIHYSSSSGETGPC
Sbjct: 1  MESSDYFGRNSGHIHFPHHQIPAFGDWDKARDLPITQYFETARQAGLIHYSSSSGETGPC 60

Query: 61 LPSSDLYSVDRKNPPPSAAARKVSI 85
          LPSSDLYSVDRKNPPPSAAARK  +
Sbjct: 61 LPSSDLYSVDRKNPPPSAAARKARV 85

[Close]
BLAST of Csor.00g272110 vs. NCBI nr
Match: XP_022965976.1 (uncharacterized protein LOC111465695 [Cucurbita maxima])

HSP 1 Score: 157 bits (398), Expect = 9.33e-47
Identity = 76/85 (89.41%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60
          MESSDY  RNSGQIHVQHHQIPAF DWDKARDLPI QYFETARQAGLIHYSSSSGETGPC
Sbjct: 1  MESSDYLCRNSGQIHVQHHQIPAFGDWDKARDLPITQYFETARQAGLIHYSSSSGETGPC 60

Query: 61 LPSSDLYSVDRKNPPPSAAARKVSI 85
          LPSSDLYSVDRK PP SAAARK  +
Sbjct: 61 LPSSDLYSVDRKKPPLSAAARKARV 85

[Close]
BLAST of Csor.00g272110 vs. ExPASy TrEMBL
Match: A0A6J1FB62 (uncharacterized protein LOC111444037 OS=Cucurbita moschata OX=3662 GN=LOC111444037 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 2.64e-53
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0 

Query: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60
          MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC
Sbjct: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60

Query: 61 LPSSDLYSVDRKNPPPSAAARKVSI 85
          LPSSDLYSVDRKNPPPSAAARK  +
Sbjct: 61 LPSSDLYSVDRKNPPPSAAARKARV 85

[Close]
BLAST of Csor.00g272110 vs. ExPASy TrEMBL
Match: A0A6J1HN41 (uncharacterized protein LOC111465695 OS=Cucurbita maxima OX=3661 GN=LOC111465695 PE=4 SV=1)

HSP 1 Score: 157 bits (398), Expect = 4.52e-47
Identity = 76/85 (89.41%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60
          MESSDY  RNSGQIHVQHHQIPAF DWDKARDLPI QYFETARQAGLIHYSSSSGETGPC
Sbjct: 1  MESSDYLCRNSGQIHVQHHQIPAFGDWDKARDLPITQYFETARQAGLIHYSSSSGETGPC 60

Query: 61 LPSSDLYSVDRKNPPPSAAARKVSI 85
          LPSSDLYSVDRK PP SAAARK  +
Sbjct: 61 LPSSDLYSVDRKKPPLSAAARKARV 85

[Close]
BLAST of Csor.00g272110 vs. ExPASy TrEMBL
Match: A0A0A0LKP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G082200 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 2.46e-36
Identity = 61/76 (80.26%), Postives = 64/76 (84.21%), Query Frame = 0 

Query: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60
          ME S Y  RNSGQIH+QHHQIPAF DWDKA+DLPI QYFETARQAGLI YSSSSGE+GPC
Sbjct: 1  MEVSIYSNRNSGQIHLQHHQIPAFGDWDKAKDLPITQYFETARQAGLIRYSSSSGESGPC 60

Query: 61 LPSSDLYSVDRKNPPP 76
           P SDLYS DR  PPP
Sbjct: 61 PPPSDLYSADRMKPPP 76

[Close]
BLAST of Csor.00g272110 vs. ExPASy TrEMBL
Match: A0A5D3DXR6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00480 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 6.61e-36
Identity = 61/76 (80.26%), Postives = 64/76 (84.21%), Query Frame = 0 

Query: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60
          ME S Y  RNSGQIH+QHHQIPAF DWDKA+DLPI QYFETARQAGLI YSSSSGE+GPC
Sbjct: 1  MEVSIYSNRNSGQIHLQHHQIPAFGDWDKAKDLPITQYFETARQAGLIRYSSSSGESGPC 60

Query: 61 LPSSDLYSVDRKNPPP 76
          LP SDLYS DR  P P
Sbjct: 61 LPPSDLYSADRMKPLP 76

[Close]
BLAST of Csor.00g272110 vs. ExPASy TrEMBL
Match: A0A1S3B517 (uncharacterized protein LOC103485859 OS=Cucumis melo OX=3656 GN=LOC103485859 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 6.99e-36
Identity = 61/76 (80.26%), Postives = 64/76 (84.21%), Query Frame = 0 

Query: 1  MESSDYFGRNSGQIHVQHHQIPAFSDWDKARDLPINQYFETARQAGLIHYSSSSGETGPC 60
          ME S Y  RNSGQIH+QHHQIPAF DWDKA+DLPI QYFETARQAGLI YSSSSGE+GPC
Sbjct: 1  MEVSIYSNRNSGQIHLQHHQIPAFGDWDKAKDLPITQYFETARQAGLIRYSSSSGESGPC 60

Query: 61 LPSSDLYSVDRKNPPP 76
          LP SDLYS DR  P P
Sbjct: 61 LPPSDLYSADRMKPLP 76

[Close]
BLAST of Csor.00g272110 vs. TAIR 10
Match: AT5G18310.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 6.1e-06
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 20 QIPAFSDWDKARDLPINQYFETARQAGLI--HYSSSSGETGPCLPSS 65
          QIP F +W++A ++PI QYFE  RQAGLI   Y+++S  +     SS
Sbjct: 15 QIPRFGEWEEANEMPITQYFENPRQAGLIRHQYTTTSSASSTTTSSS 61

[Close]
BLAST of Csor.00g272110 vs. TAIR 10
Match: AT5G18310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 3.3e-04
Identity = 16/33 (48.48%), Postives = 23/33 (69.70%), Query Frame = 0 

Query: 20 QIPAFSDWDKARDLPINQYFETARQAGLIHYSS 53
          QIP F +W++A ++PI QYFE  RQA  +  +S
Sbjct: 15 QIPRFGEWEEANEMPITQYFENPRQAEALKLAS 47

The following BLAST results are available for this feature:
BLAST of Csor.00g272110 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g272110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6586178.11.56e-63100.00hypothetical protein SDJN03_18911, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022937721.15.46e-5396.47uncharacterized protein LOC111444037 [Cucurbita moschata][more]
KAG7021009.11.08e-5092.94hypothetical protein SDJN02_17697 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023538023.14.90e-4990.59uncharacterized protein LOC111798907 [Cucurbita pepo subsp. pepo][more]
XP_022965976.19.33e-4789.41uncharacterized protein LOC111465695 [Cucurbita maxima][more]
BLAST of Csor.00g272110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FB622.64e-5396.47uncharacterized protein LOC111444037 OS=Cucurbita moschata OX=3662 GN=LOC1114440... [more]
A0A6J1HN414.52e-4789.41uncharacterized protein LOC111465695 OS=Cucurbita maxima OX=3661 GN=LOC111465695... [more]
A0A0A0LKP32.46e-3680.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G082200 PE=4 SV=1[more]
A0A5D3DXR66.61e-3680.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B5176.99e-3680.26uncharacterized protein LOC103485859 OS=Cucumis melo OX=3656 GN=LOC103485859 PE=... [more]
BLAST of Csor.00g272110 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G18310.26.1e-0646.81unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G18310.13.3e-0448.48unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g272110.m01Csor.00g272110.m01mRNA