Csor.00g271430 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g271430
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Csor_Chr12: 14417244 .. 14420140 (-)
RNA-Seq Expression	Csor.00g271430
Synteny	Csor.00g271430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCACCAGCTCAAGTAAGTTGGATGTTCTTCGCGTAATTTCGTATTACTTTTTTGTTCTTGCTGTTTTTCTATAATGAATTTCTATAAACGAACGGAATTTTCTTTATGCAAGTAATAATAGTTTGAATTAAGTTTTGTTCGTTAGCTCATGTTGCGAATTTGGTGATTTTCTTGTTGGATAAGGTCGAAAGATCAGTTTCCTACAATGAACATACGTCGAGGAGGCCGCCGCCGGAGTTGCCGTCTCTATTACTTCATGGAAGAATCATTTACATCGGAATGCCTGTAAGTGCTTGAATTAGTGTTTGTCCAGTGCTATACGATTTAACTCGTTACTCGATGAACTATTCAACGAATAGAAAGGGAGAATTTACGACTGTTTTTTTCAACAACGTGTTGTCGAGCAGTTTCATAAGAAGAAAAAATCAAAAGAAGAAGCATGTTCTTCGAACTTATAAAAAATAGAAAGGTGCATCTCATGATAATCACATATTTTCGACCTCTGGAGACGTACAGAGTGATGAAAATTCTAGTTCAGGAATGAGTGAGTCATGCTGTTTTAGGAACCTTGTTTGTTGAACTGAAAGTATCAATTGGAGTACTTTGATATCGTGATCACCTTAGAATAGATTTTGTGAGTACATTCAAGTGCTGAATTTGAAGTTCGGCAGTAATTCTTGAAATTCTTGGCAAGTTCTCAATTTATTTTAACTGATTTTCATTTGTTTCCTCTCGACTTGCATAAGCTTTACTGAAATAGACATTCACTGTGTTAAGTGTTTTTAGGTTTTTTTAAAAATTAATTTCGAGGCATAATCGATTTTGAATGTTTAAGAATCGATTGTGCATTCATTTTGAGATAGTTTTTTGTTGGATGATGAAAGTCCCCATCGGCTAATTTAGGGAATGATCATGGGTTTATAAACAAAGAATACTCTCTCCATTGGTATGAGGCCTTTTGGGGAAGCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTAGACAATATCATACCGTTGTGGAGAGTCGTGTTCATCTAACATGGTATCAGAGCCATGCCCTAAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAAATGTCGAACAAAGGACTCCAAAATGAAAAAGGAGTTAAGCCTCCTCGAAGGCGGTAAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTCGATTAAGGGGAGGTGTGGTTTGTTCGAGGGGAGGTGTGGTTTGTTCGAGGGGAGGTGTCGGATGATGAAAGTCCCAATCGGGTGATTTAGGGAATGATCATGGGTTTATAAACAAAGAATACGCTCTCCATTGGTATGAGGCATTTTGGGGAAGCCCAAAGCAAAACTATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTTGTGTTCATCTAACATTTTTGACTTCCATCTTATAGAAGAAGTTTTCTGCTTCACGCAAGCATGTCATATGGTTACTTACCTAAAACGTCTTCATTCAATTATTTCTGCTCTCAGTTTGTTCCAGCTGTCACAGAGCTAGTTATTGCTGAACTGATGTACCTGCAATGGATGGATCCAAGAGAACCAGTATATCTTTATATAAACTCCACAGGAACAACTCGAGATGCTGACGAAACTGTAAGCTTTTAATTTATTCAGCTACCTGAAACAAGTGAAATTAAGTTGTGAAGGGCATGCATTTCTTTCCTCATGCTTTATAATATCATCTGCCTACATTTTTAGGTTTTGTATTCAGACTATAAATCTGCCTCGTTTATCTACGTGTTGACATGAATATCAACTTGTTTGTCTTGATCTGGAGTTCCTTTGTTTGAGATGTTACAGGACTCATTTTCTAATTTGTTCATCATTAATAATTAAGAAAAACAATTAAAATGAGATTGTAATTTTTAGATTTTTTCTTCCAAAAGTATGTTTAATTGTAATTACTAAGAGCAGCTTCTTGATCCACAATCTGTGAAATTGGGCTGGGTTTGATGCTGCTCGTGACGTTCTTATTCGTGCAAAAGAGGTCAAGATCCTTCTATAGCCTGGTAATTTATTTTGAAGTAGAACTCAGTTTCTTTGACTCTGATTTTTGCTGGTGTTGAGGATTGTTCGGTGGGAGTCCCACATTGGCTAATTTAGGGAATGATCATGGGTTTATAAGTGAGAAATACATCTTCATTGGTATGAGACCTTTTGGGGAAGCCCAAAGCAAAGTCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGATTCGTGATTCCTAACATGGTATCAGAGCCATGTCCTTAACTTAGCCATGTCAATAGAATTCTCAAATATCAAATAAAGAAATTGCTAGCCTCGAAAGTGGAGTCAAAAGTGACTCAAGTGTCGAACAAAGGGTGTACTTTGTTCGAGGGCTCTATAGTGTACTTTGTTCGAGGGGAGGATTGTTGAGAGAGAGTCCCACATTAACTAATTTAGGAAAGTGTCAAACAAAGGATGTACTTTGTTCGAGGGCTCTATAGTATAGTGTACTTTGTTTGAGAGGAGGATTGTTGAGAGAGAGTCCCACATTGACTAATTTAGGAAATAATCATGGGTTTATAAGTGAGGAATACATCTTCATTGGTATGAGGCCTTTTGGAGAAGCCCAAAGCAAGGCTATTAGAAACCACGGACCCCCACAATGGTATGATATTATACACGGACCCCCACAATTTATTCCTTACTTATAAATCCATGATCGTCCTCTTAATTAGCCAATGTGGTATTCCCTCCCAGCAATCCTCAACATAGGCAACGTTTATTTCTACTCTTTTTTTGAACTCACATGTCCCGACGTACCATATAATTCATAATACAACTTCAATATTTTGTCAGTAA

mRNA sequence

ATGGCTGCACCAGCTCAAGTCGAAAGATCAGTTTCCTACAATGAACATACGTCGAGGAGGCCGCCGCCGGAGTTGCCGTCTCTATTACTTCATGGAAGAATCATTTACATCGGAATGCCTTTTGTTCCAGCTGTCACAGAGCTAGTTATTGCTGAACTGATGTACCTGCAATGGATGGATCCAAGAGAACCAGTATATCTTTATATAAACTCCACAGGAACAACTCGAGATGCTGACGAAACTAGGTCAAGATCCTTCTATAGCCTGTAA

Coding sequence (CDS)

ATGGCTGCACCAGCTCAAGTCGAAAGATCAGTTTCCTACAATGAACATACGTCGAGGAGGCCGCCGCCGGAGTTGCCGTCTCTATTACTTCATGGAAGAATCATTTACATCGGAATGCCTTTTGTTCCAGCTGTCACAGAGCTAGTTATTGCTGAACTGATGTACCTGCAATGGATGGATCCAAGAGAACCAGTATATCTTTATATAAACTCCACAGGAACAACTCGAGATGCTGACGAAACTAGGTCAAGATCCTTCTATAGCCTGTAA

Protein sequence

MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPVYLYINSTGTTRDADETRSRSFYSL

Homology

[Close]

BLAST of Csor.00g271430 vs. ExPASy Swiss-Prot
Match: Q8L770 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-32
Identity = 63/81 (77.78%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD 60
           M++PAQVERSV+YNEH  R PPP+LPS+LL GRI+YIGMP VPAVTELV+AELMYLQW+D
Sbjct: 98  MSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLD 157

Query: 61  PREPVYLYINSTGTTRDADET 82
           P+EP+Y+YINSTGTTRD  ET
Sbjct: 158 PKEPIYIYINSTGTTRDDGET 178

[Close]

BLAST of Csor.00g271430 vs. ExPASy Swiss-Prot
Match: Q8LB10 (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 20  RPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPVYLYINSTGTTRDAD 79
           +PPP+L S L   RI+Y+GM  VP+VTEL++AE +YLQ+ D  +P+YLYINSTGTT++ +
Sbjct: 101 QPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGE 160

Query: 80  E 81
           +
Sbjct: 161 K 161

[Close]

BLAST of Csor.00g271430 vs. ExPASy Swiss-Prot
Match: Q9XJ35 (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-14
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 19  RRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPVYLYINSTGTTRDA 78
           R  PP+LPSLLL  RI Y+GMP VPAVTEL++A+ M+L + +P +P+YLYINS GT  + 
Sbjct: 166 RTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEK 225

Query: 79  DET 82
            ET
Sbjct: 226 MET 228

[Close]

BLAST of Csor.00g271430 vs. ExPASy Swiss-Prot
Match: Q9L4P4 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpR PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-13
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1  MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPA----------VTELVI 60
          M    Q  ++  Y + + R PPP+LPSLLL  RIIY+GMP   +          VTEL+I
Sbjct: 1  MLESIQAVQAPYYGDVSYRTPPPDLPSLLLKERIIYLGMPLFSSDDVKRQVGFDVTELII 60

Query: 61 AELMYLQWMDPREPVYLYINSTGTT 76
          A+L+YL++ +P +P+Y YINSTGT+
Sbjct: 61 AQLLYLEFDNPEKPIYFYINSTGTS 85

[Close]

BLAST of Csor.00g271430 vs. ExPASy Swiss-Prot
Match: P74466 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=clpR PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-12
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 9  RSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPA----------VTELVIAELMYLQW 68
          +S  Y +   + PPP+L SLLL  RI+Y+GMP   +          VT+L+IA+L+YLQ+
Sbjct: 7  QSSYYGDMAFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQF 66

Query: 69 MDPREPVYLYINSTGTT 76
           DP +P+Y YINSTGT+
Sbjct: 67 DDPDKPIYFYINSTGTS 83

[Close]

BLAST of Csor.00g271430 vs. NCBI nr
Match: KAG6586246.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181 bits (458), Expect = 2.75e-57
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD 60
          MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD
Sbjct: 1  MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD 60

Query: 61 PREPVYLYINSTGTTRDADETRSRSFYSL 89
          PREPVYLYINSTGTTRDADETRSRSFYSL
Sbjct: 61 PREPVYLYINSTGTTRDADETRSRSFYSL 89

[Close]

BLAST of Csor.00g271430 vs. NCBI nr
Match: KAG7021082.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166 bits (419), Expect = 2.78e-51
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD 60
          MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD
Sbjct: 1  MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD 60

Query: 61 PREPVYLYINSTGTTRDADET 81
          PREPVYLYINSTGTTRDADET
Sbjct: 61 PREPVYLYINSTGTTRDADET 81

[Close]

BLAST of Csor.00g271430 vs. NCBI nr
Match: XP_022937541.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 155 bits (391), Expect = 6.84e-47
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 6  QVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPV 65
          +VERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREP+
Sbjct: 15 RVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPI 74

Query: 66 YLYINSTGTTRDADET 81
          YLYINSTGTTRDADET
Sbjct: 75 YLYINSTGTTRDADET 90

[Close]

BLAST of Csor.00g271430 vs. NCBI nr
Match: XP_022966028.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 147 bits (371), Expect = 7.67e-44
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 6  QVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPV 65
          +VERSVSY+EHTSRRPPPELPSLLLHGRIIYIGMPFVPAV ELVIAELMYLQWMDP+EP+
Sbjct: 15 RVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVRELVIAELMYLQWMDPKEPI 74

Query: 66 YLYINSTGTTRDADET 81
          YLYINSTGTTRD DET
Sbjct: 75 YLYINSTGTTRDDDET 90

[Close]

BLAST of Csor.00g271430 vs. NCBI nr
Match: XP_022870360.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like [Olea europaea var. sylvestris])

HSP 1 Score: 149 bits (376), Expect = 2.19e-43
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1   MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD 60
           MA PAQVERSVSYNEH  RRPPP+LPSLLLHGRI+YIGMP VPAVTELV+AELMYLQWMD
Sbjct: 87  MATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMD 146

Query: 61  PREPVYLYINSTGTTRDADET 81
           P+EP+YLYINSTGTTRD  ET
Sbjct: 147 PKEPIYLYINSTGTTRDDGET 167

[Close]

BLAST of Csor.00g271430 vs. ExPASy TrEMBL
Match: A0A6J1FAM0 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443918 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 3.31e-47
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 6  QVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPV 65
          +VERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREP+
Sbjct: 15 RVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPI 74

Query: 66 YLYINSTGTTRDADET 81
          YLYINSTGTTRDADET
Sbjct: 75 YLYINSTGTTRDADET 90

[Close]

BLAST of Csor.00g271430 vs. ExPASy TrEMBL
Match: A0A6J1HQN5 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465735 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 3.72e-44
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 6  QVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPV 65
          +VERSVSY+EHTSRRPPPELPSLLLHGRIIYIGMPFVPAV ELVIAELMYLQWMDP+EP+
Sbjct: 15 RVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVRELVIAELMYLQWMDPKEPI 74

Query: 66 YLYINSTGTTRDADET 81
          YLYINSTGTTRD DET
Sbjct: 75 YLYINSTGTTRDDDET 90

[Close]

BLAST of Csor.00g271430 vs. ExPASy TrEMBL
Match: A0A5D3CQV3 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00520 PE=3 SV=1)

HSP 1 Score: 149 bits (377), Expect = 1.87e-42
Identity = 69/81 (85.19%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1   MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD 60
           MAAPAQVERSVSYNEH  RRPPP+LPSLLLHGRI+YIGMP VPAVTEL++AELMYLQWMD
Sbjct: 98  MAAPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELIVAELMYLQWMD 157

Query: 61  PREPVYLYINSTGTTRDADET 81
           P+EP+Y+YINSTGTTRD  ET
Sbjct: 158 PKEPIYIYINSTGTTRDDGET 178

[Close]

BLAST of Csor.00g271430 vs. ExPASy TrEMBL
Match: A0A6I9TUM4 (ATP-dependent Clp protease proteolytic subunit OS=Sesamum indicum OX=4182 GN=LOC105168917 PE=3 SV=1)

HSP 1 Score: 149 bits (377), Expect = 2.11e-42
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1   MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD 60
           MA PAQVERSVSYNEH  RRPPP+LPSLLLHGRI+YIGMP VPAVTELVIAELMYLQWMD
Sbjct: 85  MATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMD 144

Query: 61  PREPVYLYINSTGTTRDADET 81
           P+EP+YLYINSTGTTRD  ET
Sbjct: 145 PKEPIYLYINSTGTTRDDGET 165

[Close]

BLAST of Csor.00g271430 vs. ExPASy TrEMBL
Match: A0A5B6YQP2 (ATP-dependent Clp protease proteolytic subunit OS=Davidia involucrata OX=16924 GN=Din_003555 PE=3 SV=1)

HSP 1 Score: 149 bits (377), Expect = 2.32e-42
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1   MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD 60
           MA PAQVERSVSYNEH  RRPPP+LPSLLLHGRI+YIGMP VPAVTELVIAELMYLQWMD
Sbjct: 89  MATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMD 148

Query: 61  PREPVYLYINSTGTTRDADET 81
           P+EP+YLYINSTGTTRD  ET
Sbjct: 149 PKEPIYLYINSTGTTRDDGET 169

[Close]

BLAST of Csor.00g271430 vs. TAIR 10
Match: AT1G09130.1 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-33
Identity = 63/81 (77.78%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD 60
           M++PAQVERSV+YNEH  R PPP+LPS+LL GRI+YIGMP VPAVTELV+AELMYLQW+D
Sbjct: 98  MSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLD 157

Query: 61  PREPVYLYINSTGTTRDADET 82
           P+EP+Y+YINSTGTTRD  ET
Sbjct: 158 PKEPIYIYINSTGTTRDDGET 178

[Close]

BLAST of Csor.00g271430 vs. TAIR 10
Match: AT1G09130.2 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-33
Identity = 63/81 (77.78%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD 60
           M++PAQVERSV+YNEH  R PPP+LPS+LL GRI+YIGMP VPAVTELV+AELMYLQW+D
Sbjct: 98  MSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLD 157

Query: 61  PREPVYLYINSTGTTRDADET 82
           P+EP+Y+YINSTGTTRD  ET
Sbjct: 158 PKEPIYIYINSTGTTRDDGET 178

[Close]

BLAST of Csor.00g271430 vs. TAIR 10
Match: AT1G09130.3 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-33
Identity = 63/81 (77.78%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMD 60
           M++PAQVERSV+YNEH  R PPP+LPS+LL GRI+YIGMP VPAVTELV+AELMYLQW+D
Sbjct: 98  MSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLD 157

Query: 61  PREPVYLYINSTGTTRDADET 82
           P+EP+Y+YINSTGTTRD  ET
Sbjct: 158 PKEPIYIYINSTGTTRDDGET 178

[Close]

BLAST of Csor.00g271430 vs. TAIR 10
Match: AT4G17040.1 (CLP protease R subunit 4 )

HSP 1 Score: 80.5 bits (197), Expect = 7.6e-16
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 20  RPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPVYLYINSTGTTRDAD 79
           +PPP+L S L   RI+Y+GM  VP+VTEL++AE +YLQ+ D  +P+YLYINSTGTT++ +
Sbjct: 101 QPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGE 160

Query: 80  E 81
           +
Sbjct: 161 K 161

[Close]

BLAST of Csor.00g271430 vs. TAIR 10
Match: AT1G49970.1 (CLP protease proteolytic subunit 1 )

HSP 1 Score: 80.1 bits (196), Expect = 9.9e-16
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 19  RRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPVYLYINSTGTTRDA 78
           R  PP+LPSLLL  RI Y+GMP VPAVTEL++A+ M+L + +P +P+YLYINS GT  + 
Sbjct: 166 RTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEK 225

Query: 79  DET 82
            ET
Sbjct: 226 MET 228

The following BLAST results are available for this feature:

BLAST of Csor.00g271430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L770	1.9e-32	77.78	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]
Q8LB10	1.1e-14	55.74	ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ...	[more]
Q9XJ35	1.4e-14	58.73	ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic ...	[more]
Q9L4P4	3.4e-13	45.88	Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus el...	[more]
P74466	3.8e-12	46.75	Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp...	[more]

BLAST of Csor.00g271430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586246.1	2.75e-57	100.00	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic,...	[more]
KAG7021082.1	2.78e-51	100.00	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic,...	[more]
XP_022937541.1	6.84e-47	97.37	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-...	[more]
XP_022966028.1	7.67e-44	92.11	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-...	[more]
XP_022870360.1	2.19e-43	86.42	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-...	[more]

BLAST of Csor.00g271430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAM0	3.31e-47	97.37	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-...	[more]
A0A6J1HQN5	3.72e-44	92.11	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-...	[more]
A0A5D3CQV3	1.87e-42	85.19	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6I9TUM4	2.11e-42	87.65	ATP-dependent Clp protease proteolytic subunit OS=Sesamum indicum OX=4182 GN=LOC...	[more]
A0A5B6YQP2	2.32e-42	87.65	ATP-dependent Clp protease proteolytic subunit OS=Davidia involucrata OX=16924 G...	[more]

BLAST of Csor.00g271430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09130.1	1.4e-33	77.78	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT1G09130.2	1.4e-33	77.78	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT1G09130.3	1.4e-33	77.78	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT4G17040.1	7.6e-16	55.74	CLP protease R subunit 4	[more]
AT1G49970.1	9.9e-16	58.73	CLP protease proteolytic subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.226.10		coord: 8..83 e-value: 2.8E-13 score: 51.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR10381:SF6	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 3, CHLOROPLASTIC	coord: 1..79
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 27..73 e-value: 3.5E-7 score: 30.3
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 1..79
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 20..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g271430.m01	Csor.00g271430.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009368	endopeptidase Clp complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009526	plastid envelope
molecular_function	GO:0051117	ATPase binding
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0004252	serine-type endopeptidase activity