Csor.00g270720 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g270720
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	histone H1-like
Location	Csor_Chr12: 14979272 .. 14980142 (+)
RNA-Seq Expression	Csor.00g270720
Synteny	Csor.00g270720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTGCCGCCGATCCCGTTGTCTCCTCCGTCGCGCCTGCTGCCGCTGTGGTGGTGGAGAACAATTCGAAGTCGAAGAAAACTGCAGCCTCTAAAGATTCGAAGGCTAAGAAATCATCTGGTGCGAAGAAGACCAAATCTTCGCCGACTCATCCTCCTTTCTTTCAGGTATTTGTAATTTGTCTATATTCTGATCAGTAATGCTCGTTTGCTTTTGAATAATTTGTTCTGATCGGATTCTGAAATTGTTCTGTAGATGATTAGCGAAGCGATCGTATCGCTGAAGGAGAGGACAGGCTCGAGTCAGTACGCCATTACTAAGTTCAGCGAAGAGAAGCACAAGGTATTGCCATCGAATTTCAGGAAGCTTTTGCTTGTTCATTTGAAGAAGCTTGTTGCCGCTGATAAACTCGTTAAGGTCAAGAACTCCTACAAGCTTCCATCGGCGCGCTCTGTCCAGCAGAAATCTTCATCCGCGCCTGTCGTCGCTAAGAAAACAACGATCTCAAAGCTCAAGGCAGCCGCGAGTGTGAAGAAGGCGGCCGCTGTTGCTAAACCGAAGGCGAAAACTGCTGTGAAACCTAAGCCAAATGTCGTGGTGAAGCCGAAGACGATCGCAAAATCCAAGGTCGTCCAGAAGCCAAAGGCCGCCGCTGTGGCCAAGCCTAAGGCGGCGGAGAAGGTTAAGAAGGTCGCTCCAAAGCCGAAACCTAAATCAAAGCCTTCTAAAGTAGCCAAAACGTTGTCGCGAACATCGCCAGGAAAGAGAGTCGCACCAGCGGCGAAGTCGAAGAAGGTAGCGGCGAAGAAGTCAAAGACAGTAAAGTCGCCGACGAGGAAATTGCTGGCCAGAAAAGTGAAGAAATGA

mRNA sequence

ATGGCTTCTGCCGCCGATCCCGTTGTCTCCTCCGTCGCGCCTGCTGCCGCTGTGGTGGTGGAGAACAATTCGAAGTCGAAGAAAACTGCAGCCTCTAAAGATTCGAAGGCTAAGAAATCATCTGGTGCGAAGAAGACCAAATCTTCGCCGACTCATCCTCCTTTCTTTCAGATGATTAGCGAAGCGATCGTATCGCTGAAGGAGAGGACAGGCTCGAGTCAGTACGCCATTACTAAGTTCAGCGAAGAGAAGCACAAGGTCAAGAACTCCTACAAGCTTCCATCGGCGCGCTCTGTCCAGCAGAAATCTTCATCCGCGCCTGTCGTCGCTAAGAAAACAACGATCTCAAAGCTCAAGGCAGCCGCGAGTGTGAAGAAGGCGGCCGCTGTTGCTAAACCGAAGGCGAAAACTGCTGTGAAACCTAAGCCAAATGTCGTGGTGAAGCCGAAGACGATCGCAAAATCCAAGGTCGTCCAGAAGCCAAAGGCCGCCGCTGTGGCCAAGCCTAAGGCGGCGGAGAAGGTTAAGAAGGTCGCTCCAAAGCCGAAACCTAAATCAAAGCCTTCTAAAGTAGCCAAAACGTTGTCGCGAACATCGCCAGGAAAGAGAGTCGCACCAGCGGCGAAGTCGAAGAAGGTAGCGGCGAAGAAGTCAAAGACAGTAAAGTCGCCGACGAGGAAATTGCTGGCCAGAAAAGTGAAGAAATGA

Coding sequence (CDS)

ATGGCTTCTGCCGCCGATCCCGTTGTCTCCTCCGTCGCGCCTGCTGCCGCTGTGGTGGTGGAGAACAATTCGAAGTCGAAGAAAACTGCAGCCTCTAAAGATTCGAAGGCTAAGAAATCATCTGGTGCGAAGAAGACCAAATCTTCGCCGACTCATCCTCCTTTCTTTCAGATGATTAGCGAAGCGATCGTATCGCTGAAGGAGAGGACAGGCTCGAGTCAGTACGCCATTACTAAGTTCAGCGAAGAGAAGCACAAGGTCAAGAACTCCTACAAGCTTCCATCGGCGCGCTCTGTCCAGCAGAAATCTTCATCCGCGCCTGTCGTCGCTAAGAAAACAACGATCTCAAAGCTCAAGGCAGCCGCGAGTGTGAAGAAGGCGGCCGCTGTTGCTAAACCGAAGGCGAAAACTGCTGTGAAACCTAAGCCAAATGTCGTGGTGAAGCCGAAGACGATCGCAAAATCCAAGGTCGTCCAGAAGCCAAAGGCCGCCGCTGTGGCCAAGCCTAAGGCGGCGGAGAAGGTTAAGAAGGTCGCTCCAAAGCCGAAACCTAAATCAAAGCCTTCTAAAGTAGCCAAAACGTTGTCGCGAACATCGCCAGGAAAGAGAGTCGCACCAGCGGCGAAGTCGAAGAAGGTAGCGGCGAAGAAGTCAAAGACAGTAAAGTCGCCGACGAGGAAATTGCTGGCCAGAAAAGTGAAGAAATGA

Protein sequence

MASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMISEAIVSLKERTGSSQYAITKFSEEKHKVKNSYKLPSARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVAAKKSKTVKSPTRKLLARKVKK

Homology

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BLAST of Csor.00g270720 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-23
Identity = 119/276 (43.12%), Postives = 146/276 (52.90%), Query Frame = 0


Query: 8   VVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMISEAIVSLK 67
           VV   A    V  E N  +K   A K++KAKK +  +K  ++PTHPP+F+MI +AIV+LK
Sbjct: 12  VVEEQAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLK 71

Query: 68  ERTGSSQYAITKFSEEKH-------------------------KVKNSYKLPSA---RSV 127
           ERTGSSQ+AITKF EEK                          KVKNSYKLPS     + 
Sbjct: 72  ERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYKLPSGSKPAAA 131

Query: 128 QQKSSSAPVVAKKTTISKLKAAASVK-------KAAAVAKP--KAKTAVKPKPNVVVKPK 187
              +   P  AK    +K KAA   K       K AA AKP  KAK A K KP    KP 
Sbjct: 132 AVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPA 191

Query: 188 TIAKSKVVQKPKAAAVAKPKAAEKVK------KVAPKP--KPKSKPSKVAKTLSRTSPGK 236
             AK     KPKAAA AKPKAA K K      K A KP  K K+  +KVAKT +RT+P +
Sbjct: 192 AKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTTTAKVAKTATRTTPSR 251

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BLAST of Csor.00g270720 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-22
Identity = 112/266 (42.11%), Postives = 140/266 (52.63%), Query Frame = 0


Query: 2   ASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAK-KSSGAKKTKSSPTHPPFFQMIS 61
           + AAD  V S     A       KSKKT  +K +K   K++   K K++ +HP + +MI 
Sbjct: 14  SGAADTTVKSPEKKPAA---KGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIK 73

Query: 62  EAIVSLKERTGSSQYAITKFSEEKH-------------------------KVKNSYKLPS 121
           +AIV+LKERTGSSQYAI KF EEKH                         KVK S+K+PS
Sbjct: 74  DAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPS 133

Query: 122 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKS 181
           ARS      +APV  K T ++K K   +   A A AK  AK   KP   VV K K  AK 
Sbjct: 134 ARSAATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKP 193

Query: 182 K---VVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKK 236
           K      KPK+ +VA   A  K K VA KPK K +P+K ++T +RTSPGK+VA  AK   
Sbjct: 194 KAKVTAAKPKSKSVA---AVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVA 253

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BLAST of Csor.00g270720 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 111/252 (44.05%), Postives = 126/252 (50.00%), Query Frame = 0


Query: 5   ADPVVSSVAPAAAVVVENNSK--SKKTAASKDSKAKKSSGAKKTKSSPT--HPPFFQMIS 64
           AD  VS  AP    V E  SK  +K  A     + KK   AKK KS  T  HP FF+MIS
Sbjct: 2   ADTPVS--APVVPEVTERKSKRGTKAAAVKVPKEKKKVIAAKKPKSKGTSSHPSFFEMIS 61

Query: 65  EAIVSLKERTGSSQYAITKFSEEKH-------------------------KVKNSYKLPS 124
           +AI +LKERTGSSQYAI KF E+KH                         KVKNS+KLPS
Sbjct: 62  DAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPS 121

Query: 125 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKS 184
           AR     ++ AP +AKK TI K K AA  K A   AKPKAK  V  K       KT+AK 
Sbjct: 122 AR-----AAPAPALAKKPTIPKPKVAAKPKTAKIGAKPKAKAKVAAKTKATT--KTVAKK 181

Query: 185 KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVAA 228
               KPKA    KPK               +KP+KVAKT +  SPGK+       K V  
Sbjct: 182 IPAAKPKAKTAGKPKTV------------AAKPAKVAKTAAVASPGKK-------KAVPV 225

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BLAST of Csor.00g270720 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 6.5e-19
Identity = 109/262 (41.60%), Postives = 127/262 (48.47%), Query Frame = 0


Query: 5   ADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMISEAIV 64
           A P   + APAA     N +K+KK              A K ++SPTH P+ +M+SEAI 
Sbjct: 15  AAPEAPADAPAAPAADANAAKAKKAT------------APKKRASPTHLPYAEMVSEAIT 74

Query: 65  SLKERTGSSQYAITKFSEEKH--------------------------KVKNSYKLPSARS 124
           SLKERTGSS YAI KF E+KH                          KVKNSYKL SA  
Sbjct: 75  SLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSATK 134

Query: 125 VQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKSKVV 184
              K  +AP           K     KK  A AKPKAKT  K KP    KPK  AK K V
Sbjct: 135 PNPKPKAAP----------KKPKTGAKKPKAAAKPKAKTPAKAKP--ATKPKPAAKPKAV 194

Query: 185 QKPKAAA--VAKPKAAEKVKKVAPKPKPKSKP---SKVAKTLSRTSPGKRVAPAAKSKKV 236
            KPK  A   AKP A  K K    KPKP +K    +K AKT ++ +PGK+ APA K    
Sbjct: 195 VKPKTPAKPKAKPAAKAKPKTAGAKPKPLAKKAGRAKAAKTSAKDTPGKK-APAKK---- 246

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BLAST of Csor.00g270720 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.5e-19
Identity = 107/236 (45.34%), Postives = 144/236 (61.02%), Query Frame = 0


Query: 21  ENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMISEAIVSLKERTGSSQYAITKF 80
           E  ++ +KT  +K SK KK+S   K ++  +HP + +MI +AIVSLKE+ GSSQYAI KF
Sbjct: 34  EPKAEVEKTKKAKGSKPKKAS---KPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKF 93

Query: 81  SEEKHK-VKNSYKLPSARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKT-- 140
            EEK K +  ++K    +++++  +S  ++  K +  KL AAA   K  AVAKPKAKT  
Sbjct: 94  IEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSF-KLSAAA---KKPAVAKPKAKTAA 153

Query: 141 ---------AVKPKPNVVVKPKTIAKSK-VVQKPKAAAVAKPK-AAEKVKKVAPKP---- 200
                    A KPK   VVKPK  +K+K V  KPK AA AKPK  A K K  A KP    
Sbjct: 154 KAKSVKAKPAAKPKAKAVVKPKVASKAKAVAAKPKKAA-AKPKTVAAKTKPTAAKPKAVV 213

Query: 201 KPKS--KPSKVAKTLSRTSPGKRVAP----AAKSKKVAAKKSKTVKSPTRKLLARK 233
           KPKS  KP+KVAKT  +T+PGK+VA     AAK   V + K+K+VKSP +K+  ++
Sbjct: 214 KPKSKVKPAKVAKTSVKTTPGKKVAAVKKVAAKKVPVKSVKAKSVKSPVKKVSVKR 261

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BLAST of Csor.00g270720 vs. NCBI nr
Match: KAG6586317.1 (hypothetical protein SDJN03_19050, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 383 bits (983), Expect = 1.34e-132
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS 60
           MASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS
Sbjct: 1   MASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS 60

Query: 61  EAIVSLKERTGSSQYAITKFSEEKHKVKNSYKLPSARSVQQKSSSAPVVAKKTTISKLKA 120
           EAIVSLKERTGSSQYAITKFSEEKHKVKNSYKLPSARSVQQKSSSAPVVAKKTTISKLKA
Sbjct: 61  EAIVSLKERTGSSQYAITKFSEEKHKVKNSYKLPSARSVQQKSSSAPVVAKKTTISKLKA 120

Query: 121 AASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKSKVVQKPKAAAVAKPKAAEKVKKVAP 180
           AASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKSKVVQKPKAAAVAKPKAAEKVKKVAP
Sbjct: 121 AASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKSKVVQKPKAAAVAKPKAAEKVKKVAP 180

Query: 181 KPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVAAKKSKTVKSPTRKLLARKVKK 235
           KPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVAAKKSKTVKSPTRKLLARKVKK
Sbjct: 181 KPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVAAKKSKTVKSPTRKLLARKVKK 235

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BLAST of Csor.00g270720 vs. NCBI nr
Match: KAG7021165.1 (Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367 bits (943), Expect = 3.99e-126
Identity = 234/260 (90.00%), Postives = 234/260 (90.00%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS 60
           MASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS
Sbjct: 1   MASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS 60

Query: 61  EAIVSLKERTGSSQYAITKFSEEKHKV-------------------------KNSYKLPS 120
           EAIVSLKERTGSSQYAITKFSEEKHKV                         KNSYKLPS
Sbjct: 61  EAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPS 120

Query: 121 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKS 180
           ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKS
Sbjct: 121 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKS 180

Query: 181 KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVAA 235
           KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKT SRTSPGKRVAPAAKSKKVAA
Sbjct: 181 KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTFSRTSPGKRVAPAAKSKKVAA 240

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BLAST of Csor.00g270720 vs. NCBI nr
Match: XP_022938185.1 (histone H1-like [Cucurbita moschata])

HSP 1 Score: 357 bits (917), Expect = 3.62e-122
Identity = 228/260 (87.69%), Postives = 229/260 (88.08%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS 60
           MASAADPVVSSVAPAAAV VENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS
Sbjct: 1   MASAADPVVSSVAPAAAVAVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS 60

Query: 61  EAIVSLKERTGSSQYAITKFSEEKHKV-------------------------KNSYKLPS 120
           EAIVSLKERTGSSQYAITKFSEEKHKV                         KNSYKLPS
Sbjct: 61  EAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPS 120

Query: 121 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKS 180
           ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPN VVKPKT+AKS
Sbjct: 121 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNAVVKPKTVAKS 180

Query: 181 KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVAA 235
           KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSK SKVAKTLSRTSPGKRVAPA K KKVA 
Sbjct: 181 KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKASKVAKTLSRTSPGKRVAPATKPKKVAV 240

[Close]

BLAST of Csor.00g270720 vs. NCBI nr
Match: XP_023538032.1 (histone H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351 bits (900), Expect = 1.45e-119
Identity = 228/261 (87.36%), Postives = 228/261 (87.36%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVVVENNSKSKKTAASKD-SKAKKSSGAKKTKSSPTHPPFFQMI 60
           MASAADPVVSSVAPAAAV VENNSKSKK AASKD SKAKKSSGAKKTKSSPTHPPFFQMI
Sbjct: 1   MASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMI 60

Query: 61  SEAIVSLKERTGSSQYAITKFSEEKHKV-------------------------KNSYKLP 120
           SEAIVSLKERTGSSQYAITKFSEEKHKV                         KNSYKLP
Sbjct: 61  SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP 120

Query: 121 SARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAK 180
           SARSVQ KSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPN VVKPKTIAK
Sbjct: 121 SARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAK 180

Query: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVA 235
           SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPA K KKVA
Sbjct: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA 240

[Close]

BLAST of Csor.00g270720 vs. NCBI nr
Match: XP_022965890.1 (histone H1-like [Cucurbita maxima])

HSP 1 Score: 348 bits (892), Expect = 2.31e-118
Identity = 223/260 (85.77%), Postives = 226/260 (86.92%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS 60
           MASAADPVV S APAAAV VENN+KSKKT ASKDSKAKK SGAKKTKSSPTHPPFF+MIS
Sbjct: 1   MASAADPVVPSDAPAAAVAVENNAKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRMIS 60

Query: 61  EAIVSLKERTGSSQYAITKFSEEKHK-------------------------VKNSYKLPS 120
           EAIVSLKERTGSSQYAITKFSEEKHK                         VKNSYKLPS
Sbjct: 61  EAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKLPS 120

Query: 121 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKS 180
           ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPN VVKPKT+AKS
Sbjct: 121 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVAKS 180

Query: 181 KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVAA 235
           KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPA K KKVA 
Sbjct: 181 KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVAV 240

[Close]

BLAST of Csor.00g270720 vs. ExPASy TrEMBL
Match: A0A6J1FIZ7 (histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111444347 PE=3 SV=1)

HSP 1 Score: 357 bits (917), Expect = 1.75e-122
Identity = 228/260 (87.69%), Postives = 229/260 (88.08%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS 60
           MASAADPVVSSVAPAAAV VENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS
Sbjct: 1   MASAADPVVSSVAPAAAVAVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS 60

Query: 61  EAIVSLKERTGSSQYAITKFSEEKHKV-------------------------KNSYKLPS 120
           EAIVSLKERTGSSQYAITKFSEEKHKV                         KNSYKLPS
Sbjct: 61  EAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPS 120

Query: 121 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKS 180
           ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPN VVKPKT+AKS
Sbjct: 121 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNAVVKPKTVAKS 180

Query: 181 KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVAA 235
           KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSK SKVAKTLSRTSPGKRVAPA K KKVA 
Sbjct: 181 KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKASKVAKTLSRTSPGKRVAPATKPKKVAV 240

[Close]

BLAST of Csor.00g270720 vs. ExPASy TrEMBL
Match: A0A6J1HQ08 (histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111465639 PE=3 SV=1)

HSP 1 Score: 348 bits (892), Expect = 1.12e-118
Identity = 223/260 (85.77%), Postives = 226/260 (86.92%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFFQMIS 60
           MASAADPVV S APAAAV VENN+KSKKT ASKDSKAKK SGAKKTKSSPTHPPFF+MIS
Sbjct: 1   MASAADPVVPSDAPAAAVAVENNAKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRMIS 60

Query: 61  EAIVSLKERTGSSQYAITKFSEEKHK-------------------------VKNSYKLPS 120
           EAIVSLKERTGSSQYAITKFSEEKHK                         VKNSYKLPS
Sbjct: 61  EAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKLPS 120

Query: 121 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKS 180
           ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPN VVKPKT+AKS
Sbjct: 121 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVAKS 180

Query: 181 KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVAA 235
           KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPA K KKVA 
Sbjct: 181 KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVAV 240

[Close]

BLAST of Csor.00g270720 vs. ExPASy TrEMBL
Match: A0A6J1KEC3 (histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1)

HSP 1 Score: 277 bits (709), Expect = 7.39e-91
Identity = 192/264 (72.73%), Postives = 205/264 (77.65%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVVV----ENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFF 60
           M+SAADPV SS APA   VV    EN+SKSKK AASK SKAKK SGAK+T+SSPTHPPFF
Sbjct: 1   MSSAADPVASSDAPATVAVVAPPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHK-------------------------VKNSY 120
           +MISEAIVSLKERTGSSQYAITKFSEEKHK                         VKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKT 180
           KLPSARS   K+++APVVAKK   SKLKAA SVKKAA VAKPKAKTAVKPKP VV KPK 
Sbjct: 121 KLPSARS---KAAAAPVVAKKPASSKLKAAVSVKKAA-VAKPKAKTAVKPKPKVVAKPKA 180

Query: 181 IAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSK 235
            AKSKVV KPKA A AK KAAEKVKKVAPKPKP +KP+KVAKTLSR SPGK+ APAAK+K
Sbjct: 181 AAKSKVVGKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRASPGKKAAPAAKAK 240

[Close]

BLAST of Csor.00g270720 vs. ExPASy TrEMBL
Match: A0A6J1G2W2 (histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1)

HSP 1 Score: 277 bits (709), Expect = 7.39e-91
Identity = 194/264 (73.48%), Postives = 208/264 (78.79%), Query Frame = 0


Query: 1   MASAADPVVSSVAPA--AAVV--VENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFF 60
           M+SAADPV SS APA  AAV   VEN+SKSKK AASK SKAKK SGAK+T+SSPTHPPFF
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHK-------------------------VKNSY 120
           +MISEAIVSLKERTGSSQYAITKFSEEKHK                         VKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKT 180
           KLPSARS   K+++APVVAKK   SKLKAA SVKKAA VAKPKAKTAVKPKP  V KPK+
Sbjct: 121 KLPSARS---KAAAAPVVAKKPASSKLKAAVSVKKAA-VAKPKAKTAVKPKPKAVAKPKS 180

Query: 181 IAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSK 235
            AKSKVV KPKA A AK KAAEKVKKVAPKPKP +KP+KVAKTLSRTSPGK+ APAAK+K
Sbjct: 181 AAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAK 240

[Close]

BLAST of Csor.00g270720 vs. ExPASy TrEMBL
Match: A0A6J1CNP7 (histone H1-like OS=Momordica charantia OX=3673 GN=LOC111012938 PE=3 SV=1)

HSP 1 Score: 265 bits (677), Expect = 5.87e-86
Identity = 186/265 (70.19%), Postives = 203/265 (76.60%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAA----AVVVENNSKSKKTAASKDSKAKKSSGAKKTKSSPTHPPFF 60
           MASAADP+V S APAA     + V N++K KK A+SK SKAKK SGAK+ KSSPTHPPFF
Sbjct: 1   MASAADPIVPSDAPAADAAEVLTVANDAKPKKAASSKASKAKKPSGAKRPKSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHK-------------------------VKNSY 120
           QMISEAIVSLKERTGSSQYAITKFSEEKHK                         VKNSY
Sbjct: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKT 180
           KLPSARS+Q K++ APV AKK   SKLKAAASVKK AAV KPKAKTAVKPKP  VVKPKT
Sbjct: 121 KLPSARSIQAKAA-APVAAKKPASSKLKAAASVKKKAAVVKPKAKTAVKPKPKAVVKPKT 180

Query: 181 IAKSKVVQKPKAAAVA-KPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKS 235
           I+KSKVV KPKAAA A KPKAA KVK  A K KP ++P+KVAKTL++TSPGKR APAAK+
Sbjct: 181 ISKSKVVAKPKAAAAAAKPKAAAKVK-AAAKAKPAARPAKVAKTLTQTSPGKRAAPAAKA 240

[Close]

BLAST of Csor.00g270720 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 108.2 bits (269), Expect = 9.0e-24
Identity = 112/266 (42.11%), Postives = 140/266 (52.63%), Query Frame = 0


Query: 2   ASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAK-KSSGAKKTKSSPTHPPFFQMIS 61
           + AAD  V S     A       KSKKT  +K +K   K++   K K++ +HP + +MI 
Sbjct: 14  SGAADTTVKSPEKKPAA---KGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIK 73

Query: 62  EAIVSLKERTGSSQYAITKFSEEKH-------------------------KVKNSYKLPS 121
           +AIV+LKERTGSSQYAI KF EEKH                         KVK S+K+PS
Sbjct: 74  DAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPS 133

Query: 122 ARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKS 181
           ARS      +APV  K T ++K K   +   A A AK  AK   KP   VV K K  AK 
Sbjct: 134 ARSAATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKP 193

Query: 182 K---VVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKK 236
           K      KPK+ +VA   A  K K VA KPK K +P+K ++T +RTSPGK+VA  AK   
Sbjct: 194 KAKVTAAKPKSKSVA---AVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVA 253

[Close]

BLAST of Csor.00g270720 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-16
Identity = 111/270 (41.11%), Postives = 141/270 (52.22%), Query Frame = 0


Query: 3   SAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAKKS-SGAKKTKSSPTHPPFFQMISE 62
           +AAD  V+     AAV  +  +K +KT   K+ K KK+ + A K ++  +HP + +MI +
Sbjct: 16  TAADAPVTD----AAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKD 75

Query: 63  AIVSLKERTGSSQYAITKFSEEKH-------------------------KVKNSYKLPSA 122
           AIV+LKERTGSSQYAI KF EEK                          KVK S+KLPSA
Sbjct: 76  AIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSA 135

Query: 123 RSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKSK 182
            +   K+SS    A+K+  +K K A     A   AK K   A K K  + VKPKT A  K
Sbjct: 136 SA---KASSPKAAAEKSAPAKKKPAT---VAVTKAKRKVAAASKAKKTIAVKPKTAAAKK 195

Query: 183 VVQKPKAAAVAK-PKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPG-------KRVAPAA 236
           V  K KA  V +   AA K K V  KPK K++P+K AKT   TSP        K+VA  A
Sbjct: 196 VTAKAKAKPVPRATAAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVA 255

[Close]

BLAST of Csor.00g270720 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-11
Identity = 89/242 (36.78%), Postives = 113/242 (46.69%), Query Frame = 0


Query: 2   ASAADPVVSSVAPAAAVVVENNSKSKKTAASKDSKAK-KSSGAKKTKSSPTHPPFFQMIS 61
           + AAD  V S     A       KSKKT  +K +K   K++   K K++ +HP + +MI 
Sbjct: 14  SGAADTTVKSPEKKPAA---KGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIK 73

Query: 62  EAIVSLKERTGSSQYAITKFSEEKHKVKNSYKLPSARSVQQKSSSAPVVAKKTTISKLKA 121
           +AIV+LKERTGSSQYAI KF EEKHK                  S P   +K  +  LK 
Sbjct: 74  DAIVTLKERTGSSQYAIQKFIEEKHK------------------SLPPTFRKLLLVNLKR 133

Query: 122 AAS----VKKAAAVAKPKAKTAVKPKPNVVVKPKTIAKSKVVQKPKAAAVAKPKAAEKVK 181
             +    VK  A+   P A++A  PKP   V            K KA  VAKPKA     
Sbjct: 134 LVASEKLVKVKASFKIPSARSAATPKPAAPV------------KKKATVVAKPKA----- 193

Query: 182 KVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVAAK---KSKTVKSPTRKLLARKV 236
                          ++T +RTSPGK+VA  AK   V  K   KS  VKSP ++   RK 
Sbjct: 194 ---------------SRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVKSPAKRASTRKA 202

The following BLAST results are available for this feature:

BLAST of Csor.00g270720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P37218	3.3e-23	43.12	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
P26569	1.3e-22	42.11	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
Q9M5W4	1.5e-20	44.05	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
P23444	6.5e-19	41.60	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
P08283	8.5e-19	45.34	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of Csor.00g270720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586317.1	1.34e-132	100.00	hypothetical protein SDJN03_19050, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7021165.1	3.99e-126	90.00	Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022938185.1	3.62e-122	87.69	histone H1-like [Cucurbita moschata]	[more]
XP_023538032.1	1.45e-119	87.36	histone H1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022965890.1	2.31e-118	85.77	histone H1-like [Cucurbita maxima]	[more]

BLAST of Csor.00g270720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIZ7	1.75e-122	87.69	histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111444347 PE=3 SV=1	[more]
A0A6J1HQ08	1.12e-118	85.77	histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111465639 PE=3 SV=1	[more]
A0A6J1KEC3	7.39e-91	72.73	histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1	[more]
A0A6J1G2W2	7.39e-91	73.48	histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1	[more]
A0A6J1CNP7	5.87e-86	70.19	histone H1-like OS=Momordica charantia OX=3673 GN=LOC111012938 PE=3 SV=1	[more]

BLAST of Csor.00g270720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30620.1	9.0e-24	42.11	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	1.1e-16	41.11	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	3.9e-11	36.78	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 65..82 score: 38.89 coord: 144..158 score: 31.85 coord: 199..218 score: 31.67 coord: 38..59 score: 35.86 coord: 177..194 score: 35.8
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 49..136 e-value: 5.0E-6 score: 36.0
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 52..90 e-value: 3.8E-10 score: 39.9
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 51..128 score: 15.559305
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 44..129 e-value: 9.9E-10 score: 40.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..56
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 102..235
None	No IPR available	PANTHER	PTHR11467:SF128	SUBFAMILY NOT NAMED	coord: 102..235
None	No IPR available	PANTHER	PTHR11467:SF128	SUBFAMILY NOT NAMED	coord: 7..87
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 7..87
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 47..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g270720.m01	Csor.00g270720.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008168	methyltransferase activity