Csor.00g270350 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g270350
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr12: 15253948 .. 15254274 (-)
RNA-Seq Expression	Csor.00g270350
Synteny	Csor.00g270350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGACGGCGTCCTCCGCCCCGTCTACGAGGCTTGCATCGCCGGCTGTGATTCCGAAATCCACCGTCGTCCCTACCATCGCAACTGCGGCTGCGCTCTCCACGAATCCCGCCGTCAACTTTCTCACTGCTACCATTCCAAGTACAAATCCGTCTCCTATCCCATTCGCCGATCCTGGAGCGAAGGTTCCTTGACGCTCGCCTTCGCCTCTCCTTCCTCTTCCCCTTCCTCCTCCCCTGTCGTCGGTAAGTTCTCACAGCCTGGTGCCGCTTTGAGCGACGACGACGACGACGACGCTCCTGTTCAGTTTAACAGGAGTTGA

mRNA sequence

ATGGCCGCCGACGGCGTCCTCCGCCCCGTCTACGAGGCTTGCATCGCCGGCTGTGATTCCGAAATCCACCGTCGTCCCTACCATCGCAACTGCGGCTGCGCTCTCCACGAATCCCGCCGTCAACTTTCTCACTGCTACCATTCCAAGTACAAATCCGTCTCCTATCCCATTCGCCGATCCTGGAGCGAAGGTTCCTTGACGCTCGCCTTCGCCTCTCCTTCCTCTTCCCCTTCCTCCTCCCCTGTCGTCGGTAAGTTCTCACAGCCTGGTGCCGCTTTGAGCGACGACGACGACGACGACGCTCCTGTTCAGTTTAACAGGAGTTGA

Coding sequence (CDS)

ATGGCCGCCGACGGCGTCCTCCGCCCCGTCTACGAGGCTTGCATCGCCGGCTGTGATTCCGAAATCCACCGTCGTCCCTACCATCGCAACTGCGGCTGCGCTCTCCACGAATCCCGCCGTCAACTTTCTCACTGCTACCATTCCAAGTACAAATCCGTCTCCTATCCCATTCGCCGATCCTGGAGCGAAGGTTCCTTGACGCTCGCCTTCGCCTCTCCTTCCTCTTCCCCTTCCTCCTCCCCTGTCGTCGGTAAGTTCTCACAGCCTGGTGCCGCTTTGAGCGACGACGACGACGACGACGCTCCTGTTCAGTTTAACAGGAGTTGA

Protein sequence

MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS

Homology

[Close]

BLAST of Csor.00g270350 vs. NCBI nr
Match: KAG6586353.1 (hypothetical protein SDJN03_19086, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219 bits (558), Expect = 6.08e-72
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60
           MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60

Query: 61  WSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS 108
           WSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS
Sbjct: 61  WSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS 108

[Close]

BLAST of Csor.00g270350 vs. NCBI nr
Match: KAG7021199.1 (hypothetical protein SDJN02_17887, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217 bits (553), Expect = 3.52e-71
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60
           MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60

Query: 61  WSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS 108
           WSEG LTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS
Sbjct: 61  WSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS 108

[Close]

BLAST of Csor.00g270350 vs. NCBI nr
Match: XP_022938303.1 (uncharacterized protein LOC111444438 [Cucurbita moschata])

HSP 1 Score: 214 bits (545), Expect = 5.85e-70
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60
           MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60

Query: 61  WSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS 108
           WSEG LTLAFASPSSSPSSSPVVGK SQPGAALSDDDDDDAPVQFNRS
Sbjct: 61  WSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDDAPVQFNRS 108

[Close]

BLAST of Csor.00g270350 vs. NCBI nr
Match: XP_023536961.1 (uncharacterized protein LOC111798188 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207 bits (526), Expect = 4.78e-67
Identity = 104/109 (95.41%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60
           MAADGVLRPVYEACIAGCDSE+HRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEVHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60

Query: 61  WSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDD-APVQFNRS 108
           WSEG LTLAFASPSSSPSSSPVVGK SQPGAALSDDDDDD APVQF RS
Sbjct: 61  WSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDDDAPVQFTRS 109

[Close]

BLAST of Csor.00g270350 vs. NCBI nr
Match: XP_022965412.1 (uncharacterized protein LOC111465326 [Cucurbita maxima])

HSP 1 Score: 189 bits (481), Expect = 2.89e-60
Identity = 98/108 (90.74%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60
           MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSV YPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVCYPIRRS 60

Query: 61  WSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS 108
           WSEG LTLA ASPSSSP    VVGK SQPGAALSDDDDD APVQF RS
Sbjct: 61  WSEGCLTLALASPSSSP----VVGKSSQPGAALSDDDDD-APVQFTRS 103

[Close]

BLAST of Csor.00g270350 vs. ExPASy TrEMBL
Match: A0A6J1FII0 (uncharacterized protein LOC111444438 OS=Cucurbita moschata OX=3662 GN=LOC111444438 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 2.83e-70
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60
           MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60

Query: 61  WSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS 108
           WSEG LTLAFASPSSSPSSSPVVGK SQPGAALSDDDDDDAPVQFNRS
Sbjct: 61  WSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDDAPVQFNRS 108

[Close]

BLAST of Csor.00g270350 vs. ExPASy TrEMBL
Match: A0A6J1HKA0 (uncharacterized protein LOC111465326 OS=Cucurbita maxima OX=3661 GN=LOC111465326 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 1.40e-60
Identity = 98/108 (90.74%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60
           MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSV YPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVCYPIRRS 60

Query: 61  WSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS 108
           WSEG LTLA ASPSSSP    VVGK SQPGAALSDDDDD APVQF RS
Sbjct: 61  WSEGCLTLALASPSSSP----VVGKSSQPGAALSDDDDD-APVQFTRS 103

[Close]

BLAST of Csor.00g270350 vs. ExPASy TrEMBL
Match: A0A1S4E0F4 (uncharacterized protein LOC103499614 OS=Cucumis melo OX=3656 GN=LOC103499614 PE=4 SV=1)

HSP 1 Score: 179 bits (454), Expect = 2.22e-56
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60
           MAADG+LRPVYEACIAGCDSEIHRRPYHRNC CALH+SRRQ  HC HSK KS+SYPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNR 107
           WSEG L+LA AS SSSPS+SPVVGK SQPGAALS+DDDDDAP+ F R
Sbjct: 61  WSEGCLSLALASASSSPSTSPVVGKTSQPGAALSEDDDDDAPILFAR 107

[Close]

BLAST of Csor.00g270350 vs. ExPASy TrEMBL
Match: A0A6J1KE46 (uncharacterized protein LOC111493529 OS=Cucurbita maxima OX=3661 GN=LOC111493529 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 4.17e-54
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60
           MAADG+LRPVYEACIAGCD+EI RRPYHRNCGCALH+SRRQ   C HSK KS+ YPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRS 60

Query: 61  WSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS 108
           WSEG L LA AS SSSPSSSPVVGK SQPG ALSDDDDDDAP+Q  R+
Sbjct: 61  WSEGCLALALASASSSPSSSPVVGKTSQPGVALSDDDDDDAPLQLARN 108

[Close]

BLAST of Csor.00g270350 vs. ExPASy TrEMBL
Match: A0A0A0LI78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009330 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 9.82e-53
Identity = 85/107 (79.44%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60
           MAADG+LRP+YEACI GCDSEIHRRPYHRNCGCALH+S RQ  HC HSK KS+SYPIRRS
Sbjct: 1   MAADGLLRPIYEACI-GCDSEIHRRPYHRNCGCALHKSSRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGSLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNR 107
           WSEG L+L  AS SSSPSSSPVVGK SQPGA LS+DDDDD+P+ F R
Sbjct: 61  WSEGCLSLVLASASSSPSSSPVVGKTSQPGAPLSEDDDDDSPILFAR 106

[Close]

BLAST of Csor.00g270350 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-17
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 4   DGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRR---QLSHCYHSKYKSVSYPIRRS 63
           DG+ R ++E CI+ CDS I RRPYH+NCGCALHE  R     + C H + + V +PI+RS
Sbjct: 7   DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 64  WSEG-SLTLAFASPSSSP-----SSSPVVGKFSQPGAALSDDD 98
           WSEG SL L  AS SSS      SSS  +   +   + +SD D
Sbjct: 67  WSEGNSLALHLASSSSSSNLQSLSSSSSISTLASLSSTVSDID 109

[Close]

BLAST of Csor.00g270350 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.1 bits (209), Expect = 3.7e-17
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHE----------SRRQLSHCYHSKY 60
          MAADG+ R ++E CI+G DS I RRPYH+NCGCALH+           RR  S   H   
Sbjct: 1  MAADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSS 60

Query: 61 KSVSYPIRRSWSEGSLTLAFASPSSSPSSS 81
          +S+S+PIRRSWSEG++       SSS SS+
Sbjct: 61 ESISFPIRRSWSEGNIMAMNLFSSSSSSSN 90

The following BLAST results are available for this feature:

BLAST of Csor.00g270350 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g270350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586353.1	6.08e-72	100.00	hypothetical protein SDJN03_19086, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7021199.1	3.52e-71	99.07	hypothetical protein SDJN02_17887, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022938303.1	5.85e-70	98.15	uncharacterized protein LOC111444438 [Cucurbita moschata]	[more]
XP_023536961.1	4.78e-67	95.41	uncharacterized protein LOC111798188 [Cucurbita pepo subsp. pepo]	[more]
XP_022965412.1	2.89e-60	90.74	uncharacterized protein LOC111465326 [Cucurbita maxima]	[more]

BLAST of Csor.00g270350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FII0	2.83e-70	98.15	uncharacterized protein LOC111444438 OS=Cucurbita moschata OX=3662 GN=LOC1114444...	[more]
A0A6J1HKA0	1.40e-60	90.74	uncharacterized protein LOC111465326 OS=Cucurbita maxima OX=3661 GN=LOC111465326...	[more]
A0A1S4E0F4	2.22e-56	83.18	uncharacterized protein LOC103499614 OS=Cucumis melo OX=3656 GN=LOC103499614 PE=...	[more]
A0A6J1KE46	4.17e-54	80.56	uncharacterized protein LOC111493529 OS=Cucurbita maxima OX=3661 GN=LOC111493529...	[more]
A0A0A0LI78	9.82e-53	79.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009330 PE=4 SV=1	[more]

BLAST of Csor.00g270350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35110.1	2.2e-17	47.57	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G46490.1	3.7e-17	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..108
None	No IPR available	PANTHER	PTHR35121	HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATED	coord: 2..83
None	No IPR available	PANTHER	PTHR35121:SF2	BNAC04G52100D PROTEIN	coord: 2..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g270350.m01	Csor.00g270350.m01	mRNA