Csor.00g269860 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g269860
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Dynein light chain
Location	Csor_Chr12: 15586526 .. 15587169 (+)
RNA-Seq Expression	Csor.00g269860
Synteny	Csor.00g269860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGAGATGGAGCTTGTAACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGCATCAGTTTACAAGTATAACTGGTTGGGTAGGAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGAGCGAAGGGCGGTGGGGACGGTGACGGAAGCGGGGGAACGGAGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAAATGATGCAAATTCAGGCGTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGGTAATGTATCGACAAACTTTTTTTTTTTCTTTTTTAGCTTCGCGAATCGTTAACGAATTTCAAATTTTTGAAAAATTAAAGAACTGGGTCTCGTAACACGAACGAATGTTATTGAAATCAAACAATTTTCAAACGGGCATAGTTTTTTTTCTTTTCGAGAATGAAAATTGTAGCAAAGAAATCAGAAAAAATCGAAATCGGAGCATTTGGAGACATAA

mRNA sequence

ATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGAGATGGAGCTTGTAACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGCATCAGTTTACAAGTATAACTGGTTGGGTAGGAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGAGCGAAGGGCGGTGGGGACGGTGACGGAAGCGGGGGAACGGAGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAAATGATGCAAATTCAGGCGTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGCAAAGAAATCAGAAAAAATCGAAATCGGAGCATTTGGAGACATAA

Coding sequence (CDS)

ATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGAGATGGAGCTTGTAACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGCATCAGTTTACAAGTATAACTGGTTGGGTAGGAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGAGCGAAGGGCGGTGGGGACGGTGACGGAAGCGGGGGAACGGAGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAAATGATGCAAATTCAGGCGTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGCAAAGAAATCAGAAAAAATCGAAATCGGAGCATTTGGAGACATAA

Protein sequence

MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKQRNQKKSKSEHLET

Homology

[Close]

BLAST of Csor.00g269860 vs. NCBI nr
Match: KAG6586401.1 (hypothetical protein SDJN03_19134, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300 bits (768), Expect = 2.03e-102
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG
Sbjct: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60

Query: 61  AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120
           AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC
Sbjct: 61  AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120

Query: 121 ARRSYDSLEKLSSKLMAYNLKKQRNQKKSKSEHLET 156
           ARRSYDSLEKLSSKLMAYNLKKQRNQKKSKSEHLET
Sbjct: 121 ARRSYDSLEKLSSKLMAYNLKKQRNQKKSKSEHLET 156

[Close]

BLAST of Csor.00g269860 vs. NCBI nr
Match: KAG7021256.1 (hypothetical protein SDJN02_17944, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277 bits (708), Expect = 1.01e-92
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG
Sbjct: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60

Query: 61  AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120
           AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC
Sbjct: 61  AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120

Query: 121 ARRSYDSLEKLSSKLMAYNLKKQ 143
           ARRSYDSLEKLSSKLMAYNLKK+
Sbjct: 121 ARRSYDSLEKLSSKLMAYNLKKE 143

[Close]

BLAST of Csor.00g269860 vs. NCBI nr
Match: XP_022938230.1 (uncharacterized protein LOC111444374 [Cucurbita moschata])

HSP 1 Score: 277 bits (708), Expect = 1.38e-92
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG
Sbjct: 10  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 69

Query: 61  AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120
           AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC
Sbjct: 70  AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 129

Query: 121 ARRSYDSLEKLSSKLMAYNLKKQ 143
           ARRSYDSLEKLSSKLMAYNLKK+
Sbjct: 130 ARRSYDSLEKLSSKLMAYNLKKE 152

[Close]

BLAST of Csor.00g269860 vs. NCBI nr
Match: XP_023538230.1 (uncharacterized protein LOC111799067 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262 bits (670), Expect = 6.66e-87
Identity = 138/145 (95.17%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQMKGGFKSFYKSRDGA +VQACESVSVDK SVYKYNWLGRKSKKVVHQHGGSRG
Sbjct: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60

Query: 61  AKGGGDGDGSGG--TEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120
           AKGGGDGDG GG  TEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF
Sbjct: 61  AKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120

Query: 121 RCARRSYDSLEKLSSKLMAYNLKKQ 143
           RCARRSYDSLEKLSSKLMAYNLKK+
Sbjct: 121 RCARRSYDSLEKLSSKLMAYNLKKE 145

[Close]

BLAST of Csor.00g269860 vs. NCBI nr
Match: XP_022965961.1 (uncharacterized protein LOC111465683 [Cucurbita maxima])

HSP 1 Score: 259 bits (663), Expect = 7.25e-86
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           M T+NKQMKGGFKSFYKSRDGACNVQACESVSVDKA VYKYNWLGRKSKK VHQHGG RG
Sbjct: 1   MTTVNKQMKGGFKSFYKSRDGACNVQACESVSVDKAYVYKYNWLGRKSKKAVHQHGGPRG 60

Query: 61  AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120
           AKGGG GD  GGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC
Sbjct: 61  AKGGGGGDEGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120

Query: 121 ARRSYDSLEKLSSKLMAYNLKKQ 143
           ARRSYDSLEK SSKLMAYNLKK+
Sbjct: 121 ARRSYDSLEKFSSKLMAYNLKKE 143

[Close]

BLAST of Csor.00g269860 vs. ExPASy TrEMBL
Match: A0A6J1FJ58 (uncharacterized protein LOC111444374 OS=Cucurbita moschata OX=3662 GN=LOC111444374 PE=4 SV=1)

HSP 1 Score: 277 bits (708), Expect = 6.67e-93
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG
Sbjct: 10  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 69

Query: 61  AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120
           AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC
Sbjct: 70  AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 129

Query: 121 ARRSYDSLEKLSSKLMAYNLKKQ 143
           ARRSYDSLEKLSSKLMAYNLKK+
Sbjct: 130 ARRSYDSLEKLSSKLMAYNLKKE 152

[Close]

BLAST of Csor.00g269860 vs. ExPASy TrEMBL
Match: A0A6J1HN27 (uncharacterized protein LOC111465683 OS=Cucurbita maxima OX=3661 GN=LOC111465683 PE=4 SV=1)

HSP 1 Score: 259 bits (663), Expect = 3.51e-86
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           M T+NKQMKGGFKSFYKSRDGACNVQACESVSVDKA VYKYNWLGRKSKK VHQHGG RG
Sbjct: 1   MTTVNKQMKGGFKSFYKSRDGACNVQACESVSVDKAYVYKYNWLGRKSKKAVHQHGGPRG 60

Query: 61  AKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120
           AKGGG GD  GGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC
Sbjct: 61  AKGGGGGDEGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120

Query: 121 ARRSYDSLEKLSSKLMAYNLKKQ 143
           ARRSYDSLEK SSKLMAYNLKK+
Sbjct: 121 ARRSYDSLEKFSSKLMAYNLKKE 143

[Close]

BLAST of Csor.00g269860 vs. ExPASy TrEMBL
Match: A0A0A0LKY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006120 PE=4 SV=1)

HSP 1 Score: 194 bits (492), Expect = 3.74e-60
Identity = 112/151 (74.17%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVS---VDKASVYKYNWLGRKSKKVVHQHGG 60
           MATLNKQMKG FKSFYKSRDG  NV + E +S   VDK S+YKYNWLGRKSKK   QHGG
Sbjct: 1   MATLNKQMKG-FKSFYKSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATEQHGG 60

Query: 61  SRGAKGGGDGDGSGGTE-----GRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEM 120
                 GG G G GG       GRK+VVEGRKSVSHVETNLGSVASFLQVKVLVSDMPE+
Sbjct: 61  ------GGGGGGVGGIREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEI 120

Query: 121 MQIQAFRCARRSYDSLEKLSSKLMAYNLKKQ 143
           MQIQAFR ARRSYDSLEK SSK MAYN+KK+
Sbjct: 121 MQIQAFRTARRSYDSLEKFSSKHMAYNIKKE 144

[Close]

BLAST of Csor.00g269860 vs. ExPASy TrEMBL
Match: A0A6J1CN34 (uncharacterized protein LOC111013113 OS=Momordica charantia OX=3673 GN=LOC111013113 PE=4 SV=1)

HSP 1 Score: 190 bits (482), Expect = 1.24e-58
Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQ+KG FKSFYKSRDGA +  A +   +D+  VYKYNWLGRKSKK   QHGG RG
Sbjct: 1   MATLNKQIKG-FKSFYKSRDGARDTAAFDPAPLDRVPVYKYNWLGRKSKKATDQHGGRRG 60

Query: 61  AKGGGDG-DGSGGTEGRKM-VVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120
            +GGG G DG  G  GRK+ VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPEMMQ+QAF
Sbjct: 61  MEGGGGGGDGGEGMGGRKLLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQLQAF 120

Query: 121 RCARRSYDSLEKLSSKLMAYNLKKQ 143
           R ARRSYDSLEK SSK MA+++KK+
Sbjct: 121 RSARRSYDSLEKFSSKHMAHSIKKE 144

[Close]

BLAST of Csor.00g269860 vs. ExPASy TrEMBL
Match: A0A5D3BEW1 (Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00130 PE=3 SV=1)

HSP 1 Score: 186 bits (471), Expect = 1.78e-57
Identity = 112/146 (76.71%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGAC-NVQACESVS---VDKASVYKYNWLGRKSKKVVHQHG 60
           MATLNKQMKG FKSFYKSRDG   NV + E VS   VDK S+YKYNWLGRKSKK   QH 
Sbjct: 1   MATLNKQMKG-FKSFYKSRDGGGRNVSSREPVSTSSVDKTSIYKYNWLGRKSKKATDQHS 60

Query: 61  GSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQ 120
           G  GA  GG G+   G  GRK+VVEGRKSVSHVETNLGSVASFLQVKVLVSDMPE+MQIQ
Sbjct: 61  GGGGA--GGIGEEIMG--GRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQ 120

Query: 121 AFRCARRSYDSLEKLSSKLMAYNLKK 142
           AFR ARRSYDSLEK SSK MAYN+KK
Sbjct: 121 AFRTARRSYDSLEKFSSKHMAYNIKK 141

[Close]

BLAST of Csor.00g269860 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 81  EGRKSVSHVE----TNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLM 140
           EGRKSVSHVE      + + A  L V++L +DMP  MQ  AFRCAR + DSLEK SSK M
Sbjct: 92  EGRKSVSHVERDTAARIEAAAEMLTVRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHM 151

Query: 141 AYNLKKQ 144
           A+NLKK+
Sbjct: 152 AFNLKKE 158

The following BLAST results are available for this feature:

BLAST of Csor.00g269860 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g269860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586401.1	2.03e-102	100.00	hypothetical protein SDJN03_19134, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7021256.1	1.01e-92	99.30	hypothetical protein SDJN02_17944, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022938230.1	1.38e-92	99.30	uncharacterized protein LOC111444374 [Cucurbita moschata]	[more]
XP_023538230.1	6.66e-87	95.17	uncharacterized protein LOC111799067 [Cucurbita pepo subsp. pepo]	[more]
XP_022965961.1	7.25e-86	93.01	uncharacterized protein LOC111465683 [Cucurbita maxima]	[more]

BLAST of Csor.00g269860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJ58	6.67e-93	99.30	uncharacterized protein LOC111444374 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]
A0A6J1HN27	3.51e-86	93.01	uncharacterized protein LOC111465683 OS=Cucurbita maxima OX=3661 GN=LOC111465683...	[more]
A0A0A0LKY0	3.74e-60	74.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006120 PE=4 SV=1	[more]
A0A6J1CN34	1.24e-58	73.10	uncharacterized protein LOC111013113 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5D3BEW1	1.78e-57	76.71	Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G0...	[more]

BLAST of Csor.00g269860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20110.1	1.4e-12	58.21	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 128..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..77
None	No IPR available	PANTHER	PTHR11886:SF37	DYNEIN LIGHT CHAIN-LIKE PROTEIN	coord: 73..143
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 73..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g269860.m01	Csor.00g269860.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005874	microtubule
molecular_function	GO:0005515	protein binding