Csor.00g269220 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTAAACAGGCTTTTTGGTAAACCTAAACAAGAAGCCAATGCTTTGGCTACGTTAGACAAGTTGAATGAGGTATGTTTTACTTCGATGTTTTATTGTTTTTGATATTCTTTGTATGGAAATGATCTTTTCCTTTTCTCACTTGTTCTGAACCTATTTCATCGATCTTGATGGATGCTTGGCTTCTCGATCATTCCGTTTTTTTCCTCGTCTTTTCCAAAAATTAGTGTATATGACGGCGTAGTAATTGGTTCTACTTGACGGAGTATTTGTGTTTATGACGTCGTATTAACTTGTTCTCATTGATAGAGTACTAGTGTTTATGACGTCGTAGTAATTGGTTCTCCTTGACCGAGTATTAATGTTTATAATGTGGTAGTTATTGGTTTCCAGTTGAAATTATCGTCTTATTTGGATTTTTTAACTCGTAATTTTCCAGTTGAAATGTCGTAGTTACTGCCGTTCTTTAGGTGAAATTTCGCTTATGTAAGAAAGGAAACCTGTGTACTACAATGCTGTCGTTCTTTGGAATTGCGTCTAAAATTGTGGTTGCGTAGATTTTTGTAGTACGACTAAGCTTTTCATAATTGATACCGATATTTTTGTGCACTTCATTGTCCGGCGTTGTTTGATTTAATTGCTTCCTTTTCATCGTCTGGGATTATCTGTTTAGACACTTGAAATGCTGGAGAAGAAAGAGAACGTTCTTATTAAGAAGGCTGCTGCAGAGGTTGAAAAAGCTAAAGAATTCACAAGAGTGAAGAATAAACGAGGTATGTTATGTAATTGGGTGATCTCTTCTATGGTCAAATGCTTCTTGGTATTAATTTTTATTCCTTTTTTGAGTATTTGTTCACATGTGAAGTGTGAATAAGATTTAATTAACACCCGGTTTCTCCGCTCTGGAGTGTTAATTTGATGGTACTGCCATTCTATGGTCAAATGCAAGTTGTGCTTATGTCTGTATATTGCAATGTGATACTCCGCAGAATTTATTACTGAATCCTCCATCTACTCTTTTTTGTTCATTTCCTTATTAGGAAAATCTTGTGCTTGATGAATTATTCTACACTCTACATCCTCAATTGATGAAGTAGCCTCGTGCATTTTTTGGAGGATGATTTTTCTTGTGTTTTGTTGCCAGTCTTTGTGACTGATGGTTGCAATGTATCCCAATATTTTTTGTTGTAGTTTATGATGGCCATACATTTGTAGCTTTGTTTATTTCAAATCTTCGTTTGAGCTTTCTTTCATTTTTGGAGTTTTGTGATTTTCCTTGTTCTTATCTTTATCAGTGTTTTGGATATCACTTTCAAATGGGTTTTAATTTTATATTTCATGTCTATTTTAGTCTGAGCTGCATTTTTGGAGTTTATTCTGTCTGCTTTTTTGGGCTCTATAGTTTGTTCCTTTTCATTCTTCTTGATTTATTTAATATTTTTAAAATCATTGTAATTTTTAAAATCCTTCTATCTCTATATTACCTCGTGTTCTTATTTGCCAACCCATTTGGATCGTTTTGTTTATTGGATATGAATATCAAATATTAGGATTAAATGTCTAGGATATGAAATAGTTCTGTTTATAACTCGAACATTTGTTCTTTACAAGAATTGTTGTTTATAGGTTTCCTTCCTGACAATTTAATTAGTTTAATCAATTAGTTAGATCTGAAAGAAAAAATTAATGATATTAAATTGAAAGATTCGATTCATAGTCATTAGAATTGGTTGCAGCGGCCATACAATGTTTGAAGAGGAAAAGGCTTTATGAACAGCAAGTAGAGCAACTTGGAAATTTCCAATTGCGTATCCATGATCAGGTGAGCTGGAGTCGTTATGTACTGATTAATGAGACATTTATTTCTTGTACTTTCAGTTAACTGTATTGAAATCAACCTTTTACTTTATTAACAATTTTTTTTTTAACTTTTGCAGATGATTATGTTAGAAGGCGCAAAAGCTACAACGGAGACTGTCGATGCTTTGAGAACAGGAGCATCTGCAATGAAGGCCATGCAGAAAGCAACGTATGCCTAATATTTATTTGATTTGCTTTCTTTCTGCCTAACATTCTTTTTGTCTTCACAATCGATCTTTTAGCACAACTATTAACATTACTATTGCCTAAGCCGGAAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGTACAAAATATTGCTCAACTTATTTATGCACTTCGTTCATCTAGTTATTGATGTTAAGCTAACCAATCTTGAGAAAGTTAGCCATTACCATTAAGCATTACTTGCAATGGCAACTGAAAAATGAAATAATTTGTGAAAGTTTGTTTCATGTTTTATTTCTTTAACCGAGGTTGTGAAATTTGGAACCGTACTTATTTTAAAAATGTAGGCTGATTATTTGAAACTTTCTTCTCCAGAAACATTGATGATGTGGACAAGACGATGGATGAGATCAATGAGCAGACTGAGAATATGAAACAGATACAGGAAGCGCTGTCAACTCCAATTGGTGCTGCAGCTGATTTCGATGAGGTACTTAATCTTTGGCTTGTTTCTTGGCCTTTCCTGGTATTTGCTTATGTCTCGCAATTCATCTATTAACAATGGTGGTGTAATCAGGATGAATTGGAGGCAGAACTCGAAGAGCTTGAAAGTGCTGAGTTGGAAGAACAACTTCTCCAGCCAGCCTCAACGGCTCCTGCTGGACCTGTCTCAGTCCTGTCAGGCCGAGTTCCTGCTCGCCCTGTTCCACAGAAGAGAACTGCGGAAGAAGACGAGCTGGCAGCTCTGCAAGCTGAGATGGCCCTCTAACCAGGTTTGTTCCGTAGCCCAATCTATAAGCTGAGTGAGCTCCGATTAACTTTCTATAATCACACTGTTCAAGTCCAAGTACTCTAAATTTGTAGTTGAACGTTGTTTTATCTTAAAAGATTACCTGTTATGGAGCAGAGAACTGAATTTTAATTGGACATTGCAGGTGGTGCATACGAGTATCATCTTCTGGCAGATTGCATCCGAATCTTCTAAGCGTTTGATTGAAATTTTACACAAATTACCCTTCCCTGCGGCAAGACAATGTATATATAAAGGTGCAAAATTACTGGGATCTTCATCTTAA ATGTTAAACAGGCTTTTTGGTAAACCTAAACAAGAAGCCAATGCTTTGGCTACGTTAGACAAGTTGAATGAGACACTTGAAATGCTGGAGAAGAAAGAGAACGTTCTTATTAAGAAGGCTGCTGCAGAGGTTGAAAAAGCTAAAGAATTCACAAGAGTGAAGAATAAACGAGCGGCCATACAATGTTTGAAGAGGAAAAGGCTTTATGAACAGCAAGTAGAGCAACTTGGAAATTTCCAATTGCGTATCCATGATCAGATGATTATGTTAGAAGGCGCAAAAGCTACAACGGAGACTGTCGATGCTTTGAGAACAGGAGCATCTGCAATGAAGGCCATGCAGAAAGCAACAAACATTGATGATGTGGACAAGACGATGGATGAGATCAATGAGCAGACTGAGAATATGAAACAGATACAGGAAGCGCTGTCAACTCCAATTGGTGCTGCAGCTGATTTCGATGAGGATGAATTGGAGGCAGAACTCGAAGAGCTTGAAAGTGCTGAAAGAGAACTGCGGAAGAAGACGAGCTGGCAGCTCTGCAAGCTGAGATGGCCCTCTAACCAGGTGGTGCATACGAGTATCATCTTCTGGCAGATTGCATCCGAATCTTCTAAGCGTTTGATTGAAATTTTACACAAATTACCCTTCCCTGCGGCAAGACAATGTATATATAAAGGTGCAAAATTACTGGGATCTTCATCTTAA ATGTTAAACAGGCTTTTTGGTAAACCTAAACAAGAAGCCAATGCTTTGGCTACGTTAGACAAGTTGAATGAGACACTTGAAATGCTGGAGAAGAAAGAGAACGTTCTTATTAAGAAGGCTGCTGCAGAGGTTGAAAAAGCTAAAGAATTCACAAGAGTGAAGAATAAACGAGCGGCCATACAATGTTTGAAGAGGAAAAGGCTTTATGAACAGCAAGTAGAGCAACTTGGAAATTTCCAATTGCGTATCCATGATCAGATGATTATGTTAGAAGGCGCAAAAGCTACAACGGAGACTGTCGATGCTTTGAGAACAGGAGCATCTGCAATGAAGGCCATGCAGAAAGCAACAAACATTGATGATGTGGACAAGACGATGGATGAGATCAATGAGCAGACTGAGAATATGAAACAGATACAGGAAGCGCTGTCAACTCCAATTGGTGCTGCAGCTGATTTCGATGAGGATGAATTGGAGGCAGAACTCGAAGAGCTTGAAAGTGCTGAAAGAGAACTGCGGAAGAAGACGAGCTGGCAGCTCTGCAAGCTGAGATGGCCCTCTAACCAGGTGGTGCATACGAGTATCATCTTCTGGCAGATTGCATCCGAATCTTCTAAGCGTTTGATTGAAATTTTACACAAATTACCCTTCCCTGCGGCAAGACAATGTATATATAAAGGTGCAAAATTACTGGGATCTTCATCTTAA MLNRLFGKPKQEANALATLDKLNETLEMLEKKENVLIKKAAAEVEKAKEFTRVKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELESAERELRKKTSWQLCKLRWPSNQVVHTSIIFWQIASESSKRLIEILHKLPFPAARQCIYKGAKLLGSSS Homology
BLAST of Csor.00g269220 vs. ExPASy Swiss-Prot
Match: Q9SZE4 (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=VPS32.2 PE=1 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 7.5e-76 Identity = 155/171 (90.64%), Postives = 163/171 (95.32%), Query Frame = 0
BLAST of Csor.00g269220 vs. ExPASy Swiss-Prot
Match: O82197 (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=VPS32.1 PE=1 SV=1) HSP 1 Score: 277.3 bits (708), Expect = 1.6e-73 Identity = 153/170 (90.00%), Postives = 158/170 (92.94%), Query Frame = 0
BLAST of Csor.00g269220 vs. ExPASy Swiss-Prot
Match: Q7ZVC4 (Charged multivesicular body protein 4b OS=Danio rerio OX=7955 GN=chmp4b PE=2 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.8e-21 Identity = 72/163 (44.17%), Postives = 95/163 (58.28%), Query Frame = 0
BLAST of Csor.00g269220 vs. ExPASy Swiss-Prot
Match: Q6IQ73 (Charged multivesicular body protein 4c OS=Danio rerio OX=7955 GN=chmp4c PE=2 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 5.3e-21 Identity = 72/163 (44.17%), Postives = 94/163 (57.67%), Query Frame = 0
BLAST of Csor.00g269220 vs. ExPASy Swiss-Prot
Match: Q5XGW6 (Charged multivesicular body protein 4b OS=Xenopus laevis OX=8355 GN=chmp4b PE=2 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.2e-20 Identity = 72/172 (41.86%), Postives = 99/172 (57.56%), Query Frame = 0
BLAST of Csor.00g269220 vs. NCBI nr
Match: KAG6586464.1 (Vacuolar protein sorting-associated protein 32-like 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 439 bits (1129), Expect = 7.54e-155 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
BLAST of Csor.00g269220 vs. NCBI nr
Match: KAG6599497.1 (Vacuolar protein sorting-associated protein 32-like 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 333 bits (853), Expect = 3.87e-113 Identity = 186/219 (84.93%), Postives = 196/219 (89.50%), Query Frame = 0
BLAST of Csor.00g269220 vs. NCBI nr
Match: XP_022937864.1 (vacuolar protein sorting-associated protein 32 homolog 2 [Cucurbita moschata] >XP_022937865.1 vacuolar protein sorting-associated protein 32 homolog 2 [Cucurbita moschata] >XP_022937866.1 vacuolar protein sorting-associated protein 32 homolog 2 [Cucurbita moschata] >XP_022937867.1 vacuolar protein sorting-associated protein 32 homolog 2 [Cucurbita moschata] >XP_023536810.1 vacuolar protein sorting-associated protein 32 homolog 2 [Cucurbita pepo subsp. pepo] >XP_023536811.1 vacuolar protein sorting-associated protein 32 homolog 2 [Cucurbita pepo subsp. pepo] >XP_023536812.1 vacuolar protein sorting-associated protein 32 homolog 2 [Cucurbita pepo subsp. pepo] >KAG7021320.1 Vacuolar protein sorting-associated protein 32-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 307 bits (787), Expect = 5.11e-103 Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0
BLAST of Csor.00g269220 vs. NCBI nr
Match: XP_022965914.1 (vacuolar protein sorting-associated protein 32 homolog 2 [Cucurbita maxima] >XP_022965915.1 vacuolar protein sorting-associated protein 32 homolog 2 [Cucurbita maxima] >XP_022965916.1 vacuolar protein sorting-associated protein 32 homolog 2 [Cucurbita maxima] >XP_022965917.1 vacuolar protein sorting-associated protein 32 homolog 2 [Cucurbita maxima]) HSP 1 Score: 307 bits (787), Expect = 5.11e-103 Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0
BLAST of Csor.00g269220 vs. NCBI nr
Match: KAG7030473.1 (Vacuolar protein sorting-associated protein 32-like 2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 301 bits (770), Expect = 1.97e-100 Identity = 165/171 (96.49%), Postives = 169/171 (98.83%), Query Frame = 0
BLAST of Csor.00g269220 vs. ExPASy TrEMBL
Match: A0A6J1HQ32 (vacuolar protein sorting-associated protein 32 homolog 2 OS=Cucurbita maxima OX=3661 GN=LOC111465657 PE=4 SV=1) HSP 1 Score: 307 bits (787), Expect = 2.47e-103 Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0
BLAST of Csor.00g269220 vs. ExPASy TrEMBL
Match: A0A6J1FBK1 (vacuolar protein sorting-associated protein 32 homolog 2 OS=Cucurbita moschata OX=3662 GN=LOC111444128 PE=4 SV=1) HSP 1 Score: 307 bits (787), Expect = 2.47e-103 Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0
BLAST of Csor.00g269220 vs. ExPASy TrEMBL
Match: A0A6J1G2S3 (vacuolar protein sorting-associated protein 32 homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC111450291 PE=4 SV=1) HSP 1 Score: 300 bits (767), Expect = 2.73e-100 Identity = 164/171 (95.91%), Postives = 169/171 (98.83%), Query Frame = 0
BLAST of Csor.00g269220 vs. ExPASy TrEMBL
Match: A0A6J1DML3 (vacuolar protein sorting-associated protein 32 homolog 2-like OS=Momordica charantia OX=3673 GN=LOC111021942 PE=4 SV=1) HSP 1 Score: 300 bits (767), Expect = 2.82e-100 Identity = 164/171 (95.91%), Postives = 169/171 (98.83%), Query Frame = 0
BLAST of Csor.00g269220 vs. ExPASy TrEMBL
Match: A0A6J1KB41 (vacuolar protein sorting-associated protein 32 homolog 2-like OS=Cucurbita maxima OX=3661 GN=LOC111493861 PE=4 SV=1) HSP 1 Score: 299 bits (765), Expect = 5.49e-100 Identity = 164/171 (95.91%), Postives = 168/171 (98.25%), Query Frame = 0
BLAST of Csor.00g269220 vs. TAIR 10
Match: AT4G29160.1 (SNF7 family protein ) HSP 1 Score: 285.0 bits (728), Expect = 5.3e-77 Identity = 155/171 (90.64%), Postives = 163/171 (95.32%), Query Frame = 0
BLAST of Csor.00g269220 vs. TAIR 10
Match: AT4G29160.3 (SNF7 family protein ) HSP 1 Score: 285.0 bits (728), Expect = 5.3e-77 Identity = 155/171 (90.64%), Postives = 163/171 (95.32%), Query Frame = 0
BLAST of Csor.00g269220 vs. TAIR 10
Match: AT2G19830.1 (SNF7 family protein ) HSP 1 Score: 277.3 bits (708), Expect = 1.1e-74 Identity = 153/170 (90.00%), Postives = 158/170 (92.94%), Query Frame = 0
BLAST of Csor.00g269220 vs. TAIR 10
Match: AT4G29160.2 (SNF7 family protein ) HSP 1 Score: 236.9 bits (603), Expect = 1.7e-62 Identity = 130/144 (90.28%), Postives = 137/144 (95.14%), Query Frame = 0
BLAST of Csor.00g269220 vs. TAIR 10
Match: AT5G09260.1 (vacuolar protein sorting-associated protein 20.2 ) HSP 1 Score: 57.4 bits (137), Expect = 1.8e-08 Identity = 49/167 (29.34%), Postives = 81/167 (48.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|