Csor.00g268440 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g268440
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionProhibitin
LocationCsor_Chr15: 424754 .. 425053 (+)
RNA-Seq ExpressionCsor.00g268440
SyntenyCsor.00g268440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGTTGTAACGAAACAGAAGAGACTATTTTGCGATTTGGAATTGAAGGGGAAGATTTGGGCCGCCCGTGGGTTGGGCTGCTTAATCTGGGCCGCCCGTCGGCTGGGCTGCTTAAGCTGGGAGGCCCGTGGGTTGGGCTGCTTAAGCTGGGCCGCCCGTGCGTTGCGCTGCTTAAGCTGGGCCTCCCGTGGGCTGGACTGCTTCAGCTGGGCCGTTTGGGCAAGGCGGCCGAGTGTAGGGCCACTTCTTATGTTCTCAAGACCCTTCTTCAAAACCCTACTTCTCAAGAAAGATGA

mRNA sequence

ATGGGAAGTTGTAACGAAACAGAAGAGACTATTTTGCGATTTGGAATTGAAGGGGAAGATTTGGGCCGCCCGTGGGTTGGGCTGCTTAATCTGGGCCGCCCGTCGGCTGGGCTGCTTAAGCTGGGAGGCCCGTGGGTTGGGCTGCTTAAGCTGGGCCGCCCGTGCGTTGCGCTGCTTAAGCTGGGCCTCCCGTGGGCTGGACTGCTTCAGCTGGGCCGTTTGGGCAAGGCGGCCGAGTGTAGGGCCACTTCTTATGTTCTCAAGACCCTTCTTCAAAACCCTACTTCTCAAGAAAGATGA

Coding sequence (CDS)

ATGGGAAGTTGTAACGAAACAGAAGAGACTATTTTGCGATTTGGAATTGAAGGGGAAGATTTGGGCCGCCCGTGGGTTGGGCTGCTTAATCTGGGCCGCCCGTCGGCTGGGCTGCTTAAGCTGGGAGGCCCGTGGGTTGGGCTGCTTAAGCTGGGCCGCCCGTGCGTTGCGCTGCTTAAGCTGGGCCTCCCGTGGGCTGGACTGCTTCAGCTGGGCCGTTTGGGCAAGGCGGCCGAGTGTAGGGCCACTTCTTATGTTCTCAAGACCCTTCTTCAAAACCCTACTTCTCAAGAAAGATGA

Protein sequence

MGSCNETEETILRFGIEGEDLGRPWVGLLNLGRPSAGLLKLGGPWVGLLKLGRPCVALLKLGLPWAGLLQLGRLGKAAECRATSYVLKTLLQNPTSQER
Homology
[Close]
BLAST of Csor.00g268440 vs. NCBI nr
Match: KAG6578379.1 (hypothetical protein SDJN03_22827, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (506), Expect = 2.70e-64
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MGSCNETEETILRFGIEGEDLGRPWVGLLNLGRPSAGLLKLGGPWVGLLKLGRPCVALLK 60
          MGSCNETEETILRFGIEGEDLGRPWVGLLNLGRPSAGLLKLGGPWVGLLKLGRPCVALLK
Sbjct: 1  MGSCNETEETILRFGIEGEDLGRPWVGLLNLGRPSAGLLKLGGPWVGLLKLGRPCVALLK 60

Query: 61 LGLPWAGLLQLGRLGKAAECRATSYVLKTLLQNPTSQER 99
          LGLPWAGLLQLGRLGKAAECRATSYVLKTLLQNPTSQER
Sbjct: 61 LGLPWAGLLQLGRLGKAAECRATSYVLKTLLQNPTSQER 99

[Close]
BLAST of Csor.00g268440 vs. NCBI nr
Match: XP_022992616.1 (prohibitin-4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 9.02e-15
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 1  MGSCNETEETILRFGIEGEDLGRPWVGLLNLGRPSAGLLKLGGPW 45
          MGSCNETEETILRFGIEGEDLGRPWVGLL LGR    LLKLG P+
Sbjct: 1  MGSCNETEETILRFGIEGEDLGRPWVGLLKLGRACVALLKLGLPF 45

[Close]
BLAST of Csor.00g268440 vs. NCBI nr
Match: KAG6578408.1 (Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 1.95e-11
Identity = 52/105 (49.52%), Postives = 55/105 (52.38%), Query Frame = 0 

Query: 25  WVGLLNLGRPSAGLLKLGGPWVGLLK---------LGRPCVALLKLGLP----------- 84
           W+G L+      G L      VGLL           G P VALLKLGLP           
Sbjct: 511 WLGCLSWATRGLGCLSWASRLVGLLSWAARRCAASAGPPVVALLKLGLPFGWAASAGPPV 570

Query: 85  ------WA----GLLQLGRLGKAAECRATSYVLKTLLQNPTSQER 99
                 WA    GLL+ GRLGKAAECRATS VLKTLLQNPTSQER
Sbjct: 571 GCACLSWASRLVGLLKPGRLGKAAECRATSSVLKTLLQNPTSQER 615

[Close]
BLAST of Csor.00g268440 vs. NCBI nr
Match: KAG7275264.1 (hypothetical protein CRUP_034991 [Coryphaenoides rupestris])

HSP 1 Score: 54.3 bits (129), Expect = 6.08e-06
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 21 LGRPWVGLLNLGRPSAGLLKLGGPWVGLLKLGRPCVALLKLGLPWAGLLQL 71
          LG P +GLL LG P  GLLKLG P +GLLKLG P +  LKLG P  GLL+L
Sbjct: 24 LGSPDLGLLKLGSPDLGLLKLGSPDLGLLKLGSPDLGPLKLGSPDMGLLKL 74

[Close]
BLAST of Csor.00g268440 vs. ExPASy TrEMBL
Match: A0A6J1JU21 (Prohibitin OS=Cucurbita maxima OX=3661 GN=LOC111488908 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.37e-15
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 1  MGSCNETEETILRFGIEGEDLGRPWVGLLNLGRPSAGLLKLGGPW 45
          MGSCNETEETILRFGIEGEDLGRPWVGLL LGR    LLKLG P+
Sbjct: 1  MGSCNETEETILRFGIEGEDLGRPWVGLLKLGRACVALLKLGLPF 45

The following BLAST results are available for this feature:
BLAST of Csor.00g268440 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g268440 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578379.12.70e-64100.00hypothetical protein SDJN03_22827, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022992616.19.02e-1584.44prohibitin-4, mitochondrial-like [Cucurbita maxima][more]
KAG6578408.11.95e-1149.52Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform... [more]
KAG7275264.16.08e-0662.75hypothetical protein CRUP_034991 [Coryphaenoides rupestris][more]
BLAST of Csor.00g268440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JU214.37e-1584.44Prohibitin OS=Cucurbita maxima OX=3661 GN=LOC111488908 PE=3 SV=1[more]
BLAST of Csor.00g268440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g268440.m01Csor.00g268440.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005743 mitochondrial inner membrane