Csor.00g268370 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCTCATGTGCTTCCCTTTGCAGTAAATCGGAATGCTCCGCCGTGAAGCCACCGCCGGCGCCGTCGGAGTCTGTGAAGGACAAGTTTGAGATTCCACCTTCACCGATCAAACACTACAAGCTCCAAGACAACGCCGATTCTGTCTTCAAGGACATCTCTGTAGTACCCCATCACCACAAGACGCCTTCTGGTTCGATTCTTCTTCGCTCTTTTCTGGGTTTTGTTTTCCTCTCTGTTCTCTTTCCGCCGCGCCATTCCTGGATTGCCCTGTTTCTTCAATCTGTTTGTTCTTCACAGGCAGCAAAGAAGAAGCCTTCTTTGATTCTCGAGCGTGGTTGGATTCCGATTGTGAAGATTTCTTCAGTGTCAAAGGAGGTGACCATCATCATCCAAGATTTCAATTTCCTTTTTCAGATTATTTAGATTCATAAATCACAAATTAATGGTAATAGAATTGTTTTAGCTCAAATCATGTAAGCATGGAGGTTTGAATTGTAGGTCGGATTAAAAACAAACATATATTCTTTAAAAGATTTAAATTTGATTTTCATCATCAACTTTTGTATTTTTAAACTTGCTTTAAATTTATATATTAATTAAAAGTACTTTTTAAAAACTATGTTGAGGATGGTTATATATTTTAAAGTTTACTCATTTTAGTTTTGAAGTTTGTTCCCTCCCTTGTATTTTTAATTCTTGAAATACAAAAAATAACTATTTTAGTTAGAAATAATTATTGAGTAAACTAAATTTAAGATTAAAAAAAAAAATAACATACCAATATGATGAAAATAATTATTTATTCAAGTATAATAAGTTTGAAATACTAAAACTTAAATTTAAACCTTATACAGATTTCACCCCATCCAGAGACAATACTCCAATTCACCACCGCTTTACGGCGGGAACTCCCCGAGCTAGCCAAGCCGGTGCCGACGACAAACCATCTACATTCAACTCGTCGCCATTACCGACGAAGAGGAGGAAGAAACTGGCTGATCTATTCCGAGAGAGCCTCGGAGATGAGGCGAGTTTTGCTTTCCTAAATCACGACGACAATCGGAAAACCGATGAGCCTTGCCTTCCGGGAACTGGTTCGGTCTGCAATAGCGAGAGGACAGTCGGCAACGGCGTTGATGACAAAAATATGATCGGATTTGAGTCGAAGTTCTGTTGCCTTCCGCCGCTGGTTTCGCGTAACAGTTGGCGCGAGAGGAAGGAGGAATTGAAGGTTGTTAATGGCGTATCTTGA ATGGGCTCATGTGCTTCCCTTTGCAGTAAATCGGAATGCTCCGCCGTGAAGCCACCGCCGGCGCCGTCGGAGTCTGTGAAGGACAAGTTTGAGATTCCACCTTCACCGATCAAACACTACAAGCTCCAAGACAACGCCGATTCTGTCTTCAAGGACATCTCTGTAGTACCCCATCACCACAAGACGCCTTCTGGCAGCAAAGAAGAAGCCTTCTTTGATTCTCGAGCGTGGTTGGATTCCGATTGTGAAGATTTCTTCAGTGTCAAAGGAGATTTCACCCCATCCAGAGACAATACTCCAATTCACCACCGCTTTACGGCGGGAACTCCCCGAGCTAGCCAAGCCGGTGCCGACGACAAACCATCTACATTCAACTCGTCGCCATTACCGACGAAGAGGAGGAAGAAACTGGCTGATCTATTCCGAGAGAGCCTCGGAGATGAGGCGAGTTTTGCTTTCCTAAATCACGACGACAATCGGAAAACCGATGAGCCTTGCCTTCCGGGAACTGGTTCGGTCTGCAATAGCGAGAGGACAGTCGGCAACGGCGTTGATGACAAAAATATGATCGGATTTGAGTCGAAGTTCTGTTGCCTTCCGCCGCTGGTTTCGCGTAACAGTTGGCGCGAGAGGAAGGAGGAATTGAAGGTTGTTAATGGCGTATCTTGA ATGGGCTCATGTGCTTCCCTTTGCAGTAAATCGGAATGCTCCGCCGTGAAGCCACCGCCGGCGCCGTCGGAGTCTGTGAAGGACAAGTTTGAGATTCCACCTTCACCGATCAAACACTACAAGCTCCAAGACAACGCCGATTCTGTCTTCAAGGACATCTCTGTAGTACCCCATCACCACAAGACGCCTTCTGGCAGCAAAGAAGAAGCCTTCTTTGATTCTCGAGCGTGGTTGGATTCCGATTGTGAAGATTTCTTCAGTGTCAAAGGAGATTTCACCCCATCCAGAGACAATACTCCAATTCACCACCGCTTTACGGCGGGAACTCCCCGAGCTAGCCAAGCCGGTGCCGACGACAAACCATCTACATTCAACTCGTCGCCATTACCGACGAAGAGGAGGAAGAAACTGGCTGATCTATTCCGAGAGAGCCTCGGAGATGAGGCGAGTTTTGCTTTCCTAAATCACGACGACAATCGGAAAACCGATGAGCCTTGCCTTCCGGGAACTGGTTCGGTCTGCAATAGCGAGAGGACAGTCGGCAACGGCGTTGATGACAAAAATATGATCGGATTTGAGTCGAAGTTCTGTTGCCTTCCGCCGCTGGTTTCGCGTAACAGTTGGCGCGAGAGGAAGGAGGAATTGAAGGTTGTTAATGGCGTATCTTGA MGSCASLCSKSECSAVKPPPAPSESVKDKFEIPPSPIKHYKLQDNADSVFKDISVVPHHHKTPSGSKEEAFFDSRAWLDSDCEDFFSVKGDFTPSRDNTPIHHRFTAGTPRASQAGADDKPSTFNSSPLPTKRRKKLADLFRESLGDEASFAFLNHDDNRKTDEPCLPGTGSVCNSERTVGNGVDDKNMIGFESKFCCLPPLVSRNSWRERKEELKVVNGVS Homology
BLAST of Csor.00g268370 vs. ExPASy Swiss-Prot
Match: Q9LK32 (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana OX=3702 GN=Y-2 PE=1 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 6.6e-13 Identity = 56/128 (43.75%), Postives = 69/128 (53.91%), Query Frame = 0
BLAST of Csor.00g268370 vs. NCBI nr
Match: KAG6578372.1 (hypothetical protein SDJN03_22820, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 461 bits (1187), Expect = 3.98e-164 Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
BLAST of Csor.00g268370 vs. NCBI nr
Match: XP_022992625.1 (uncharacterized protein LOC111488914 [Cucurbita maxima]) HSP 1 Score: 430 bits (1106), Expect = 8.93e-152 Identity = 210/222 (94.59%), Postives = 213/222 (95.95%), Query Frame = 0
BLAST of Csor.00g268370 vs. NCBI nr
Match: XP_023550243.1 (uncharacterized protein At3g27210-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 423 bits (1088), Expect = 4.96e-149 Identity = 208/222 (93.69%), Postives = 212/222 (95.50%), Query Frame = 0
BLAST of Csor.00g268370 vs. NCBI nr
Match: XP_022938376.1 (uncharacterized protein At3g27210-like [Cucurbita moschata]) HSP 1 Score: 418 bits (1074), Expect = 5.25e-147 Identity = 206/222 (92.79%), Postives = 210/222 (94.59%), Query Frame = 0
BLAST of Csor.00g268370 vs. NCBI nr
Match: XP_038884376.1 (uncharacterized protein At3g27210-like [Benincasa hispida]) HSP 1 Score: 351 bits (901), Expect = 1.40e-120 Identity = 174/222 (78.38%), Postives = 192/222 (86.49%), Query Frame = 0
BLAST of Csor.00g268370 vs. ExPASy TrEMBL
Match: A0A6J1JW82 (uncharacterized protein LOC111488914 OS=Cucurbita maxima OX=3661 GN=LOC111488914 PE=4 SV=1) HSP 1 Score: 430 bits (1106), Expect = 4.32e-152 Identity = 210/222 (94.59%), Postives = 213/222 (95.95%), Query Frame = 0
BLAST of Csor.00g268370 vs. ExPASy TrEMBL
Match: A0A6J1FCZ7 (uncharacterized protein At3g27210-like OS=Cucurbita moschata OX=3662 GN=LOC111444643 PE=4 SV=1) HSP 1 Score: 418 bits (1074), Expect = 2.54e-147 Identity = 206/222 (92.79%), Postives = 210/222 (94.59%), Query Frame = 0
BLAST of Csor.00g268370 vs. ExPASy TrEMBL
Match: A0A0A0LT18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406740 PE=4 SV=1) HSP 1 Score: 332 bits (852), Expect = 2.60e-113 Identity = 165/228 (72.37%), Postives = 192/228 (84.21%), Query Frame = 0
BLAST of Csor.00g268370 vs. ExPASy TrEMBL
Match: A0A1S3B2S0 (uncharacterized protein LOC103485490 OS=Cucumis melo OX=3656 GN=LOC103485490 PE=4 SV=1) HSP 1 Score: 311 bits (797), Expect = 5.34e-105 Identity = 159/228 (69.74%), Postives = 184/228 (80.70%), Query Frame = 0
BLAST of Csor.00g268370 vs. ExPASy TrEMBL
Match: A0A5A7UN11 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00290 PE=4 SV=1) HSP 1 Score: 289 bits (740), Expect = 9.71e-96 Identity = 158/268 (58.96%), Postives = 183/268 (68.28%), Query Frame = 0
BLAST of Csor.00g268370 vs. TAIR 10
Match: AT3G01860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 80.1 bits (196), Expect = 2.5e-15 Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 0
BLAST of Csor.00g268370 vs. TAIR 10
Match: AT3G01860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 76.3 bits (186), Expect = 3.6e-14 Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0
BLAST of Csor.00g268370 vs. TAIR 10
Match: AT3G27210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25 species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). ) HSP 1 Score: 75.9 bits (185), Expect = 4.7e-14 Identity = 56/128 (43.75%), Postives = 69/128 (53.91%), Query Frame = 0
BLAST of Csor.00g268370 vs. TAIR 10
Match: AT5G40860.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 69 Blast hits to 69 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 68.6 bits (166), Expect = 7.4e-12 Identity = 53/157 (33.76%), Postives = 84/157 (53.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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