Csor.00g268200 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g268200
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic
Location	Csor_Chr15: 333605 .. 334006 (-)
RNA-Seq Expression	Csor.00g268200
Synteny	Csor.00g268200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCCGACTCCAATTCGCCATGGAAGTGGAACACAGCAATCACGAACAACTTCCACACCAAGGCTGACCACCACCATTTCTCTCTCCCCAACATTTTCGACGCCAATCGCCGGAACGCAAAGCAACCGCCACCCCTAGTCTTGGACGCCGGCGGAGGAGCTGGAGTTGGCTGCGGCGTCGGGCTCGGCTTTGGTCTTGTCGGCGGGATTGGCCATGGCGGCGCCTCTCCCTGGAATCACCTTCACCTCGTTTTCGGCCTCGGTCTCGGCTGTGGCGTTGGCCTAGGGCTTGGAATTGGCAAAGGGATTGGCTATGGCATCTCCTTCGACTCTCTCGATTCTTATTTCTCTGATCACAAACCGAACCCTAGACAGAAGCCTCCTCTGATTCAGATTTGA

mRNA sequence

ATGAAATCCGACTCCAATTCGCCATGGAAGTGGAACACAGCAATCACGAACAACTTCCACACCAAGGCTGACCACCACCATTTCTCTCTCCCCAACATTTTCGACGCCAATCGCCGGAACGCAAAGCAACCGCCACCCCTAGTCTTGGACGCCGGCGGAGGAGCTGGAGTTGGCTGCGGCGTCGGGCTCGGCTTTGGTCTTGTCGGCGGGATTGGCCATGGCGGCGCCTCTCCCTGGAATCACCTTCACCTCGTTTTCGGCCTCGGTCTCGGCTGTGGCGTTGGCCTAGGGCTTGGAATTGGCAAAGGGATTGGCTATGGCATCTCCTTCGACTCTCTCGATTCTTATTTCTCTGATCACAAACCGAACCCTAGACAGAAGCCTCCTCTGATTCAGATTTGA

Coding sequence (CDS)

ATGAAATCCGACTCCAATTCGCCATGGAAGTGGAACACAGCAATCACGAACAACTTCCACACCAAGGCTGACCACCACCATTTCTCTCTCCCCAACATTTTCGACGCCAATCGCCGGAACGCAAAGCAACCGCCACCCCTAGTCTTGGACGCCGGCGGAGGAGCTGGAGTTGGCTGCGGCGTCGGGCTCGGCTTTGGTCTTGTCGGCGGGATTGGCCATGGCGGCGCCTCTCCCTGGAATCACCTTCACCTCGTTTTCGGCCTCGGTCTCGGCTGTGGCGTTGGCCTAGGGCTTGGAATTGGCAAAGGGATTGGCTATGGCATCTCCTTCGACTCTCTCGATTCTTATTTCTCTGATCACAAACCGAACCCTAGACAGAAGCCTCCTCTGATTCAGATTTGA

Protein sequence

MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDHKPNPRQKPPLIQI

Homology

[Close]

BLAST of Csor.00g268200 vs. NCBI nr
Match: KAG6578355.1 (hypothetical protein SDJN03_22803, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 277 bits (708), Expect = 5.10e-94
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG 60
           MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG
Sbjct: 1   MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG 60

Query: 61  VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDH 120
           VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDH
Sbjct: 61  VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDH 120

Query: 121 KPNPRQKPPLIQI 133
           KPNPRQKPPLIQI
Sbjct: 121 KPNPRQKPPLIQI 133

[Close]

BLAST of Csor.00g268200 vs. NCBI nr
Match: KGN63146.1 (hypothetical protein Csa_022245 [Cucumis sativus])

HSP 1 Score: 156 bits (394), Expect = 2.35e-46
Identity = 89/135 (65.93%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 1   MKSDS-NSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGC 60
           MKSDS NSPW       NNF T            FD +RRN K+ P LVL+AGGGAGVGC
Sbjct: 1   MKSDSSNSPW-------NNFPTIF---------CFDQDRRNTKELPALVLEAGGGAGVGC 60

Query: 61  GVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSD 120
           G+G+GFGLVGGIGH GASPWNHLHLVFGLG GCGVGLGLGIG+G GYG+SF S+DSYFS 
Sbjct: 61  GLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSH 119

Query: 121 HKPNPRQKPP-LIQI 133
              NP+ K P LIQ 
Sbjct: 121 LISNPKPKQPSLIQF 119

[Close]

BLAST of Csor.00g268200 vs. NCBI nr
Match: KAA0051071.1 (fibroin heavy chain [Cucumis melo var. makuwa] >TYK02741.1 fibroin heavy chain [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (393), Expect = 3.67e-46
Identity = 92/137 (67.15%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 1   MKSDSNS-PWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPL--VLDAGGGAGV 60
           MKSDS+S PW       NNFHT      FS    FD +RRN K+ P L  VL+AGGGAGV
Sbjct: 1   MKSDSSSSPW-------NNFHTTI----FS----FDHDRRNTKELPALALVLEAGGGAGV 60

Query: 61  GCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYF 120
           GCG+G GFGLVGGIGHGGASPWNHLHLVFGLG GCGVGLGLGIG+G GYG SF+SLDSYF
Sbjct: 61  GCGLGFGFGLVGGIGHGGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGFSFESLDSYF 120

Query: 121 SDHKPNPRQKPP-LIQI 133
           S    +P+ K P LIQ 
Sbjct: 121 SHLNSDPKHKQPSLIQF 122

[Close]

BLAST of Csor.00g268200 vs. NCBI nr
Match: KAE8022053.1 (hypothetical protein FH972_007887 [Carpinus fangiana])

HSP 1 Score: 118 bits (296), Expect = 2.72e-31
Identity = 66/131 (50.38%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 1   MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG 60
           +K+DS+S WKWN  ++N    K +   F +   F   R  A++   +VL  G G G+GCG
Sbjct: 8   IKADSDSIWKWNGNLSNK--KKNEKKQFPVAKFFQNGREAAEE---VVLGPGVGVGIGCG 67

Query: 61  VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDH 120
           VG+GFGLVGGIG+GG  PWNHL +VFG G+GCGVGLG G G+GIGYG S +SL+SY S  
Sbjct: 68  VGMGFGLVGGIGYGG-WPWNHLQVVFGAGIGCGVGLGFGYGQGIGYGFSLESLESYTSKR 127

Query: 121 KPNPRQKPPLI 131
             +  +K  L+
Sbjct: 128 SSDSNKKKILM 132

[Close]

BLAST of Csor.00g268200 vs. NCBI nr
Match: XP_030955948.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic [Quercus lobata])

HSP 1 Score: 116 bits (291), Expect = 1.85e-30
Identity = 66/135 (48.89%), Postives = 89/135 (65.93%), Query Frame = 0


Query: 1   MKSDSNSPWK-WNTAITNNF-HTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVG 60
           +K+DS+S W  WN   +N   + K    HF +      N + A++   +VL  GGG G+G
Sbjct: 8   IKTDSDSFWNIWNENSSNKKKNEKKKKKHFPVSKFLHNNPKKAEE---IVLGPGGGVGIG 67

Query: 61  CGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFS 120
           CGVGLGFGLVGG+G+GG  PWNHL LV G+G+GCGVG+G G G+GIGYG S +SL+SY S
Sbjct: 68  CGVGLGFGLVGGVGYGG-WPWNHLQLVIGIGIGCGVGVGFGYGQGIGYGFSLESLESYLS 127

Query: 121 DHKPNPRQKPPLIQI 133
               +  +K  +I+I
Sbjct: 128 KQSSSDSKKRVVIEI 138

[Close]

BLAST of Csor.00g268200 vs. ExPASy TrEMBL
Match: A0A0A0LSZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404970 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 1.14e-46
Identity = 89/135 (65.93%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 1   MKSDS-NSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGC 60
           MKSDS NSPW       NNF T            FD +RRN K+ P LVL+AGGGAGVGC
Sbjct: 1   MKSDSSNSPW-------NNFPTIF---------CFDQDRRNTKELPALVLEAGGGAGVGC 60

Query: 61  GVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSD 120
           G+G+GFGLVGGIGH GASPWNHLHLVFGLG GCGVGLGLGIG+G GYG+SF S+DSYFS 
Sbjct: 61  GLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSH 119

Query: 121 HKPNPRQKPP-LIQI 133
              NP+ K P LIQ 
Sbjct: 121 LISNPKPKQPSLIQF 119

[Close]

BLAST of Csor.00g268200 vs. ExPASy TrEMBL
Match: A0A5A7UC28 (Fibroin heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00440 PE=4 SV=1)

HSP 1 Score: 155 bits (393), Expect = 1.78e-46
Identity = 92/137 (67.15%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 1   MKSDSNS-PWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPL--VLDAGGGAGV 60
           MKSDS+S PW       NNFHT      FS    FD +RRN K+ P L  VL+AGGGAGV
Sbjct: 1   MKSDSSSSPW-------NNFHTTI----FS----FDHDRRNTKELPALALVLEAGGGAGV 60

Query: 61  GCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYF 120
           GCG+G GFGLVGGIGHGGASPWNHLHLVFGLG GCGVGLGLGIG+G GYG SF+SLDSYF
Sbjct: 61  GCGLGFGFGLVGGIGHGGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGFSFESLDSYF 120

Query: 121 SDHKPNPRQKPP-LIQI 133
           S    +P+ K P LIQ 
Sbjct: 121 SHLNSDPKHKQPSLIQF 122

[Close]

BLAST of Csor.00g268200 vs. ExPASy TrEMBL
Match: A0A5N6QWW9 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007887 PE=4 SV=1)

HSP 1 Score: 118 bits (296), Expect = 1.32e-31
Identity = 66/131 (50.38%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 1   MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG 60
           +K+DS+S WKWN  ++N    K +   F +   F   R  A++   +VL  G G G+GCG
Sbjct: 8   IKADSDSIWKWNGNLSNK--KKNEKKQFPVAKFFQNGREAAEE---VVLGPGVGVGIGCG 67

Query: 61  VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDH 120
           VG+GFGLVGGIG+GG  PWNHL +VFG G+GCGVGLG G G+GIGYG S +SL+SY S  
Sbjct: 68  VGMGFGLVGGIGYGG-WPWNHLQVVFGAGIGCGVGLGFGYGQGIGYGFSLESLESYTSKR 127

Query: 121 KPNPRQKPPLI 131
             +  +K  L+
Sbjct: 128 SSDSNKKKILM 132

[Close]

BLAST of Csor.00g268200 vs. ExPASy TrEMBL
Match: A0A2N9FV55 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19064 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 4.09e-31
Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 1   MKSDSNSPWK-WNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGC 60
           +K+DSNS W  WN   +N    K +   F +      NR  A++   +VL  GGG G+GC
Sbjct: 8   IKADSNSFWNIWNGNNSNK--KKNEKKQFPVSKFLHNNRMKAEE---IVLGPGGGVGIGC 67

Query: 61  GVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSD 120
           GVG+GFGLVGGIG+GG  PWNHL LVFG+G+GCGVG+G G G+GIG G S DSL+SY S 
Sbjct: 68  GVGMGFGLVGGIGYGG-WPWNHLQLVFGVGMGCGVGVGFGYGQGIGNGFSLDSLESYLSK 127

Query: 121 HKPNPRQKPPLIQI 133
              +  +K  +I+I
Sbjct: 128 QSSSDSKKRVVIEI 135

[Close]

BLAST of Csor.00g268200 vs. ExPASy TrEMBL
Match: A0A7N2KWH8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 8.97e-31
Identity = 66/135 (48.89%), Postives = 89/135 (65.93%), Query Frame = 0


Query: 1   MKSDSNSPWK-WNTAITNNF-HTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVG 60
           +K+DS+S W  WN   +N   + K    HF +      N + A++   +VL  GGG G+G
Sbjct: 8   IKTDSDSFWNIWNENSSNKKKNEKKKKKHFPVSKFLHNNPKKAEE---IVLGPGGGVGIG 67

Query: 61  CGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFS 120
           CGVGLGFGLVGG+G+GG  PWNHL LV G+G+GCGVG+G G G+GIGYG S +SL+SY S
Sbjct: 68  CGVGLGFGLVGGVGYGG-WPWNHLQLVIGIGIGCGVGVGFGYGQGIGYGFSLESLESYLS 127

Query: 121 DHKPNPRQKPPLIQI 133
               +  +K  +I+I
Sbjct: 128 KQSSSDSKKRVVIEI 138

[Close]

BLAST of Csor.00g268200 vs. TAIR 10
Match: AT1G66820.1 (glycine-rich protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-11
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 52  GGGAGVGCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFD 111
           G G G+GCG G+G GL GG+G G +   +H ++V G G+GCG+G G G G G+G G SFD
Sbjct: 42  GIGGGIGCGAGIGIGLSGGLGIGASEGLDHSNVVLGFGIGCGIGFGFGYGFGVGGGYSFD 101

Query: 112 SLDSYF 118
            +   F
Sbjct: 102 DIKERF 107

[Close]

BLAST of Csor.00g268200 vs. TAIR 10
Match: AT4G10330.1 (glycine-rich protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-10
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 54  GAGVGCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSL 113
           G GVGCG G G GL+GG+G G   P     L FGLG G G G+G+G G G+G G ++D  
Sbjct: 34  GLGVGCGFGFGAGLIGGVGFGPGVP----GLQFGLGFGAGCGIGVGFGYGVGRGAAYDHS 93

Query: 114 DSYFSDHKPNPRQKPPLI 132
            SY++  KP+  +   LI
Sbjct: 94  RSYYNVGKPSLNEVDSLI 107

The following BLAST results are available for this feature:

BLAST of Csor.00g268200 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g268200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578355.1	5.10e-94	100.00	hypothetical protein SDJN03_22803, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN63146.1	2.35e-46	65.93	hypothetical protein Csa_022245 [Cucumis sativus]	[more]
KAA0051071.1	3.67e-46	67.15	fibroin heavy chain [Cucumis melo var. makuwa] >TYK02741.1 fibroin heavy chain [...	[more]
KAE8022053.1	2.72e-31	50.38	hypothetical protein FH972_007887 [Carpinus fangiana]	[more]
XP_030955948.1	1.85e-30	48.89	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic [Quercus lobata]	[more]

BLAST of Csor.00g268200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSZ2	1.14e-46	65.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404970 PE=4 SV=1	[more]
A0A5A7UC28	1.78e-46	67.15	Fibroin heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154...	[more]
A0A5N6QWW9	1.32e-31	50.38	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007887 PE=4 SV=1	[more]
A0A2N9FV55	4.09e-31	50.75	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19064 PE=4 SV=1	[more]
A0A7N2KWH8	8.97e-31	48.89	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Csor.00g268200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66820.1	2.2e-11	48.48	glycine-rich protein	[more]
AT4G10330.1	1.4e-10	46.15	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34201	GLYCINE-RICH PROTEIN	coord: 2..126
None	No IPR available	PANTHER	PTHR34201:SF6	GLYCINE-RICH PROTEIN	coord: 2..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g268200.m01	Csor.00g268200.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane