Csor.00g267460 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g267460
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr12: 10693790 .. 10694989 (+)
RNA-Seq Expression	Csor.00g267460
Synteny	Csor.00g267460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinternalpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGGAAGGAAGGCTTTCTTACCGAACGGTCTTCATCCTTGGGCTAGACAAGAACTTCGTTGGCAAAATGGACCGGATTTAGCTGAAGCGATCATTGCTGCAGAAAGAATGGTAGATGACATGGAAAAACCTACTCGCACAAACAAAGAAACCTCTTCGAGGCAACAAGACGGGGGGAGTAGAGAGCAAAAGAAAAGAAAGGGGAAGAACATGCTACCATACCAAAGAGCTGGGAACAAGCCTGGTAAACCTAACAAAGAAGAGGGAGGGGGTTGCGGTTGTTTCATTTGTGGAGGACCTCAAAGAGAAGAGCCCGTGACTGCCCAAATCAAGATAAATTGAGTGCATTGATCGCAGATGACAGACAGGGAGTTCCGACCCACTCACACATTCAGTCTTTCTTCTCCCTGACGTGATAGGGCTCGTCAGCCAAGTGCTTGCTTCAGTTACAGCCCTCCATTGAATGGGGTGGGAAAGAAAGGTTCGGAAATCTAGGTTTTTGCACGAGTCCAGTGGCAATGAGGAAAGGAAGGACAGCTACAGAAGCAGGTCAGCCTAAGCTGAAAGTCAAGGAAAGGCCCTGTTCCAGTATTGGAGTGGAGGAAGCATGGCATAGAAAGCCGGGTATGTATGTCATGGGTTGTAGGGAAGAGGTAAGACGTGTACATGAAAGCAAGCGAGAGCAGAGCCTAGGGGTGTACACGGATAAACCACTCCAAAGTGATAATGTCTCAAAACGAGGAGGCCATATGGAAACAAGCTGTCAAACTTCCAAGAGAAAGAAGATTGACCCAATCAAAGATCAAATCTATTGACTCTACAAATTTCTCAGCCGAAGGAGCTCTCTTTGTCTAATTCGTAGTCGCCACCCAGTGATCTTTCCCATTTGTGACTCTATAATGCATTCTCCTGCTGTTTGACTCTTCTACGGAGCCATTTCCTTTTCTTTCTCATCTTCAGTATTCCCACGCTTTGTACACCTTTCTTGCCTGCAAAGAATCTCACCCTGGTGATGCTTACTTCATCAAGCCATTAGTCTCACTCAATCAGTCCCTCTCTTCTTCTTCTTCCTCTGCTTCAGGCGTGGGCAGAGCTTTTGATGTCTACCCTATTCGGGTTCTTGACGAACTCCACCGCATCTTTCTCATGCCCTTTCTCCTTCTCAAAACTATCTTCCACACTCACTGTGTCCTTCTGTAG

mRNA sequence

GAAGGAAGGAAGGCTTTCTTACCGAACGGTCTTCATCCTTGGGCTAGACAAGAACTTCGTTGGCAAAATGGACCGGATTTAGCTGAAGCGATCATTGCTGCAGAAAGAATGGTAGATGACATGGAAAAACCTACTCGCACAAACAAAGAAACCTCTTCGAGGCAACAAGACGGGGGGAGTAGAGAGCAAAAGAAAAGAAAGGGGAAGAACATGCTACCATACCAAAGAGCTGGGAACAAGCCTGTGGCAATGAGGAAAGGAAGGACAGCTACAGAAGCAGGTCAGCCTAAGCTGAAAGTCAAGGAAAGGCCCTGTTCCAGTATTGGAGTGGAGGAAGCATGGCATAGAAAGCCGGGTATGTATGTCATGGGTTGTAGGGAAGAGTATTCCCACGCTTTGTACACCTTTCTTGCCTGCAAAGAATCTCACCCTGGTGATGCTTACTTCATCAAGCCATTAGTCTCACTCAATCAGTCCCTCTCTTCTTCTTCTTCCTCTGCTTCAGGCGTGGGCAGAGCTTTTGATGTCTACCCTATTCGGGTTCTTGACGAACTCCACCGCATCTTTCTCATGCCCTTTCTCCTTCTCAAAACTATCTTCCACACTCACTGTGTCCTTCTGTAG

Coding sequence (CDS)

GAAGGAAGGAAGGCTTTCTTACCGAACGGTCTTCATCCTTGGGCTAGACAAGAACTTCGTTGGCAAAATGGACCGGATTTAGCTGAAGCGATCATTGCTGCAGAAAGAATGGTAGATGACATGGAAAAACCTACTCGCACAAACAAAGAAACCTCTTCGAGGCAACAAGACGGGGGGAGTAGAGAGCAAAAGAAAAGAAAGGGGAAGAACATGCTACCATACCAAAGAGCTGGGAACAAGCCTGTGGCAATGAGGAAAGGAAGGACAGCTACAGAAGCAGGTCAGCCTAAGCTGAAAGTCAAGGAAAGGCCCTGTTCCAGTATTGGAGTGGAGGAAGCATGGCATAGAAAGCCGGGTATGTATGTCATGGGTTGTAGGGAAGAGTATTCCCACGCTTTGTACACCTTTCTTGCCTGCAAAGAATCTCACCCTGGTGATGCTTACTTCATCAAGCCATTAGTCTCACTCAATCAGTCCCTCTCTTCTTCTTCTTCCTCTGCTTCAGGCGTGGGCAGAGCTTTTGATGTCTACCCTATTCGGGTTCTTGACGAACTCCACCGCATCTTTCTCATGCCCTTTCTCCTTCTCAAAACTATCTTCCACACTCACTGTGTCCTTCTGTAG

Protein sequence

EGRKAFLPNGLHPWARQELRWQNGPDLAEAIIAAERMVDDMEKPTRTNKETSSRQQDGGSREQKKRKGKNMLPYQRAGNKPVAMRKGRTATEAGQPKLKVKERPCSSIGVEEAWHRKPGMYVMGCREEYSHALYTFLACKESHPGDAYFIKPLVSLNQSLSSSSSSASGVGRAFDVYPIRVLDELHRIFLMPFLLLKTIFHTHCVLL

Homology

[Close]

BLAST of Csor.00g267460 vs. NCBI nr
Match: KAG6585985.1 (hypothetical protein SDJN03_18718, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 413 bits (1061), Expect = 2.05e-145
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   EGRKAFLPNGLHPWARQELRWQNGPDLAEAIIAAERMVDDMEKPTRTNKETSSRQQDGGS 60
           EGRKAFLPNGLHPWARQELRWQNGPDLAEAIIAAERMVDDMEKPTRTNKETSSRQQDGGS
Sbjct: 1   EGRKAFLPNGLHPWARQELRWQNGPDLAEAIIAAERMVDDMEKPTRTNKETSSRQQDGGS 60

Query: 61  REQKKRKGKNMLPYQRAGNKPVAMRKGRTATEAGQPKLKVKERPCSSIGVEEAWHRKPGM 120
           REQKKRKGKNMLPYQRAGNKPVAMRKGRTATEAGQPKLKVKERPCSSIGVEEAWHRKPGM
Sbjct: 61  REQKKRKGKNMLPYQRAGNKPVAMRKGRTATEAGQPKLKVKERPCSSIGVEEAWHRKPGM 120

Query: 121 YVMGCREEYSHALYTFLACKESHPGDAYFIKPLVSLNQSLSSSSSSASGVGRAFDVYPIR 180
           YVMGCREEYSHALYTFLACKESHPGDAYFIKPLVSLNQSLSSSSSSASGVGRAFDVYPIR
Sbjct: 121 YVMGCREEYSHALYTFLACKESHPGDAYFIKPLVSLNQSLSSSSSSASGVGRAFDVYPIR 180

Query: 181 VLDELHRIFLMPFLLLKTIFHTHCVLL 207
           VLDELHRIFLMPFLLLKTIFHTHCVLL
Sbjct: 181 VLDELHRIFLMPFLLLKTIFHTHCVLL 207

The following BLAST results are available for this feature:

BLAST of Csor.00g267460 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g267460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585985.1	2.05e-145	100.00	hypothetical protein SDJN03_18718, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g267460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g267460 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g267460.m01	Csor.00g267460.m01	mRNA