Csor.00g265920 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g265920
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Histone H2A
Location	Csor_Chr17: 9217074 .. 9217997 (-)
RNA-Seq Expression	Csor.00g265920
Synteny	Csor.00g265920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTTAGTGCTTGCTCTTCTCATCGGATCTTTTACTTGTGTTTCCGATCTGTTTATCTGTGGAGTTGTTTTCGTCTGATTGTGATGAAGTGAGGTGGTGTAGTGTAGTGCTTTGATCACTTGAATCGAAATTCTTATATTTGATTTTGTTGGGTTTCGTCTGCTTCGGCTCTGGAATTGATTTGGAGATGATGAATTTCGATTTGTTTCTTTAAATTGATGAAGAAACTATTTGAAATTAGGTTCACCATTGCATAGTAATCTCGAGCTTTGAATTGTGGCCTCCCTTTTTCTCTTGCATGTCATCCAATTGGCTAGAAATTGATACTGAATGCAGCTTATTTAGTTTTACTTGGTGAATAAGATGCCAAAGCCACAAGACTATGTTAGTTTGTTCTTTGGATGAACGAAGTTTCATTTGGGTTCATCCCTATTGTTTCTGTACAATGATGATGAATTGGTTTTGCATTTAAAGTAGCTGAATATACTAAAAATCTTCATTTGCAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGAGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGGGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

mRNA sequence

ATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGAGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGGGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

Coding sequence (CDS)

ATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGAGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGGGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

Protein sequence

MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGSGKGDIGSASQEF

Homology

[Close]

BLAST of Csor.00g265920 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-64
Identity = 129/139 (92.81%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+A+TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of Csor.00g265920 vs. ExPASy Swiss-Prot
Match: Q9S9K7 (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-62
Identity = 126/138 (91.30%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Csor.00g265920 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 4.8e-62
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Csor.00g265920 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-61
Identity = 125/137 (91.24%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 3   SSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 62
           SS+  KGGRGK K+TKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEY
Sbjct: 2   SSSGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEY 61

Query: 63  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLP 122
           LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLP 121

Query: 123 KKAGSGKGDIGSASQEF 140
           KK+G  KG+IGSASQEF
Sbjct: 122 KKSGKDKGEIGSASQEF 138

[Close]

BLAST of Csor.00g265920 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-58
Identity = 121/137 (88.32%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 3   SSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 62
           SSA   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEY
Sbjct: 2   SSAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEY 61

Query: 63  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLP 122
           LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121

Query: 123 KKAGSGKGDIGSASQEF 140
           KK G  K DIGSASQEF
Sbjct: 122 KKGGKDKADIGSASQEF 138

[Close]

BLAST of Csor.00g265920 vs. NCBI nr
Match: XP_022953583.1 (histone H2AX [Cucurbita moschata] >XP_022991732.1 histone H2AX [Cucurbita maxima] >XP_023548485.1 histone H2AX [Cucurbita pepo subsp. pepo] >XP_023548486.1 histone H2AX [Cucurbita pepo subsp. pepo] >KAG6575874.1 Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262 bits (669), Expect = 7.10e-88
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 139
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Csor.00g265920 vs. NCBI nr
Match: XP_022150163.1 (histone H2AX [Momordica charantia])

HSP 1 Score: 260 bits (665), Expect = 2.89e-87
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS STKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 139
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Csor.00g265920 vs. NCBI nr
Match: XP_004148883.1 (histone H2AX [Cucumis sativus] >KGN44844.1 hypothetical protein Csa_016634 [Cucumis sativus])

HSP 1 Score: 259 bits (663), Expect = 5.84e-87
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 139
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Csor.00g265920 vs. NCBI nr
Match: XP_008451417.1 (PREDICTED: histone H2AX [Cucumis melo] >KAA0057549.1 histone H2AX [Cucumis melo var. makuwa] >TYK18270.1 histone H2AX [Cucumis melo var. makuwa])

HSP 1 Score: 258 bits (659), Expect = 2.38e-86
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSAS+KGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 139
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Csor.00g265920 vs. NCBI nr
Match: XP_038896927.1 (histone H2AX-like [Benincasa hispida])

HSP 1 Score: 258 bits (659), Expect = 2.38e-86
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSAS+KGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 139
           LPKKAGS KGDIGSASQEF
Sbjct: 121 LPKKAGSSKGDIGSASQEF 139

[Close]

BLAST of Csor.00g265920 vs. ExPASy TrEMBL
Match: A0A6J1JMN9 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488262 PE=3 SV=1)

HSP 1 Score: 262 bits (669), Expect = 3.44e-88
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 139
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Csor.00g265920 vs. ExPASy TrEMBL
Match: A0A6J1GNQ0 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456077 PE=3 SV=1)

HSP 1 Score: 262 bits (669), Expect = 3.44e-88
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 139
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Csor.00g265920 vs. ExPASy TrEMBL
Match: A0A6J1D8Q1 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018409 PE=3 SV=1)

HSP 1 Score: 260 bits (665), Expect = 1.40e-87
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS STKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 139
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Csor.00g265920 vs. ExPASy TrEMBL
Match: A0A0A0K7H2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390230 PE=3 SV=1)

HSP 1 Score: 259 bits (663), Expect = 2.83e-87
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 139
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Csor.00g265920 vs. ExPASy TrEMBL
Match: A0A5A7UVH7 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002130 PE=3 SV=1)

HSP 1 Score: 258 bits (659), Expect = 1.15e-86
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSAS+KGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 139
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Csor.00g265920 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-63
Identity = 126/138 (91.30%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Csor.00g265920 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 238.4 bits (607), Expect = 3.4e-63
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Csor.00g265920 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 202.2 bits (513), Expect = 2.7e-52
Identity = 109/124 (87.90%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 10  GRGKP----KATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Csor.00g265920 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 202.2 bits (513), Expect = 2.7e-52
Identity = 109/124 (87.90%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 10  GRGKP----KATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Csor.00g265920 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 198.4 bits (503), Expect = 3.9e-51
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           M+    T G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVL
Sbjct: 1   MAGRGKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  L
Sbjct: 61  EYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLL 120

Query: 121 LPKKAGSGK 130
           LPKKAG+ K
Sbjct: 121 LPKKAGASK 126

The following BLAST results are available for this feature:

BLAST of Csor.00g265920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65759	1.8e-64	92.81	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
Q9S9K7	2.1e-62	91.30	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
O04848	4.8e-62	90.58	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
P35063	1.4e-61	91.24	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	1.9e-58	88.32	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]

BLAST of Csor.00g265920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953583.1	7.10e-88	100.00	histone H2AX [Cucurbita moschata] >XP_022991732.1 histone H2AX [Cucurbita maxima...	[more]
XP_022150163.1	2.89e-87	99.28	histone H2AX [Momordica charantia]	[more]
XP_004148883.1	5.84e-87	99.28	histone H2AX [Cucumis sativus] >KGN44844.1 hypothetical protein Csa_016634 [Cucu...	[more]
XP_008451417.1	2.38e-86	98.56	PREDICTED: histone H2AX [Cucumis melo] >KAA0057549.1 histone H2AX [Cucumis melo ...	[more]
XP_038896927.1	2.38e-86	98.56	histone H2AX-like [Benincasa hispida]	[more]

BLAST of Csor.00g265920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMN9	3.44e-88	100.00	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488262 PE=3 SV=1	[more]
A0A6J1GNQ0	3.44e-88	100.00	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456077 PE=3 SV=1	[more]
A0A6J1D8Q1	1.40e-87	99.28	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018409 PE=3 SV=1	[more]
A0A0A0K7H2	2.83e-87	99.28	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390230 PE=3 SV=1	[more]
A0A5A7UVH7	1.15e-86	98.56	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002130 P...	[more]

BLAST of Csor.00g265920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54690.1	1.5e-63	91.30	gamma histone variant H2AX	[more]
AT1G08880.1	3.4e-63	90.58	Histone superfamily protein	[more]
AT4G27230.1	2.7e-52	87.90	histone H2A 2	[more]
AT4G27230.2	2.7e-52	87.90	histone H2A 2	[more]
AT5G54640.1	3.9e-51	83.72	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 47..62 score: 84.58 coord: 62..75 score: 89.46 coord: 18..40 score: 69.94 coord: 76..90 score: 75.49 coord: 104..122 score: 70.48
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 7..127 e-value: 8.0E-78 score: 274.5
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 12..124 e-value: 8.86906E-68 score: 198.713
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 96..129 e-value: 9.2E-19 score: 66.9
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 13..93 e-value: 7.8E-15 score: 55.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 5..131 e-value: 1.2E-63 score: 214.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 21..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 4..137
None	No IPR available	PANTHER	PTHR23430:SF288	HISTONE H2A	coord: 4..137
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 26..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g265920.m01	Csor.00g265920.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity