Csor.00g264200 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g264200
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr11: 13077235 .. 13078759 (-)
RNA-Seq ExpressionCsor.00g264200
SyntenyCsor.00g264200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGAGATGCCTCTAATGTCTGAGATGTTTGAGATCTCTCTGATGTCTGAGATGTCTATAACGTCTAAGATGTCTGAGATGCCTGTAATGTCTCTAATGTTTAAGATGTCTCTAATGTTTGAGATATCTCTAATGTCTGATATGTTTGAGATGTCTCTATATCTAAGATGTCTGAGATGTTCGAGATCTCTCTAATGTCTGAAATGTCTGAGATGTCTCTAATGTCTAAGATGTCTGAGATGTCTACAATGTCTCAGATGTCTCTAATCAAGGTTTTAAATTTGATGGGCTCGACATTTCCTATCCACGTTACGTACTCGCATGTTTTTAAGAAAAATCTACTAAATATCACCCCAGATTTCACTGGAAAAATGTTAACTTTATTGGTATAGACAGTACTATCAATTTTTTAAAACGTTTATTAAGATCTCTATATTAAGGATTAATAAAATGTAATCAAACTCCACTGTTTTGTCGGCAAAATTCAAGACCAGAAAATAATATAAAATAAAAATTTGGAAATCAATTATTTTATTTTATTTTATTTTTTTCCGAAACAGTCCAGACCTGCCATTGCATTCAAAGTCAATTTGTTTGTAATAATAAATATTAAATTAATAATCGTTTTATTCAAGGGAAACCGAATATTAACTGTTAATTTAATAAATCAATAATAATGTATTAAAGTATTTACTCCATTCAACTTTATGAATAAAAAATTATTTAATCAATGCAATTAAATTAAATATTCTCTTTTAATAAATAAATAAATATTTATTTAAGTTATTTTTTAAATTAATGTTACTTAAATTAACTTAGTATAGATATTCATTTTCTAATACTACTTATTTATAATTAATTTTTTTAAATGTTTTGTTAATTAATATATTAAATTTAATCCCATCAATTTAAATATTACAATATAAAAAAATATATTTTTTAGAATTTATCCTAATTTTTATAGTGGAAACATAATTATCATCTCTATCTCCATTTAGTCAATCGAGCATGGACAGCTATTTCTCGAGCATAGGTTTAGGTTCAGCCTCAATAAAACGGACCACCTAACAATGAATCTTCACTGACCAAGAACTACGAGAAATATGCAGCTGGGTTCTCCAGATTGAATAATTAGTTTACATGGTTCGATCTTATCCTTGTCGCTCTCTTTCACAATTTTCATGTAAAGAACGTTTTTTTTCTTCCATATCTAGAACAGGTGCTTGTCGTTAAACGAATATCTGTAATAAAAAAAAAAGACAACATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATGAGTGTTGAAAGAGCTCAATAATTTGAGTTGAATTTGGGTTCCCTATGAGGGTGGCTAGTGAAAGTGATTCAGCGAAGAATGGACCAAAGGCCGGCGGACGCCATGGACCCATGTGCCGCCTGCGCCTGCAACTCCAACCTCGCACGCCTCCCGTTCAACTCACGATTTCGTCTTTAA

mRNA sequence

ATGTTTGAGATGCCTCTAATGTCTGAGATGTTTGAGATCTCTCTGATGTCTGAGATGTCTATAACGTCTAAGATGTCTGAGATGCCTATGTCTGAGATGTTCGAGATCTCTCTAATGTCTGAAATGTCTGAGATGTCTCTAATGTCTAAGATGTCTGAGATGTCTACAATGTCTCAGATGTCTCTAATCAAGCGAAGAATGGACCAAAGGCCGGCGGACGCCATGGACCCATGTGCCGCCTGCGCCTGCAACTCCAACCTCGCACGCCTCCCGTTCAACTCACGATTTCGTCTTTAA

Coding sequence (CDS)

ATGTTTGAGATGCCTCTAATGTCTGAGATGTTTGAGATCTCTCTGATGTCTGAGATGTCTATAACGTCTAAGATGTCTGAGATGCCTATGTCTGAGATGTTCGAGATCTCTCTAATGTCTGAAATGTCTGAGATGTCTCTAATGTCTAAGATGTCTGAGATGTCTACAATGTCTCAGATGTCTCTAATCAAGCGAAGAATGGACCAAAGGCCGGCGGACGCCATGGACCCATGTGCCGCCTGCGCCTGCAACTCCAACCTCGCACGCCTCCCGTTCAACTCACGATTTCGTCTTTAA

Protein sequence

MFEMPLMSEMFEISLMSEMSITSKMSEMPMSEMFEISLMSEMSEMSLMSKMSEMSTMSQMSLIKRRMDQRPADAMDPCAACACNSNLARLPFNSRFRL
Homology
[Close]
BLAST of Csor.00g264200 vs. NCBI nr
Match: KAG6603405.1 (hypothetical protein SDJN03_04014, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 6.71e-10
Identity = 47/81 (58.02%), Postives = 53/81 (65.43%), Query Frame = 0 

Query: 2   FEMPLMSEMFEISLMSEMSITSKMSEMP-MSEMFEISLMSEMSEMSLMSKMSEMSTMSQM 61
           FEM LM EMFE S MS MS  S+MSEM  MSEM E+S MSEMSEMS MS+MSEMS MS+M
Sbjct: 26  FEMSLMLEMFERSKMSLMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEM 85

Query: 62  SLIKRRMDQRPADAMDPCAAC 81
           S +    +      M  C  C
Sbjct: 86  SEMSEMSEMSEMSEMSRCLRC 106

[Close]
BLAST of Csor.00g264200 vs. NCBI nr
Match: KAG6603360.1 (hypothetical protein SDJN03_03969, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 9.14e-10
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 1  MFEMPLMSEMFEISLMSEMS---ITSKMSEMP------MSEMFEISLMSEMSEMSLMSKM 60
          MFEM +MSEM E+S+MSEMS   + SKMSEM       MSEM+E+S MSEMSEMS+MSKM
Sbjct: 13 MFEMSIMSEMSEMSVMSEMSEMSVMSKMSEMSEMSMSEMSEMYEMSEMSEMSEMSVMSKM 72

[Close]
BLAST of Csor.00g264200 vs. NCBI nr
Match: KAG6603361.1 (hypothetical protein SDJN03_03970, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 1.16e-09
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 0 

Query: 1   MFEMPLMSEMFEISLMSEMSITSKMSEMPMSEMFEISLMSEMSEMSLMSKMSEMSTMSQM 60
           MFEM +MSEM E+S MSEMS  S MSEM  SEM E+S+MSEMSEMS+MSK+SEMS MS M
Sbjct: 40  MFEMSIMSEMSEMSEMSEMSEMSIMSEM--SEMSEMSVMSEMSEMSVMSKISEMSEMSVM 99

Query: 61  SLI 63
           S++
Sbjct: 100 SVM 100

[Close]
BLAST of Csor.00g264200 vs. NCBI nr
Match: KAG6603363.1 (hypothetical protein SDJN03_03972, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 1.39e-09
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0 

Query: 1  MFEMPLMSEMFEISLMSEMS---ITSKMSEMP------MSEMFEISLMSEMSEMSLMSKM 60
          MFEM ++SEM E+S+MSEMS   + SKMSEM       MSEM+E+S MSEMSEMS+MSKM
Sbjct: 13 MFEMSIISEMSEMSVMSEMSEMSVMSKMSEMSEMSMSEMSEMYEMSEMSEMSEMSVMSKM 72

Query: 61 SEMSTMSQMSLIKR 65
          SE S MS MS + R
Sbjct: 73 SEKSEMSVMSEMSR 86

[Close]
BLAST of Csor.00g264200 vs. NCBI nr
Match: KAG6603335.1 (hypothetical protein SDJN03_03944, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 1.85e-09
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 0 

Query: 3   EMPLMSEMFEISLMSEMSITSKMSEMPMSEMFEISLMSEMSEMSLMSKMSEMSTMSQMSL 62
           EM  MSEM  IS MSEM++ SKMSEM  SEM E+S+MSEMSEMS+MSKMSEMS MS+MS+
Sbjct: 83  EMSEMSEMSVISEMSEMNVMSKMSEM--SEMSEMSVMSEMSEMSVMSKMSEMSEMSKMSV 142

Query: 63  IKR 65
           + +
Sbjct: 143 MSK 143

[Close]
BLAST of Csor.00g264200 vs. ExPASy TrEMBL
Match: A0A6J1EW04 (uncharacterized protein LOC111438534 OS=Cucurbita moschata OX=3662 GN=LOC111438534 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.87e-07
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 3   EMPLMSEMFEISLMSEMSITSKMSEMP-MSEMFEISLMSEMSEMSLMSKMSEMSTMSQMS 62
           EMP M E+ E++LM  MS+ S +S MP MS M E+SLMSEMS MSLM KMSEMS MS+MS
Sbjct: 68  EMPEMHEISEMTLMCMMSVMSAVSAMPKMSGMSEMSLMSEMSVMSLMFKMSEMSAMSKMS 127

The following BLAST results are available for this feature:
BLAST of Csor.00g264200 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g264200 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6603405.16.71e-1058.02hypothetical protein SDJN03_04014, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603360.19.14e-1065.71hypothetical protein SDJN03_03969, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603361.11.16e-0969.84hypothetical protein SDJN03_03970, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603363.11.39e-0962.16hypothetical protein SDJN03_03972, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603335.11.85e-0968.25hypothetical protein SDJN03_03944, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g264200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EW043.87e-0764.52uncharacterized protein LOC111438534 OS=Cucurbita moschata OX=3662 GN=LOC1114385... [more]
BLAST of Csor.00g264200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g264200.m01Csor.00g264200.m01mRNA