Csor.00g263610 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g263610
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Peptide deformylase
Location	Csor_Chr11: 12701444 .. 12704765 (-)
RNA-Seq Expression	Csor.00g263610
Synteny	Csor.00g263610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACACTGCTCGATTGCACCTTTCTCTCCCTCATGCTCTTCTTCCAACTTTATCCCGCCGGTCGGCTCTTCCCCCGTTCTCCGCCGGCTGAGCCGTTTTTCCTCAACAGGCGAATTATTATCCAATTCAAGTAAGTTCAGACCTCCGACGACTCTGGTTTACGCGCAGGCCAAACGAGGCTTCTCGACAAAAGAAGACGATGTAGCTTCGGGTAAGCTGAAACCTCGAATATCGTTCGCAACTTGTTTGTGCTAGCTCTTTTCTTCAACTCTTCGCATAGGTTTGTGTAGTTTAGCTAATACGATTGTGGTTTTTTAGCTGCTGATCTTGAATTTGAGGCGCCGCTCCAAATTGTGGAATATCCGGACCCAATACTCAGAGCAAAGAACAAGCGTATTGATTCATTTGATGATAATCTGAAGAAGTTAGTGCAGGAAATGTTTGATGTAATGTACAAGTAAGTTTCTGGATTGGTTATTTCCATCCGTAAGAACTAAATTCACATGTGAGCTCAGAAATTAGCACAGGCTGAGACATGTAAACTCTGAACACAAAATAGGGAGCAAATAGTAGGTTTGAATATAGAAACTCCAAAACGTTAGCATAACTCAATTGGTCGAGATAGTATAACTTGACCAAAAAGTCAGTAGTTCAAATCCCCACCTCCAATATTGTTGATGGAAACTCCGGGTAGGACGGCTAAAGTCGGTACTAGACTGAAGCATCTTTATGGTTAAATAAGTTGAATATGTTCATGGTCAGGTGATCAATGATAGTTCAAGTTCTTGTTACTATGCATCAGTGATGATAATGTAACTTGACTGAAAGGTCAGTAGTTCAAATCCCCACCTCAGATATTGTTGACGAAAACTCCGGGTAGGATGGCTGAAGTCGGTACTAGACCGAAGCAACTAAGTAGGCTAGGACATATTAAATCTTTATAGTTAAATAAGTTGAATCTGTTCATGGTCAGGTGATCAATGATAGCTCAAGTTCTTGTTACTATGCATCAATGATGATAACTCAATTGGTCGAGATACTATAACTTGACCAAATGTCAGTAGTTCAAATCCCCATCACAGATATTGTTGATGGAAGTTCCGGGTAGGATGGCTAAAGTCGGTACTAGACTGAAGCAACTAAGTAGGCTAGGACATATTAAATCTTTATAGTTAAATAAGTTGAATCTGTAGGTGATCAATGATAGTTCAAGTTCTTGTTACTATGGATCAATGATGATAACTCAATTGGTCGAGATACTGTAACTTGACCAAAATGTCAGTAGTTCAAATTCCCACCTCAGATATTCTTGACGGAAACTCCGAGTAGGACGGCTAATGTCGATACTAGACGGAAGCAACTAAATAGGCTAGGACATCTTTATAGTTAAATAAGTTGAATCTGTTCATGGTCAGGTGATCAATGATAGTTCAAGTTCTTGTTACTATGCATCAATGATGAGTTCTGAGTTAGGGCCATTATAAACTTGGTATTTACAGGAAAGTGAACAAAACTTGTTGGCTTCATTGTCTACAGAACTGATGGCATTGGGCTCTCAGCTCCTCAAGTGGGAGTCAATGTTCAACTGATGGTGTTCAATCCCGTCGGTGAACGCGGTGAAGGGGAGGAAATTGTTCTTGTGAACCCTAAAGTATACAGATATTCCAAGAAAACTGTACTCTTTAATGAAGGTTGCCTATCATTCCCCAGGATATATGCTGATGTACAGGTACTGTTGAATACTGGTTCTTGTCTCATGCCTACTTTCTAGTTTAGTGTTCATTAAGGATGGTGTTGCATAGCCTTTTCTGAACTTAATATGATGTTTTCTTGGCTAATTTGAATTCCAATTTGCTAAGTATTTAGTATATTTCCAGCCAAAGCCTGCAAAAGATAGATTTGTTCTCGTGTATCGTGTTGATAGCATGTTACCTTGGCTTAAATTCTAAACTTTCAATTCTATCTAATAGATCTTTGACTCTTCGACACATGGGTATGGGCTTATTTGAAAGTGAATGTTCAAGGACTTATGATACAGCTATTAGAAACATTTTAAAGTTTAGGAACATATTAGACACTACTCGATACTTTAGGGACTAAACTTATATTTTAATATGTAATTAATACTAGTTAGGTCAACGAGTTGTTTTTCGAAATTTTAATATAGTTTCTCTAGTTGTGGAATGATGCTTGCTTTTAAGGACACAATTTCTAGCTAACAAATTCTGCTTCTTATTCTTTGAGTTGGGTTTGTGATGAGGCTAGCTCATTCTCTTGTAATTGCAGAGACCAGAATCGGTTAAGATCGATGCACGAGACATCAGTGGTACGAGGTTCATGGTCAACTTGTCAGGGCTTCCTGCAAGAGTGTTCCAGCATGAATTTGATCATTTGCAGGTTTCTTTTTTAATTAATTTAAGCTTAAGTTTTGATCACCATTCAACTCAATTGAATTCAAAAGCTTAAGCTGATGGATTGTGATAAATTTAATTCTATCAATACTTTACTATTTACCACACGCACATTCTTCCTCACGGTGTCTGTTTTCGGTAACGTTACTCAATGGAATTCTAGCAGTGCATGATTAAGTTGGTCGGGATCCGTGTTATAATATCTACCTAGCTCACATTTTCTCTAAGAGTACTGTTAAATTTGCAGGGAGTTTTGTTCTTTGACAGAATGACAGATGAAGTACTTGATACCATTCGCCCTCAGCTACAAGTGAGTGACCTCCTACACATTGTTTCATCTTATTTATGATCCAAAGAAAACCCTTTTTACTATAGGGAGCGACGTATTCTTATTCATGATTAATATCGTTCTGATTGCACCACAATGGGTCGGTTCAATGGTCCATAGAGGGTCTAGAAGGAATGAATTCAAGTCATGATCGTCATCTACTGAATGTTTAACATCCTGAATAGTTAAAAGTGCACGCAAACTAGCCCGAAGTATATGTTCTTAATCGGTCTTCTGGAAAGAAAATTAACATTTATCGGTATGAACAACCTTCTTAAGAAGTGAATATTAGCACAAGAACTCCTACTAGATTGTGGATAGGGTCTGATTCACTCGTGTAAAAGATAATTTGTGGTATACGTCGATGGTGTGTATGCTCTCGTACCGAGAGGTTTATTTTCTTTCGAACTGATTACTTCATAACTTTGAAGATGAATCGAGGTGAAGTTGTTGTTTATTTACTTTTGATGCAGGCCCTAGAAAAGAAGTACGAAGATAGAACTGGATTACCAAGCCCGGAAAGAATAGAGAACCTTAGAACAAGGAAGAAGGTGGCTGCTGGTTTTGGAAAATCATGA

mRNA sequence

ATGGCTTACACTGCTCGATTGCACCTTTCTCTCCCTCATGCTCTTCTTCCAACTTTATCCCGCCGACCTCCGACGACTCTGGTTTACGCGCAGGCCAAACGAGGCTTCTCGACAAAAGAAGACGATGTAGCTTCGGCTGCTGATCTTGAATTTGAGGCGCCGCTCCAAATTGTGGAATATCCGGACCCAATACTCAGAGCAAAGAACAAGCGTATTGATTCATTTGATGATAATCTGAAGAAGTTAGTGCAGGAAATGTTTGATGTAATGTACAAAACTGATGGCATTGGGCTCTCAGCTCCTCAAGTGGGAGTCAATGTTCAACTGATGGTGTTCAATCCCGTCGGTGAACGCGGTGAAGGGGAGGAAATTGTTCTTGTGAACCCTAAAGTATACAGATATTCCAAGAAAACTGTACTCTTTAATGAAGGTTGCCTATCATTCCCCAGGATATATGCTGATGTACAGAGACCAGAATCGGTTAAGATCGATGCACGAGACATCAGTGGTACGAGGTTCATGGTCAACTTGTCAGGGCTTCCTGCAAGAGTGTTCCAGCATGAATTTGATCATTTGCAGGGAGTTTTGTTCTTTGACAGAATGACAGATGAAGTACTTGATACCATTCGCCCTCAGCTACAAGCCCTAGAAAAGAAGTACGAAGATAGAACTGGATTACCAAGCCCGGAAAGAATAGAGAACCTTAGAACAAGGAAGAAGGTGGCTGCTGGTTTTGGAAAATCATGA

Coding sequence (CDS)

ATGGCTTACACTGCTCGATTGCACCTTTCTCTCCCTCATGCTCTTCTTCCAACTTTATCCCGCCGACCTCCGACGACTCTGGTTTACGCGCAGGCCAAACGAGGCTTCTCGACAAAAGAAGACGATGTAGCTTCGGCTGCTGATCTTGAATTTGAGGCGCCGCTCCAAATTGTGGAATATCCGGACCCAATACTCAGAGCAAAGAACAAGCGTATTGATTCATTTGATGATAATCTGAAGAAGTTAGTGCAGGAAATGTTTGATGTAATGTACAAAACTGATGGCATTGGGCTCTCAGCTCCTCAAGTGGGAGTCAATGTTCAACTGATGGTGTTCAATCCCGTCGGTGAACGCGGTGAAGGGGAGGAAATTGTTCTTGTGAACCCTAAAGTATACAGATATTCCAAGAAAACTGTACTCTTTAATGAAGGTTGCCTATCATTCCCCAGGATATATGCTGATGTACAGAGACCAGAATCGGTTAAGATCGATGCACGAGACATCAGTGGTACGAGGTTCATGGTCAACTTGTCAGGGCTTCCTGCAAGAGTGTTCCAGCATGAATTTGATCATTTGCAGGGAGTTTTGTTCTTTGACAGAATGACAGATGAAGTACTTGATACCATTCGCCCTCAGCTACAAGCCCTAGAAAAGAAGTACGAAGATAGAACTGGATTACCAAGCCCGGAAAGAATAGAGAACCTTAGAACAAGGAAGAAGGTGGCTGCTGGTTTTGGAAAATCATGA

Protein sequence

MAYTARLHLSLPHALLPTLSRRPPTTLVYAQAKRGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYADVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQLQALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS

Homology

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BLAST of Csor.00g263610 vs. ExPASy Swiss-Prot
Match: Q9FV54 (Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1B PE=2 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 2.2e-94
Identity = 175/250 (70.00%), Postives = 203/250 (81.20%), Query Frame = 0


Query: 1   MAYTARLHLSLPHALLPTLSRRPPTTLVYAQAKRGFS--TKEDDVASAADLEFEAPLQIV 60
           ++Y+   + S         S +PP   VYAQA+R  S  TK D++A+ ADL F  PL+IV
Sbjct: 31  ISYSLHRYKSANCLFFSASSNKPPKLAVYAQARRVLSSKTKGDEIATPADLSFVVPLKIV 90

Query: 61  EYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGER 120
           EYPDPILRAKNKRID+FD NLKKLV EMFD+MYKTDGIGLSAPQVG+NVQLMVFN  GER
Sbjct: 91  EYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNAAGER 150

Query: 121 GEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYADVQRPESVKIDARDISGTRFMVNLS 180
           GEGEEIVLVNP+V RYS++ + + EGCLSFP I+ DV+RPESVK+DA+DI+GTRF ++LS
Sbjct: 151 GEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFEISLS 210

Query: 181 GLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQLQALEKKYEDRTGLPSPERIENLRTR 240
            LPARVFQHEFDHLQGVLFFD+MTDEVLDTIR +L ALEKKYEDRTGLP+PE I N R  
Sbjct: 211 ALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVALEKKYEDRTGLPTPESI-NTRKI 270

Query: 241 KKVAAGFGKS 249
           KK A GFGKS
Sbjct: 271 KKAAVGFGKS 279

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BLAST of Csor.00g263610 vs. ExPASy Swiss-Prot
Match: Q9FUZ2 (Peptide deformylase 1B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PDF1B PE=1 SV=2)

HSP 1 Score: 333.6 bits (854), Expect = 1.9e-90
Identity = 166/231 (71.86%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 18  TLSRRPP-TTLVYAQAKRGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFD 77
           T++R  P T+ V A+ KR  S K+D VASA D++FE PL+IVEYPDPILRAKNKRID FD
Sbjct: 44  TVNRTSPLTSSVRAEVKR-VSRKDDKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFD 103

Query: 78  DNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSK 137
           +NLK LV  MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNPK+ +YS 
Sbjct: 104 ENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSD 163

Query: 138 KTVLFNEGCLSFPRIYADVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVL 197
           K V F+EGCLSFP IYA+V RP+SVKIDARDI+G RF ++LS LPAR+FQHE+DHL+GVL
Sbjct: 164 KLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVL 223

Query: 198 FFDRMTDEVLDTIRPQLQALEKKYEDRTGLPSPERIENLRTRKKVAAGFGK 248
           FFDRMTD+VLD+IR +L+ALEKKYE++TGLPSPER+E  R ++K   GFGK
Sbjct: 224 FFDRMTDQVLDSIREELEALEKKYEEKTGLPSPERVE-ARQKRKAGVGFGK 272

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BLAST of Csor.00g263610 vs. ExPASy Swiss-Prot
Match: Q5VNN5 (Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PDF1B PE=2 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 3.7e-81
Identity = 146/221 (66.06%), Postives = 183/221 (82.81%), Query Frame = 0


Query: 27  LVYAQAKRGFST--------KEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFDDN 86
           L  A+A+RGF +        +++D A+AADL+FE PL++V+YPDPILRA+NKRI++FDDN
Sbjct: 42  LAAARARRGFGSAVATAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNKRINTFDDN 101

Query: 87  LKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKT 146
           L+ L  EMFDVMYKTDGIGLSAPQVGVNVQLMVFNP G +GEGEEIVLVNP VY+ SK+ 
Sbjct: 102 LRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRL 161

Query: 147 VLFNEGCLSFPRIYADVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFF 206
           +++ EGCLSFP IYA+V RP++VKIDA+D++G +  V LSGL ARVFQHEFDHLQG+LFF
Sbjct: 162 LVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFF 221

Query: 207 DRMTDEVLDTIRPQLQALEKKYEDRTGLPSPERIENLRTRK 240
           DRM+ +VL+++R  L+ LEKKYE+ TGL SPE IEN + RK
Sbjct: 222 DRMSLDVLESVREGLKDLEKKYEESTGLVSPESIENYKGRK 262

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BLAST of Csor.00g263610 vs. ExPASy Swiss-Prot
Match: Q7UHZ5 (Peptide deformylase OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) OX=243090 GN=def PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-34
Identity = 72/175 (41.14%), Postives = 105/175 (60.00%), Query Frame = 0


Query: 54  PLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFN 113
           PL I+ +P P LR  ++ I   D  LK +  EM D+MY+ DG+GL+A QV + +++ V N
Sbjct: 2   PLSIIHFPHPTLRHVSRPIVRVDAKLKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVAN 61

Query: 114 PVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYADVQRPESVKIDARDISGTRF 173
           P G+R EGE  V++NP++ R  K      EGCLS P +Y  V+RP++V++   D+ G   
Sbjct: 62  PTGKRDEGESWVILNPEIDR-PKGNDTAQEGCLSVPGLYGQVKRPKTVRLRGFDLQGNEI 121

Query: 174 MVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQLQALEKKYEDRTGLPS 229
              L G  ARV QHE DHL G++FFDR+ +E L  +   L+  +  YE + G  S
Sbjct: 122 NQVLDGFMARVVQHEVDHLDGIMFFDRIGEEGLRDLEGHLEEFKTDYESKQGTGS 175

[Close]

BLAST of Csor.00g263610 vs. ExPASy Swiss-Prot
Match: Q7NIF5 (Peptide deformylase 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=def2 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.3e-33
Identity = 71/160 (44.38%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 54  PLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFN 113
           PL I    D +LR  +K+I   +D ++KL Q+M   MY  DGIGL+APQVGVN +++V +
Sbjct: 16  PLAIHTLGDRVLRQGSKQISGINDEVRKLAQQMLQTMYSADGIGLAAPQVGVNKRMIVVD 75

Query: 114 PVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYADVQRPESVKIDARDISGTRF 173
              E      +VL+NP + ++S    +  EGCLS P IYADV+RPE V    RD++G   
Sbjct: 76  IDPENAARPPLVLINPLIKQFSSDLAVDQEGCLSVPSIYADVRRPERVVATYRDLNGRPV 135

Query: 174 MVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 214
            +  +GL AR  QHE DHL GVLF DR+ +++   + PQL
Sbjct: 136 TLEATGLLARCIQHEIDHLDGVLFVDRVENQI--ALAPQL 173

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BLAST of Csor.00g263610 vs. NCBI nr
Match: KAG6588954.1 (Peptide deformylase 1B, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 493 bits (1268), Expect = 1.32e-175
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MAYTARLHLSLPHALLPTLSRRPPTTLVYAQAKRGFSTKEDDVASAADLEFEAPLQIVEY 60
           MAYTARLHLSLPHALLPTLSRRPPTTLVYAQAKRGFSTKEDDVASAADLEFEAPLQIVEY
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRPPTTLVYAQAKRGFSTKEDDVASAADLEFEAPLQIVEY 60

Query: 61  PDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGE 120
           PDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGE
Sbjct: 61  PDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGE 120

Query: 121 GEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYADVQRPESVKIDARDISGTRFMVNLSGL 180
           GEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYADVQRPESVKIDARDISGTRFMVNLSGL
Sbjct: 121 GEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYADVQRPESVKIDARDISGTRFMVNLSGL 180

Query: 181 PARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQLQALEKKYEDRTGLPSPERIENLRTRKK 240
           PARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQLQALEKKYEDRTGLPSPERIENLRTRKK
Sbjct: 181 PARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQLQALEKKYEDRTGLPSPERIENLRTRKK 240

Query: 241 VAAGFGKS 248
           VAAGFGKS
Sbjct: 241 VAAGFGKS 248

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BLAST of Csor.00g263610 vs. NCBI nr
Match: XP_022989167.1 (peptide deformylase 1B, chloroplastic [Cucurbita maxima])

HSP 1 Score: 475 bits (1223), Expect = 2.56e-168
Identity = 245/275 (89.09%), Postives = 248/275 (90.18%), Query Frame = 0


Query: 1   MAYTARLHLSLPHALLPTLSRR---------------------------PPTTLVYAQAK 60
           MAYTARLH+SLPHALLPTLSRR                           PPTTLVYAQAK
Sbjct: 1   MAYTARLHVSLPHALLPTLSRRSALPAVLRRLSRFSSTGRLLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFSTKEDDVAS+ADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKT+LFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTILFNEGCLSFPRIYA 180

Query: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240
           DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 248
           QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Csor.00g263610 vs. NCBI nr
Match: XP_022928203.1 (peptide deformylase 1B, chloroplastic [Cucurbita moschata])

HSP 1 Score: 474 bits (1221), Expect = 5.17e-168
Identity = 246/275 (89.45%), Postives = 247/275 (89.82%), Query Frame = 0


Query: 1   MAYTARLHLSLPHALLPTLSRR---------------------------PPTTLVYAQAK 60
           MAYTARLHLSLPHALLPTLSRR                           PPTTLVYAQAK
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRSALPAVLRRLSRFSSTGELLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFSTKEDDVAS+ADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPSIYA 180

Query: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240
           DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 248
           QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Csor.00g263610 vs. NCBI nr
Match: XP_023530509.1 (peptide deformylase 1B, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 473 bits (1218), Expect = 1.48e-167
Identity = 246/275 (89.45%), Postives = 247/275 (89.82%), Query Frame = 0


Query: 1   MAYTARLHLSLPHALLPTLSRR---------------------------PPTTLVYAQAK 60
           MAYTARLHLSLPHALLPTLSRR                           PPTTLVYAQAK
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRSALPTVLRRLSRFSSTGELLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFSTKEDDVAS+ADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180

Query: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240
           DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 248
           QALEKKYEDRTGL SPERIENLRTRKKVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLRSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Csor.00g263610 vs. NCBI nr
Match: XP_022152139.1 (peptide deformylase 1B, chloroplastic [Momordica charantia])

HSP 1 Score: 440 bits (1132), Expect = 2.02e-154
Identity = 226/273 (82.78%), Postives = 236/273 (86.45%), Query Frame = 0


Query: 1   MAYTARLHLSLPHALLPTLSRR---------------------------PPTTLVYAQAK 60
           MAYTARLHLSL HALLP   RR                           PP+TLVYAQAK
Sbjct: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60

Query: 61  RGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFS KEDD A +ADLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSAKEDDAALSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V+RYSKKTVLFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180

Query: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240
           DV+RPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQG+LFFDRMTDEVLDTIR QL
Sbjct: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240

Query: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFG 246
           QALEKKYE+RTGLPSPERIEN RT+KKVAAG+G
Sbjct: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 273

[Close]

BLAST of Csor.00g263610 vs. ExPASy TrEMBL
Match: A0A6J1JF23 (Peptide deformylase OS=Cucurbita maxima OX=3661 GN=LOC111486320 PE=3 SV=1)

HSP 1 Score: 475 bits (1223), Expect = 1.24e-168
Identity = 245/275 (89.09%), Postives = 248/275 (90.18%), Query Frame = 0


Query: 1   MAYTARLHLSLPHALLPTLSRR---------------------------PPTTLVYAQAK 60
           MAYTARLH+SLPHALLPTLSRR                           PPTTLVYAQAK
Sbjct: 1   MAYTARLHVSLPHALLPTLSRRSALPAVLRRLSRFSSTGRLLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFSTKEDDVAS+ADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKT+LFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTILFNEGCLSFPRIYA 180

Query: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240
           DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 248
           QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Csor.00g263610 vs. ExPASy TrEMBL
Match: A0A6J1EN89 (Peptide deformylase OS=Cucurbita moschata OX=3662 GN=LOC111435101 PE=3 SV=1)

HSP 1 Score: 474 bits (1221), Expect = 2.50e-168
Identity = 246/275 (89.45%), Postives = 247/275 (89.82%), Query Frame = 0


Query: 1   MAYTARLHLSLPHALLPTLSRR---------------------------PPTTLVYAQAK 60
           MAYTARLHLSLPHALLPTLSRR                           PPTTLVYAQAK
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRSALPAVLRRLSRFSSTGELLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFSTKEDDVAS+ADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPSIYA 180

Query: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240
           DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 248
           QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Csor.00g263610 vs. ExPASy TrEMBL
Match: A0A6J1DF55 (Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111019929 PE=3 SV=1)

HSP 1 Score: 440 bits (1132), Expect = 9.80e-155
Identity = 226/273 (82.78%), Postives = 236/273 (86.45%), Query Frame = 0


Query: 1   MAYTARLHLSLPHALLPTLSRR---------------------------PPTTLVYAQAK 60
           MAYTARLHLSL HALLP   RR                           PP+TLVYAQAK
Sbjct: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60

Query: 61  RGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFS KEDD A +ADLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSAKEDDAALSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V+RYSKKTVLFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180

Query: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240
           DV+RPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQG+LFFDRMTDEVLDTIR QL
Sbjct: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240

Query: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFG 246
           QALEKKYE+RTGLPSPERIEN RT+KKVAAG+G
Sbjct: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 273

[Close]

BLAST of Csor.00g263610 vs. ExPASy TrEMBL
Match: A0A1S3B8C2 (Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103487104 PE=3 SV=1)

HSP 1 Score: 431 bits (1107), Expect = 5.46e-151
Identity = 224/275 (81.45%), Postives = 234/275 (85.09%), Query Frame = 0


Query: 1   MAYTARLHLSLPHALLPTLSR---------------------------RPPTTLVYAQAK 60
           MAYT RLH+SLP ALLPT+S                            R P+TLVYAQAK
Sbjct: 1   MAYTTRLHISLPRALLPTVSCWLSPPVVFRRLSGFSSTCTLISHSSKFRAPSTLVYAQAK 60

Query: 61  RGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGF  KEDDVAS+ DLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFYAKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTV FNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVPFNEGCLSFPMIYA 180

Query: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240
           DV+RPES+KIDARDI GTRFMVNLSGL ARVFQHEFDHLQG+LFFDRMTDEVL+TIRPQL
Sbjct: 181 DVERPESIKIDARDIRGTRFMVNLSGLSARVFQHEFDHLQGILFFDRMTDEVLETIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 248
           QALEKKYEDRTGLPSPERIEN R  +KVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENFR--RKVAAGFGKS 273

[Close]

BLAST of Csor.00g263610 vs. ExPASy TrEMBL
Match: A0A0A0LG66 (Peptide deformylase OS=Cucumis sativus OX=3659 GN=Csa_3G837630 PE=3 SV=1)

HSP 1 Score: 429 bits (1103), Expect = 2.22e-150
Identity = 225/275 (81.82%), Postives = 234/275 (85.09%), Query Frame = 0


Query: 1   MAYTARLHLSLPHALLPTLS---------RR------------------PPTTLVYAQAK 60
           MAY  RLH+SLPHALLPT+S         RR                   P+TLVYAQAK
Sbjct: 1   MAYATRLHISLPHALLPTVSCWLSPPAVFRRLSGFSSTCKLFSHSSKFKAPSTLVYAQAK 60

Query: 61  RGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFS KEDDVAS+ DLEFEAPL+IVEYPDPILRAKNKRI SFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFSAKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIGSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFN VGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNSVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPMIYA 180

Query: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240
           DV+RPES+KIDARDISGTRFMVNLSGL ARVFQHEFDHLQG LFFDRMTDEVL+TIRPQL
Sbjct: 181 DVERPESIKIDARDISGTRFMVNLSGLSARVFQHEFDHLQGTLFFDRMTDEVLETIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 248
           QALEKKYEDRTGLPSPERIEN R  +KV AGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENFR--RKVGAGFGKS 273

[Close]

BLAST of Csor.00g263610 vs. TAIR 10
Match: AT5G14660.1 (peptide deformylase 1B )

HSP 1 Score: 333.6 bits (854), Expect = 1.4e-91
Identity = 166/231 (71.86%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 18  TLSRRPP-TTLVYAQAKRGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFD 77
           T++R  P T+ V A+ KR  S K+D VASA D++FE PL+IVEYPDPILRAKNKRID FD
Sbjct: 44  TVNRTSPLTSSVRAEVKR-VSRKDDKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFD 103

Query: 78  DNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSK 137
           +NLK LV  MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNPK+ +YS 
Sbjct: 104 ENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSD 163

Query: 138 KTVLFNEGCLSFPRIYADVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVL 197
           K V F+EGCLSFP IYA+V RP+SVKIDARDI+G RF ++LS LPAR+FQHE+DHL+GVL
Sbjct: 164 KLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVL 223

Query: 198 FFDRMTDEVLDTIRPQLQALEKKYEDRTGLPSPERIENLRTRKKVAAGFGK 248
           FFDRMTD+VLD+IR +L+ALEKKYE++TGLPSPER+E  R ++K   GFGK
Sbjct: 224 FFDRMTDQVLDSIREELEALEKKYEEKTGLPSPERVE-ARQKRKAGVGFGK 272

[Close]

BLAST of Csor.00g263610 vs. TAIR 10
Match: AT5G14660.2 (peptide deformylase 1B )

HSP 1 Score: 333.6 bits (854), Expect = 1.4e-91
Identity = 166/231 (71.86%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 18  TLSRRPP-TTLVYAQAKRGFSTKEDDVASAADLEFEAPLQIVEYPDPILRAKNKRIDSFD 77
           T++R  P T+ V A+ KR  S K+D VASA D++FE PL+IVEYPDPILRAKNKRID FD
Sbjct: 44  TVNRTSPLTSSVRAEVKR-VSRKDDKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFD 103

Query: 78  DNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSK 137
           +NLK LV  MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNPK+ +YS 
Sbjct: 104 ENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSD 163

Query: 138 KTVLFNEGCLSFPRIYADVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVL 197
           K V F+EGCLSFP IYA+V RP+SVKIDARDI+G RF ++LS LPAR+FQHE+DHL+GVL
Sbjct: 164 KLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVL 223

Query: 198 FFDRMTDEVLDTIRPQLQALEKKYEDRTGLPSPERIENLRTRKKVAAGFGK 248
           FFDRMTD+VLD+IR +L+ALEKKYE++TGLPSPER+E  R ++K   GFGK
Sbjct: 224 FFDRMTDQVLDSIREELEALEKKYEEKTGLPSPERVE-ARQKRKAGVGFGK 272

[Close]

BLAST of Csor.00g263610 vs. TAIR 10
Match: AT1G15390.1 (peptide deformylase 1A )

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-22
Identity = 59/171 (34.50%), Postives = 87/171 (50.88%), Query Frame = 0


Query: 56  QIVEYPDPILRAKNKRIDSFD---DNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVF 115
           +IV   DP+L  K + +D  +   + ++K++ +M  VM    G+GL+APQ+GV ++++V 
Sbjct: 82  EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 141

Query: 116 NP--------------VGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYADVQRP 175
                             ER   + +V+VNP +   S K  LF EGCLS     A V+R 
Sbjct: 142 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 201

Query: 176 ESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTI 210
             V +   D  G R  VN SG  AR+ QHE DHL G L+ D+M      T+
Sbjct: 202 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTV 252

The following BLAST results are available for this feature:

BLAST of Csor.00g263610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FV54	2.2e-94	70.00	Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1B P...	[more]
Q9FUZ2	1.9e-90	71.86	Peptide deformylase 1B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3...	[more]
Q5VNN5	3.7e-81	66.06	Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q7UHZ5	2.6e-34	41.14	Peptide deformylase OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / ...	[more]
Q7NIF5	8.3e-33	44.38	Peptide deformylase 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX...	[more]

BLAST of Csor.00g263610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588954.1	1.32e-175	100.00	Peptide deformylase 1B, chloroplastic, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022989167.1	2.56e-168	89.09	peptide deformylase 1B, chloroplastic [Cucurbita maxima]	[more]
XP_022928203.1	5.17e-168	89.45	peptide deformylase 1B, chloroplastic [Cucurbita moschata]	[more]
XP_023530509.1	1.48e-167	89.45	peptide deformylase 1B, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022152139.1	2.02e-154	82.78	peptide deformylase 1B, chloroplastic [Momordica charantia]	[more]

BLAST of Csor.00g263610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JF23	1.24e-168	89.09	Peptide deformylase OS=Cucurbita maxima OX=3661 GN=LOC111486320 PE=3 SV=1	[more]
A0A6J1EN89	2.50e-168	89.45	Peptide deformylase OS=Cucurbita moschata OX=3662 GN=LOC111435101 PE=3 SV=1	[more]
A0A6J1DF55	9.80e-155	82.78	Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111019929 PE=3 SV=1	[more]
A0A1S3B8C2	5.46e-151	81.45	Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103487104 PE=3 SV=1	[more]
A0A0A0LG66	2.22e-150	81.82	Peptide deformylase OS=Cucumis sativus OX=3659 GN=Csa_3G837630 PE=3 SV=1	[more]

BLAST of Csor.00g263610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14660.1	1.4e-91	71.86	peptide deformylase 1B	[more]
AT5G14660.2	1.4e-91	71.86	peptide deformylase 1B	[more]
AT1G15390.1	3.0e-22	34.50	peptide deformylase 1A	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 65..85
None	No IPR available	PANTHER	PTHR10458:SF2	PEPTIDE DEFORMYLASE, MITOCHONDRIAL	coord: 27..221
IPR023635	Peptide deformylase	PRINTS	PR01576	PDEFORMYLASE	coord: 143..154 score: 57.1 coord: 84..113 score: 40.68 coord: 155..173 score: 32.94 coord: 174..203 score: 47.9
IPR023635	Peptide deformylase	TIGRFAM	TIGR00079	TIGR00079	coord: 55..204 e-value: 3.3E-47 score: 158.0
IPR023635	Peptide deformylase	PFAM	PF01327	Pep_deformylase	coord: 56..203 e-value: 9.3E-50 score: 168.3
IPR023635	Peptide deformylase	PANTHER	PTHR10458	PEPTIDE DEFORMYLASE	coord: 27..221
IPR023635	Peptide deformylase	HAMAP	MF_00163	Pep_deformylase	coord: 53..216 score: 27.75799
IPR023635	Peptide deformylase	CDD	cd00487	Pep_deformylase	coord: 57..197 e-value: 2.48571E-64 score: 195.012
IPR036821	Peptide deformylase superfamily	GENE3D	3.90.45.10	Peptide deformylase	coord: 39..231 e-value: 2.2E-67 score: 227.6
IPR036821	Peptide deformylase superfamily	SUPERFAMILY	56420	Peptide deformylase	coord: 54..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g263610.m01	Csor.00g263610.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018206	peptidyl-methionine modification
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0042586	peptide deformylase activity