Csor.00g262150 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g262150
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr11: 11576554 .. 11576811 (-)
RNA-Seq Expression	Csor.00g262150
Synteny	Csor.00g262150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATCGAGCCATCTCTCTCGATTTTCATCAAATGTACCTTAATCTCAGCCAACCCACATCTCAAATCCATCTCTACAGAGCACTCACGACGCAGAAGATCACCTTCTTTTCTCCGTTGCCGCCCCCACAATCTCAACCCTCGATTGGTTCGAGCACTGCCGCACATCATCGAGGGCCAGTAAGGCATCAACACCGACGGCAGAAGTCCGATGAGGCTGTTCTACTTCTTCTACCTCCATTGAGAAGTTGGTAG

mRNA sequence

ATGGAAAATCGAGCCATCTCTCTCGATTTTCATCAAATGTACCTTAATCTCAGCCAACCCACATCTCAAATCCATCTCTACAGAGCACTCACGACGCAGAAGATCACCTTCTTTTCTCCGTTGCCGCCCCCACAATCTCAACCCTCGATTGGTTCGAGCACTGCCGCACATCATCGAGGGCCAGTAAGGCATCAACACCGACGGCAGAAGTCCGATGAGGCTGTTCTACTTCTTCTACCTCCATTGAGAAGTTGGTAG

Coding sequence (CDS)

ATGGAAAATCGAGCCATCTCTCTCGATTTTCATCAAATGTACCTTAATCTCAGCCAACCCACATCTCAAATCCATCTCTACAGAGCACTCACGACGCAGAAGATCACCTTCTTTTCTCCGTTGCCGCCCCCACAATCTCAACCCTCGATTGGTTCGAGCACTGCCGCACATCATCGAGGGCCAGTAAGGCATCAACACCGACGGCAGAAGTCCGATGAGGCTGTTCTACTTCTTCTACCTCCATTGAGAAGTTGGTAG

Protein sequence

MENRAISLDFHQMYLNLSQPTSQIHLYRALTTQKITFFSPLPPPQSQPSIGSSTAAHHRGPVRHQHRRQKSDEAVLLLLPPLRSW

Homology

[Close]

BLAST of Csor.00g262150 vs. NCBI nr
Match: KAG6588807.1 (hypothetical protein SDJN03_17372, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176 bits (445), Expect = 1.99e-55
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MENRAISLDFHQMYLNLSQPTSQIHLYRALTTQKITFFSPLPPPQSQPSIGSSTAAHHRG 60
          MENRAISLDFHQMYLNLSQPTSQIHLYRALTTQKITFFSPLPPPQSQPSIGSSTAAHHRG
Sbjct: 1  MENRAISLDFHQMYLNLSQPTSQIHLYRALTTQKITFFSPLPPPQSQPSIGSSTAAHHRG 60

Query: 61 PVRHQHRRQKSDEAVLLLLPPLRSW 85
          PVRHQHRRQKSDEAVLLLLPPLRSW
Sbjct: 61 PVRHQHRRQKSDEAVLLLLPPLRSW 85

The following BLAST results are available for this feature:

BLAST of Csor.00g262150 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g262150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588807.1	1.99e-55	100.00	hypothetical protein SDJN03_17372, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g262150 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g262150 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g262150.m01	Csor.00g262150.m01	mRNA