Csor.00g261860 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g261860
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	exosome complex component RRP42
Location	Csor_Chr11: 11342991 .. 11347875 (+)
RNA-Seq Expression	Csor.00g261860
Synteny	Csor.00g261860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAGAAACCACGTAGGCTCGACTATCCATCCAACAAATTCAAGAGGTACACTACACTCCAACAAGTATAGACTAACCATTGCTAGCATTGGCGAGAAACGTGCTCATCGTAAGCATCGCTAACAATGAGTTTAAGATATTCAAGATCTAGACCTAAACTAAGCACCTTCTAGAAGTACTTCAGACTCGGACTCGTCGAACGAGAAAGCAACCATCTTTGTAGTAGTACTAAGATTTTGTTTGGCATCGTAGGTAATATTTTACCCTCTATATTTTTATTTAATGCAATATTATTAATTATAAAAACAAAAGTACTTTAAAAAAAAAATAATAGACTATATAAATTGACAAATAGAAAAAGCCAATATTAATTAATAGCTTTATTATTTAAAATAAACTAATAATAAATTAATAAATTAATGTTATTTTGCAATTTAAAATCACAATAATCCTATTATTATCAATAGTTTGCCCACTAATATACTTTTGTAATTTATTTTAAATATTATTTTAATTTCTTATTTATTTTTAAAAAATTACTTTAATTTTGTAATTTTTTTTTACAGTACAGTATTTTTGGAATTTGCCAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAGAAAACAAATTAAAAATAAATGATAAACCCTAAACCCATTTTTTGCTGGTAGCCCACTCCACTCTTCCTTCTCCGCCATCTCTACCGCGCGCGCCCTCTCCGCCCTCTCCGCCGGAGCTGTTCGTCGGTCACCCTTTCCTTCTCTCTCTTCCTATCACCCTGCAATTGCGGCCTGCGGATCGCAGGCCCTGTGTTCTTTTGCCGAGATCCGCACACCGGCTCGGCGAACACCGAAGGCCTTGTCGCCGACAAAGCACGAGCAGCGCCGCCGTCCCTCGATGTCAGTAACATCTATCTTCTCTTCTTCTTTAATCTCTAGTTTATGCCAAAACCCCAATGTTCCATCTCAACTTTGTCTAAACCTTGGTCTTCTGGGTTTAATTTCCAGCTGGTTTTGTGTGGTTCACCAGAAGTAGGAATGAAGGGGCTTTCGGTTGGAGAAAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACCGATGGTCGAAGGAGACTAAATTATCGACCCATTTCCGTAGAAACGGATGTGATCTCTCAGGTATAATCAAAACAGAGTAGTATATTTATGCCTTGTTTGCTTGTTCTGTTCTTGCTCTTTATGTGGTTTTATGTCTCAATTCACTTATGTTTAGGCGAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAGGTTATTGCTACTGTCAAGGTATAAATGCGTTGAGCTTCTTTCTCTTTCAATTCTACTCTTCACCAGTTTCTATCCAAAACACTGCAACCGCTCTGTTTTTCGTTTTTGAAACTGTAAACTTGGATTGGTTATGGTGATTACTGCTTTGATATGTTTTAAGTGCAGGCTGAACTTGGAAGGCCTAATGCAATGCAGCCTGATAAAGGGAAGGTTTCCATATTTGTTGATTGCAGCCCGACTGCAGAGCCAACGTTTGAGGTGTGAAATCTTGCTTATTTTTACACGTTTGTTCATTCATGTGTGTAGAAATGCATTAGTGAAAAATAGAATGTTGAGCATCAGAAGCTAATTTTGTATGAAGGTCTTGATATTTAGATTTTCTGACTATGGGCTTGATTTACATTTAGATTTCCATTGATTAATTTGCTGTCTATTCTTGATTAAATTTTGAAATTAGTGCAAGTTGCTAAGAATTCGAGCGTAGTAGGATTTTGATCAATTGGATTAAATAAGAGGCACATTTATCACTAACCAGCATAATCTAACAATTGGATATTGCAAACAAATATACCTTGAAACTTGAAGGATCTTAGCCTTATTTTCAATGATAGTATGGTTCTCATTCTTAGATTATGATTAAATAGGTATGATTATTCCTCCAAACTTTAATGGTTCATGCGCACAGAAATCATACAAGAAAAAAACCCCATTGAAGCAGGCCTCAATGAATTATAGGAACAGACTCCATCCCAAAGAATAACCCAAGCTGATAACTGAGAAAAGAACGATTCGAAGATATCTTTAAAGACGCATTAAATCTCACAACTTTTGACACCTCCTCGACAAACCTCTTGAGCTTTTGAAAATAGTGACAAACAAGCCTGCCACAAGACTCCCCATTGAATAGCAAATGAACAAGCCTGCCCCAGAACTTTTCCTTTATTTTTGAAGTGAGATTTCATCATAACCACCCTTGACATAGAGTGATAGTCCCTATTACTCATGTAATGGCCCTAAAAAACCAGCTCCATAGGGAGTAAGCAAGCTGAAAACCTCACAAATGATGATTAAGATCCTCACGATGGACACACCATTATTGACACAACATTAAGGAAGAATTTCACTTGATGTAATTCTGGGAATTCATTCTGCCAAGTAAAGAAATTCACTTTTTAGGCATTTTCACCTTTCTGGAAAGGGAAAAAGGAGGCCCCTGATTGGACGAAGAGGAACAAAGAGTGATGGGAAAAGACTAATACATTAAGTCTTTAGACATATTAAGAGCCCAAACCCTATGATAGGAGAATAGTGTAAAAAATCCCACTACCTCCAAAGACTTGTGATTAGTGAGAAGAGAAAATCCAGTGACAGTGAAGAGGACGAATTAGAAATCGACAAGATAGAGGCCACTGAGTGTAACCTCTTGTCAGAAAAATAATAAATGTGAATAAATAGATCACAAAGAGAGGCTTAACACCCACCCACCAATCCTCTCCAAAAATAAGTAACTATAGTCATCAAAAGCCTTTTACTAGAGTCTTTTAACCCACTACTTGTTCATTTTAAGTTGAGAACCAATTTCTTTCTTTGAAGGGAAACATATTAGCAAAGGTAGTATAAGTGCATAGTTCTAACATTTAATCAAAGATGAATGAACAAATTAAATAATGGAAAAGAGTTAGGGGATACAATAGATGTTAAATCAATGTTTAAGTGCTAAAACAATAATCTAACAGAAAAGCTATTATAAACGTTTGTGACTTACTATAGAAATCGTTAAACAACTGAACTGGTATCAATGTGAATCACATCAACTTGTGTAGTTTCTTTTCCATATGTGCCTTTGGTGTGCTTGTAATAATTTGGTTTTTCACTGAATATAGGGTAGGGGTGGTGAAGAGTTGGCAACAGAACTCTCAGTTGCCCTTGAGCGATGCCTCTTAGGAGGAAAAAGTGGTGCAGGTTTGACTCATGACTAAAAAAGTAGATTGATAGTATTCACGGTTATGAATCACAAATCTCCACAATGGTATGATATTGTCCACTTTGAGTATAAGCTCTTATGGCTTTGCTTTGGGCTTCTCCAAAAGGTCTTATACCAATGGAGATAGTATTCCTCACTTATAAACTCATGATCGTTCCCTAAATTAGCCCATGTGGGACTCACTCCCAATAATCTTCAACAATCCTCCCCTCGAACAAAGTACACTATAAGCCTCCCCTGAGGCTTATGGAGCTCTCGAATAGCCTCCCCTTAATCGAGGCTCGACTCCTTTCTCTGGAGCCCTCAAACAAAGTACACCCTTTGTTCGACACTTTAGTCACTTTTAACTAAACCTTCGAGGCTCACAATTCTTTGTTCGATATTTGAGGATTCTATCAACATGACTAAGTTTAGAGTATGGCTCTGATACCATGTTATGAATCACGAATCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGACTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCATTCCCTAAATTATCCAACGTGGGACTCACTCCCAATAATCTTCAACATTCACTTCCCTTGTTTTGATCAGGAACTTTTGCCCTTGATTAACAATCGTGCTTTTGTTGCCTCAGGGGCTGGGATTGACCTTTCATCTCTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTTTATATTGAGGGCCTTGTTGTAAGCTCAGACGGCAATCTTCTAGATGCCCTTGGTGCTGCGATTAAGGTACATTTTGATTCTTGAATGTTGTCTACTCTTCTATGTCTGATGTGTTTACTTAAATAACCAGGTTTTGTACTTATTGTTTATACTAGGCTGCATGACCATATAAGCTTTGCTAGTTTGACCAAAGCAATGTACAACAAACATCAGTATCATGTCCGTGTATGGTCTCTGCTTATATCTGTCATTATTTCTGATTGAGCAAGTCACATTTTGCAACTGAAGTCCCTTGAGCCTATATTTTTCTCTTTCGGTTTCGAGATCTACAATAATTTCCTCTTATTTAGGACTCTACCGAATGACTTGAACCCTTCATATTTTAGTAGATCTTTTAATAATCACAGTTGCTATCAAGAATATCTTGCTGGTAGTTAAAGCTGAAACTAATAAACCCTCATCCTCTTCGCAAGGCTGCTTTGAGCAATACAGGCATACCAAAAGTCAATGTTTCTGCAGAAGCGTCCGCCAATGAACAACCCGAAGTTGACGTAAGCGATGAAGAATTTCTACAGTTTGACACATCTGGGGTTCCGGTCATAGTTACATTGACAAAGGTGGGTAGGCACTACATTGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGCTCTGCAATCTCCATATCCGTCAACAGGCACGGTCATGTCTGTGGATTGACCAAACGAGGGGGTGCTGGGGTCGATCCAAGCGTAATCCTTGACATGATTTCCGTGGGCAAACATGTGAGCGAGCAATTACTAAACAAGTTGGATTCGGAGATAGCTGCTGCTGAAGCTGATGAAGAAGAATGA

mRNA sequence

ATGACGAGAAACCACGTAGGCTCGACTATCCATCCAACAAATTCAAGAGGTACACTACACTCCAACAAGTATAGACTAACCATTGCTAGCATTGGCGAGAAACGTGCTCATCGCCCTGTGTTCTTTTGCCGAGATCCGCACACCGGCTCGGCGAACACCGAAGGCCTTGTCGCCGACAAAGCACGAGCAGCGCCGCCGTCCCTCGATCTGGTTTTGTGTGGTTCACCAGAAGTAGGAATGAAGGGGCTTTCGGTTGGAGAAAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACCGATGGTCGAAGGAGACTAAATTATCGACCCATTTCCGTAGAAACGGATGTGATCTCTCAGGCGAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAGGTTATTGCTACTGTCAAGGCTGAACTTGGAAGGCCTAATGCAATGCAGCCTGATAAAGGGAAGGTTTCCATATTTGTTGATTGCAGCCCGACTGCAGAGCCAACGTTTGAGGGTAGGGGTGGTGAAGAGTTGGCAACAGAACTCTCAGTTGCCCTTGAGCGATGCCTCTTAGGAGGAAAAAGTGGTGCAGGGGCTGGGATTGACCTTTCATCTCTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTTTATATTGAGGGCCTTGTTGTAAGCTCAGACGGCAATCTTCTAGATGCCCTTGGTGCTGCGATTAAGGCTGCTTTGAGCAATACAGGCATACCAAAAGTCAATGTTTCTGCAGAAGCGTCCGCCAATGAACAACCCGAAGTTGACGTAAGCGATGAAGAATTTCTACAGTTTGACACATCTGGGGTTCCGGTCATAGTTACATTGACAAAGGTGGGTAGGCACTACATTGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGCTCTGCAATCTCCATATCCGTCAACAGGCACGGTCATGTCTGTGGATTGACCAAACGAGGGGGTGCTGGGGTCGATCCAAGCGTAATCCTTGACATGATTTCCGTGGGCAAACATGTGAGCGAGCAATTACTAAACAAGTTGGATTCGGAGATAGCTGCTGCTGAAGCTGATGAAGAAGAATGA

Coding sequence (CDS)

ATGACGAGAAACCACGTAGGCTCGACTATCCATCCAACAAATTCAAGAGGTACACTACACTCCAACAAGTATAGACTAACCATTGCTAGCATTGGCGAGAAACGTGCTCATCGCCCTGTGTTCTTTTGCCGAGATCCGCACACCGGCTCGGCGAACACCGAAGGCCTTGTCGCCGACAAAGCACGAGCAGCGCCGCCGTCCCTCGATCTGGTTTTGTGTGGTTCACCAGAAGTAGGAATGAAGGGGCTTTCGGTTGGAGAAAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACCGATGGTCGAAGGAGACTAAATTATCGACCCATTTCCGTAGAAACGGATGTGATCTCTCAGGCGAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAGGTTATTGCTACTGTCAAGGCTGAACTTGGAAGGCCTAATGCAATGCAGCCTGATAAAGGGAAGGTTTCCATATTTGTTGATTGCAGCCCGACTGCAGAGCCAACGTTTGAGGGTAGGGGTGGTGAAGAGTTGGCAACAGAACTCTCAGTTGCCCTTGAGCGATGCCTCTTAGGAGGAAAAAGTGGTGCAGGGGCTGGGATTGACCTTTCATCTCTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTTTATATTGAGGGCCTTGTTGTAAGCTCAGACGGCAATCTTCTAGATGCCCTTGGTGCTGCGATTAAGGCTGCTTTGAGCAATACAGGCATACCAAAAGTCAATGTTTCTGCAGAAGCGTCCGCCAATGAACAACCCGAAGTTGACGTAAGCGATGAAGAATTTCTACAGTTTGACACATCTGGGGTTCCGGTCATAGTTACATTGACAAAGGTGGGTAGGCACTACATTGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGCTCTGCAATCTCCATATCCGTCAACAGGCACGGTCATGTCTGTGGATTGACCAAACGAGGGGGTGCTGGGGTCGATCCAAGCGTAATCCTTGACATGATTTCCGTGGGCAAACATGTGAGCGAGCAATTACTAAACAAGTTGGATTCGGAGATAGCTGCTGCTGAAGCTGATGAAGAAGAATGA

Protein sequence

MTRNHVGSTIHPTNSRGTLHSNKYRLTIASIGEKRAHRPVFFCRDPHTGSANTEGLVADKARAAPPSLDLVLCGSPEVGMKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASANEQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE

Homology

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BLAST of Csor.00g261860 vs. ExPASy Swiss-Prot
Match: Q15024 (Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 207.6 bits (527), Expect = 2.4e-52
Identity = 112/279 (40.14%), Postives = 170/279 (60.93%), Query Frame = 0


Query: 83  LSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATVKAE 142
           LS  EK++I  G+ +DLR DGR   +YR + VETDV+S  +GSARV++G T+++  VKAE
Sbjct: 6   LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65

Query: 143 LGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGID 202
           +G P   +P++G +  FVDCS +A P FEGRGG++L TE++  L R +   KS     +D
Sbjct: 66  MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKS----SVD 125

Query: 203 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASANEQP 262
           L +L +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +   ++  
Sbjct: 126 LKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDI 185

Query: 263 EVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGLT 322
           E+     + ++     VP IVTL K+G  ++VDATL+EE+   +++ +SV   G V  + 
Sbjct: 186 ELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMR 245

Query: 323 KRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEA 362
           K G   +DP  I +M+  GK V + L   L S +   E+
Sbjct: 246 KVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 279

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BLAST of Csor.00g261860 vs. ExPASy Swiss-Prot
Match: Q9D0M0 (Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-50
Identity = 112/279 (40.14%), Postives = 167/279 (59.86%), Query Frame = 0


Query: 83  LSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATVKAE 142
           LS  EK++I  G+ +DLR DGR   +YR + VETDV+S  +GSARV++G T+++  VKAE
Sbjct: 6   LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65

Query: 143 LGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGID 202
           +G P   +P++G +  FVDCS  A P FEGRGG++L TE++  L R +   KS     +D
Sbjct: 66  MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKS----SVD 125

Query: 203 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASANEQP 262
           L SL +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +    +  
Sbjct: 126 LRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDI 185

Query: 263 EVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGLT 322
           E+     + ++     VP IVTL K+G  ++VDATL+EE+   +++ +SV   G V  + 
Sbjct: 186 ELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMR 245

Query: 323 KRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEA 362
           K G   +DP  I +M+   K V + L   L S +   E+
Sbjct: 246 KVGKGSLDPESIFEMMESSKRVGKVLHVSLQSLLHKEES 279

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BLAST of Csor.00g261860 vs. ExPASy Swiss-Prot
Match: Q54VM4 (Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 GN=exosc7 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-45
Identity = 118/321 (36.76%), Postives = 169/321 (52.65%), Query Frame = 0


Query: 80  MKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATV 139
           M+ +S  E LFIQ G+  ++R+DGR R++YR  ++ET  I  ANGSARV++  TEV+  V
Sbjct: 1   MQKISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGV 60

Query: 140 KAELGR------PNAMQPDKGKVSIF-VDCSPTAEPTFEGRGGEELATELSVALERCLL- 199
           KAE+         N  Q D  K  +F V+C P+A P FEG+G E L  ELS  LER    
Sbjct: 61  KAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLERLYSH 120

Query: 200 ----------------------------GGKSGAGAGI------DLSSLIVVEGKLCWDL 259
                                        GK     G       D +   +V GK  W L
Sbjct: 121 PNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNCFSIVSGKYYWTL 180

Query: 260 YIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASANEQPEVDVSD--EEFLQFD 319
           Y++ +V+ SDGNL DAL  A ++AL NT IP+  V A     E+   +VSD  E+ L   
Sbjct: 181 YVDAIVLDSDGNLFDALSIACRSALQNTRIPR--VKAIQGEYEEITFEVSDDPEDTLSLS 240

Query: 320 TSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGLTKRGGAGVDPSVIL 357
              VP+ VTLTK+G  +++D TL+EE  M++ +++ VN   ++C + K G  G+DP+ I 
Sbjct: 241 IDNVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLDPTTIN 300

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BLAST of Csor.00g261860 vs. ExPASy Swiss-Prot
Match: O26778 (Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rrp42 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-33
Identity = 86/257 (33.46%), Postives = 134/257 (52.14%), Query Frame = 0


Query: 100 RTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNAMQPDKGKVSIF 159
           R DGR    +R IS+ET VIS+A GS+RV++G T++I  VK ++G P    P+ G +   
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84

Query: 160 VDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYI 219
            +  P A PTFE    +E + ELS  ++RC+   +      IDL  L ++EG   W L++
Sbjct: 85  SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRM-----IDLEKLCIIEGSKVWMLFL 144

Query: 220 EGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASANEQPEVDVSDEEFLQFDTSGV 279
           +  ++  DGNL DA   A  AAL +T IP   V       E  EV ++ E+      +  
Sbjct: 145 DLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV-------EDGEVVINREKMQPLPVNRK 204

Query: 280 PVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGLTKRGGAGVDPSVILDMIS 339
            ++ T  K+G   ++D +LEEE  +++ ISI V   G +C + K G   +    +L  +S
Sbjct: 205 ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVS 264

Query: 340 VGKHVSEQLLNKLDSEI 357
           +      QL+  LD  +
Sbjct: 265 IAVEKVPQLIEYLDKSM 269

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BLAST of Csor.00g261860 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.2e-33
Identity = 90/258 (34.88%), Postives = 142/258 (55.04%), Query Frame = 0


Query: 100 RTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNAMQPDKGKVSIF 159
           R DGR    +RPI V   VIS+ANGSA VR+G T+++  VK E+GRP    P++G +++ 
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 160 VDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYI 219
            +  P A+P+FE    +E A ELS  ++R +   +      IDL  L + EG+ CW  ++
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEM-----IDLEELCIEEGEHCWVTFV 142

Query: 220 EGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASANEQPEVDVSDEEFLQFDTSGV 279
           +  V+  DGNL DA      +ALS T +PK  V  +       EV+V +E+      +  
Sbjct: 143 DIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDD-------EVEVMEEDTEPLAINDF 202

Query: 280 PVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGLTKRGGAGVDPSVIL-DMI 339
           P+ VT+ KVG + +VD  LEEE  M + ++++V   G VC + K G  G  P  +L D I
Sbjct: 203 PISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDFPEHLLEDAI 262

Query: 340 SVGKHVSEQLLNKLDSEI 357
            +    +E++   + +++
Sbjct: 263 DLATKKAEEVRRTVKAQL 267

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BLAST of Csor.00g261860 vs. NCBI nr
Match: KAG6588778.1 (Exosome complex component RRP42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 709 bits (1831), Expect = 1.74e-257
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0


Query: 1   MTRNHVGSTIHPTNSRGTLHSNKYRLTIASIGEKRAHRPVFFCRDPHTGSANTEGLVADK 60
           MTRNHVGSTIHPTNSRGTLHSNKYRLTIASIGEKRAHRPVFFCRDPHTGSANTEGLVADK
Sbjct: 1   MTRNHVGSTIHPTNSRGTLHSNKYRLTIASIGEKRAHRPVFFCRDPHTGSANTEGLVADK 60

Query: 61  ARAAPPSLDLVLCGSPEVGMKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVIS 120
           ARAAPPSLDLVLCGSPEVGMKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVIS
Sbjct: 61  ARAAPPSLDLVLCGSPEVGMKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVIS 120

Query: 121 QANGSARVRMGGTEVIATVKAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELAT 180
           QANGSARVRMGGTEVIATVKAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELAT
Sbjct: 121 QANGSARVRMGGTEVIATVKAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELAT 180

Query: 181 ELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKA 240
           ELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKA
Sbjct: 181 ELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKA 240

Query: 241 ALSNTGIPKVNVSAEASANEQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEE 300
           ALSNTGIPKVNVSAEASANEQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEE
Sbjct: 241 ALSNTGIPKVNVSAEASANEQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEE 300

Query: 301 ESQMSSAISISVNRHGHVCGLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAE 360
           ESQMSSAISISVNRHGHVCGLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAE
Sbjct: 301 ESQMSSAISISVNRHGHVCGLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAE 360

Query: 361 ADEEE 365
           ADEEE
Sbjct: 361 ADEEE 365

[Close]

BLAST of Csor.00g261860 vs. NCBI nr
Match: XP_023529361.1 (exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exosome complex component RRP42 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 547 bits (1410), Expect = 1.30e-194
Identity = 285/286 (99.65%), Postives = 285/286 (99.65%), Query Frame = 0


Query: 80  MKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATV 139
           MKGLSVGEKLFIQGGIAQDLRTDGRRRL YRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 140 KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 199
           KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 200 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 259
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 260 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 319
           EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 320 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 365
           GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Csor.00g261860 vs. NCBI nr
Match: XP_022927940.1 (exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome complex component RRP42 [Cucurbita moschata])

HSP 1 Score: 546 bits (1406), Expect = 5.27e-194
Identity = 284/286 (99.30%), Postives = 284/286 (99.30%), Query Frame = 0


Query: 80  MKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATV 139
           MKGLSVGEKLFIQGGIAQDLRTDGRRRL YRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 140 KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 199
           KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 200 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 259
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVS EASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180

Query: 260 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 319
           EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 320 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 365
           GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Csor.00g261860 vs. NCBI nr
Match: XP_022988876.1 (exosome complex component RRP42 [Cucurbita maxima] >XP_022988877.1 exosome complex component RRP42 [Cucurbita maxima])

HSP 1 Score: 541 bits (1395), Expect = 2.50e-192
Identity = 282/286 (98.60%), Postives = 284/286 (99.30%), Query Frame = 0


Query: 80  MKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATV 139
           MKGLSVGEKLFI+GGIAQDLRTDGRRRL YRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIEGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 140 KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 199
           KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSV+LERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVSLERCLLGGKSGAGA 120

Query: 200 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 259
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 260 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 319
           EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRH HVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHCHVC 240

Query: 320 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 365
           GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Csor.00g261860 vs. NCBI nr
Match: XP_022135788.1 (exosome complex component RRP42 [Momordica charantia] >XP_022135789.1 exosome complex component RRP42 [Momordica charantia] >XP_022135790.1 exosome complex component RRP42 [Momordica charantia] >XP_022135791.1 exosome complex component RRP42 [Momordica charantia] >XP_022135792.1 exosome complex component RRP42 [Momordica charantia] >XP_022135793.1 exosome complex component RRP42 [Momordica charantia])

HSP 1 Score: 513 bits (1321), Expect = 4.63e-181
Identity = 261/286 (91.26%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 80  MKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATV 139
           M GLS+GEK FIQGGIAQDLR+DGR RL YRPISVETDVISQANGSARV+MGGTEVIA V
Sbjct: 1   MVGLSIGEKQFIQGGIAQDLRSDGRTRLTYRPISVETDVISQANGSARVKMGGTEVIAAV 60

Query: 140 KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 199
           KAELGRPNAMQPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVAL+RCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALQRCLLGGKSGAGA 120

Query: 200 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 259
           GIDLSSLIVVEGK+CWDLYIEGLVVSS+GNLLD LGAAIKAALSNTGIPKVNV+AEASA+
Sbjct: 121 GIDLSSLIVVEGKICWDLYIEGLVVSSNGNLLDTLGAAIKAALSNTGIPKVNVAAEASAD 180

Query: 260 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 319
           +QPEVD+SDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQM+SAISIS+NRHGH+C
Sbjct: 181 DQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMNSAISISINRHGHIC 240

Query: 320 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 365
           G+TKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GVTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Csor.00g261860 vs. ExPASy TrEMBL
Match: A0A6J1EQ99 (exosome complex component RRP42 OS=Cucurbita moschata OX=3662 GN=LOC111434693 PE=4 SV=1)

HSP 1 Score: 546 bits (1406), Expect = 2.55e-194
Identity = 284/286 (99.30%), Postives = 284/286 (99.30%), Query Frame = 0


Query: 80  MKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATV 139
           MKGLSVGEKLFIQGGIAQDLRTDGRRRL YRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 140 KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 199
           KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 200 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 259
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVS EASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180

Query: 260 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 319
           EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 320 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 365
           GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Csor.00g261860 vs. ExPASy TrEMBL
Match: A0A6J1JIH0 (exosome complex component RRP42 OS=Cucurbita maxima OX=3661 GN=LOC111486098 PE=4 SV=1)

HSP 1 Score: 541 bits (1395), Expect = 1.21e-192
Identity = 282/286 (98.60%), Postives = 284/286 (99.30%), Query Frame = 0


Query: 80  MKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATV 139
           MKGLSVGEKLFI+GGIAQDLRTDGRRRL YRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIEGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 140 KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 199
           KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSV+LERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVSLERCLLGGKSGAGA 120

Query: 200 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 259
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 260 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 319
           EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRH HVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHCHVC 240

Query: 320 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 365
           GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Csor.00g261860 vs. ExPASy TrEMBL
Match: A0A6J1C1R4 (exosome complex component RRP42 OS=Momordica charantia OX=3673 GN=LOC111007665 PE=4 SV=1)

HSP 1 Score: 513 bits (1321), Expect = 2.24e-181
Identity = 261/286 (91.26%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 80  MKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATV 139
           M GLS+GEK FIQGGIAQDLR+DGR RL YRPISVETDVISQANGSARV+MGGTEVIA V
Sbjct: 1   MVGLSIGEKQFIQGGIAQDLRSDGRTRLTYRPISVETDVISQANGSARVKMGGTEVIAAV 60

Query: 140 KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 199
           KAELGRPNAMQPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVAL+RCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALQRCLLGGKSGAGA 120

Query: 200 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 259
           GIDLSSLIVVEGK+CWDLYIEGLVVSS+GNLLD LGAAIKAALSNTGIPKVNV+AEASA+
Sbjct: 121 GIDLSSLIVVEGKICWDLYIEGLVVSSNGNLLDTLGAAIKAALSNTGIPKVNVAAEASAD 180

Query: 260 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 319
           +QPEVD+SDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQM+SAISIS+NRHGH+C
Sbjct: 181 DQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMNSAISISINRHGHIC 240

Query: 320 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 365
           G+TKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GVTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Csor.00g261860 vs. ExPASy TrEMBL
Match: A0A0A0LU91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1)

HSP 1 Score: 508 bits (1309), Expect = 1.51e-179
Identity = 259/286 (90.56%), Postives = 273/286 (95.45%), Query Frame = 0


Query: 80  MKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATV 139
           M GLS GEKLFIQ GIAQDLRTDGR RL YRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 140 KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 199
           KAELGRPN MQPDKGKVSI VDCSPTAEP FEGRGGEEL+TELS+ALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 200 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 259
           GIDLSSLIVVEGKLCWDLYIEGLVVSS+GNLLDALGAAIKAALSNTGIPKV+V+AEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 260 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 319
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS++RHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 320 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 365
           GLTKRGG GVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of Csor.00g261860 vs. ExPASy TrEMBL
Match: A0A1S3B3T5 (exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=4 SV=1)

HSP 1 Score: 498 bits (1282), Expect = 1.94e-175
Identity = 252/286 (88.11%), Postives = 271/286 (94.76%), Query Frame = 0


Query: 80  MKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATV 139
           M GLS GEKLFIQ GIAQDLRTDGR RL YRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 140 KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 199
           KAELGRPN MQ +KGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 200 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 259
           GIDLSSLIVVEGKLCWDLYIEGLV+SS+GNLLDALGAAIKAALSNTGIPKV+++AEAS N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 260 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 319
           EQPEVDVSDEEF+QF+TSGVP IVTLTKVG+HYI+DATLEEESQMSSA+SIS+NRHGH+C
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 320 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 365
           GLTKRGG GVDPS+ILDMISVGK+VSE+LLNKLDSEI AAE DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of Csor.00g261860 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 457.6 bits (1176), Expect = 9.4e-129
Identity = 226/284 (79.58%), Postives = 266/284 (93.66%), Query Frame = 0


Query: 82  GLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATVKA 141
           GLS+GE+ FI+GGIAQDLRTDGR+RL YRPI VET VI QANGSARVR+GGT+VIA+VKA
Sbjct: 2   GLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKA 61

Query: 142 ELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGI 201
           E+GRP+++QPDKGKV++F+DCSPTAEPTF GRGGEEL++EL++AL+RCLLGGKSGAGAGI
Sbjct: 62  EIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGI 121

Query: 202 DLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASANEQ 261
           +LSSL++ EGK+CWDLYI+GLV+SSDGNLLDALGAAIKAAL+NT IPKVNVSAE + +EQ
Sbjct: 122 NLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQ 181

Query: 262 PEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGL 321
           PE+D+SDEE+LQFDTS VPVIVTLTKVG HYIVDAT EEESQMSSA+SISVNR GH+CGL
Sbjct: 182 PEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGL 241

Query: 322 TKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 366
           TKR G+G+DPSVILDMISV KHV+E L++KLDSEI+AAEA E+E
Sbjct: 242 TKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of Csor.00g261860 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 457.6 bits (1176), Expect = 9.4e-129
Identity = 226/284 (79.58%), Postives = 266/284 (93.66%), Query Frame = 0


Query: 82  GLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATVKA 141
           GLS+GE+ FI+GGIAQDLRTDGR+RL YRPI VET VI QANGSARVR+GGT+VIA+VKA
Sbjct: 2   GLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKA 61

Query: 142 ELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGI 201
           E+GRP+++QPDKGKV++F+DCSPTAEPTF GRGGEEL++EL++AL+RCLLGGKSGAGAGI
Sbjct: 62  EIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGI 121

Query: 202 DLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASANEQ 261
           +LSSL++ EGK+CWDLYI+GLV+SSDGNLLDALGAAIKAAL+NT IPKVNVSAE + +EQ
Sbjct: 122 NLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQ 181

Query: 262 PEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGL 321
           PE+D+SDEE+LQFDTS VPVIVTLTKVG HYIVDAT EEESQMSSA+SISVNR GH+CGL
Sbjct: 182 PEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGL 241

Query: 322 TKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 366
           TKR G+G+DPSVILDMISV KHV+E L++KLDSEI+AAEA E+E
Sbjct: 242 TKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of Csor.00g261860 vs. TAIR 10
Match: AT3G12990.1 (ribonuclease PH45A )

HSP 1 Score: 125.9 bits (315), Expect = 6.5e-29
Identity = 84/258 (32.56%), Postives = 135/258 (52.33%), Query Frame = 0


Query: 83  LSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATVKAE 142
           L+V E  F++  +  +LR DGR   +YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 143 LGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGID 202
           L +P   +P +G  SIF + SP A+P+FE     E A EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 203 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN--- 262
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 263 EQPEVDVSDEEFLQFDTSGVPVIVT--LTKVGRHYIVDATLEEESQMSSAISISVNRHGH 322
             PE    + E L      +P+  T      G   ++D T  EE+ M   ++++VN +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 323 VCGLTKRGGAGVDPSVIL 336
           +C + K G  GV+ SVIL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Csor.00g261860 vs. TAIR 10
Match: AT3G12990.2 (ribonuclease PH45A )

HSP 1 Score: 125.9 bits (315), Expect = 6.5e-29
Identity = 84/258 (32.56%), Postives = 135/258 (52.33%), Query Frame = 0


Query: 83  LSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATVKAE 142
           L+V E  F++  +  +LR DGR   +YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 143 LGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGID 202
           L +P   +P +G  SIF + SP A+P+FE     E A EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 203 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN--- 262
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 263 EQPEVDVSDEEFLQFDTSGVPVIVT--LTKVGRHYIVDATLEEESQMSSAISISVNRHGH 322
             PE    + E L      +P+  T      G   ++D T  EE+ M   ++++VN +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 323 VCGLTKRGGAGVDPSVIL 336
           +C + K G  GV+ SVIL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Csor.00g261860 vs. TAIR 10
Match: AT3G12990.3 (ribonuclease PH45A )

HSP 1 Score: 125.9 bits (315), Expect = 6.5e-29
Identity = 84/258 (32.56%), Postives = 135/258 (52.33%), Query Frame = 0


Query: 83  LSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATVKAE 142
           L+V E  F++  +  +LR DGR   +YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 143 LGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGID 202
           L +P   +P +G  SIF + SP A+P+FE     E A EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 203 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN--- 262
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 263 EQPEVDVSDEEFLQFDTSGVPVIVT--LTKVGRHYIVDATLEEESQMSSAISISVNRHGH 322
             PE    + E L      +P+  T      G   ++D T  EE+ M   ++++VN +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 323 VCGLTKRGGAGVDPSVIL 336
           +C + K G  GV+ SVIL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

The following BLAST results are available for this feature:

BLAST of Csor.00g261860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15024	2.4e-52	40.14	Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3	[more]
Q9D0M0	1.0e-50	40.14	Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2	[more]
Q54VM4	1.6e-45	36.76	Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 ...	[more]
O26778	1.1e-33	33.46	Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strai...	[more]
Q8TYC2	7.2e-33	34.88	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]

BLAST of Csor.00g261860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588778.1	1.74e-257	100.00	Exosome complex component RRP42, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023529361.1	1.30e-194	99.65	exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exo...	[more]
XP_022927940.1	5.27e-194	99.30	exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome com...	[more]
XP_022988876.1	2.50e-192	98.60	exosome complex component RRP42 [Cucurbita maxima] >XP_022988877.1 exosome compl...	[more]
XP_022135788.1	4.63e-181	91.26	exosome complex component RRP42 [Momordica charantia] >XP_022135789.1 exosome co...	[more]

BLAST of Csor.00g261860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQ99	2.55e-194	99.30	exosome complex component RRP42 OS=Cucurbita moschata OX=3662 GN=LOC111434693 PE...	[more]
A0A6J1JIH0	1.21e-192	98.60	exosome complex component RRP42 OS=Cucurbita maxima OX=3661 GN=LOC111486098 PE=4...	[more]
A0A6J1C1R4	2.24e-181	91.26	exosome complex component RRP42 OS=Momordica charantia OX=3673 GN=LOC111007665 P...	[more]
A0A0A0LU91	1.51e-179	90.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1	[more]
A0A1S3B3T5	1.94e-175	88.11	exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=...	[more]

BLAST of Csor.00g261860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07750.1	9.4e-129	79.58	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	9.4e-129	79.58	3'-5'-exoribonuclease family protein	[more]
AT3G12990.1	6.5e-29	32.56	ribonuclease PH45A	[more]
AT3G12990.2	6.5e-29	32.56	ribonuclease PH45A	[more]
AT3G12990.3	6.5e-29	32.56	ribonuclease PH45A	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 342..365
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 79..363
None	No IPR available	PANTHER	PTHR11097:SF30	BNAA05G29900D PROTEIN	coord: 79..363
None	No IPR available	CDD	cd11367	RNase_PH_RRP42	coord: 83..354 e-value: 7.66047E-130 score: 371.158
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 109..248 e-value: 3.8E-27 score: 95.4
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 82..365 e-value: 1.8E-81 score: 275.7
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 279..342 e-value: 2.5E-10 score: 40.2
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 83..302
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 275..360

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g261860.m01	Csor.00g261860.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0034473	U1 snRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034476	U5 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)