Csor.00g260520 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g260520
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase isoform 1
Location	Csor_Chr11: 10148110 .. 10148499 (-)
RNA-Seq Expression	Csor.00g260520
Synteny	Csor.00g260520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGTTCCCGTCGACCAGCTTCAACCCCCGCCCTCTGCCGCCGCCATCCACCCCGCCCAAGGCTCCGTCGGCCCCGTCATCGCCGTCCTTGCCGTGATTTCCATCCTCGGCTTCATTGCCGGCATGATCGGCCGCGTCTGCTTTGGGCGTCCCGTTTTTGGCTACAACGCCCACTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTACCTGCCTCGATGGGTCTCTAGACCCTCCCCCGCATCTCCGCCCCCCGCCACCGATCGAAGCTATTCCGGTGTCGGAGCCGCTTGGTGAACCGCCGAACATCAAAGAAGGTGGCGATGGCGATAGGGAACGCGAGAATTTGCAGTCGGTGGCTCCCGGCAGTGGCGGTGAGTCGTGA

mRNA sequence

ATGTCCGTTCCCGTCGACCAGCTTCAACCCCCGCCCTCTGCCGCCGCCATCCACCCCGCCCAAGGCTCCGTCGGCCCCGTCATCGCCGTCCTTGCCGTGATTTCCATCCTCGGCTTCATTGCCGGCATGATCGGCCGCGTCTGCTTTGGGCGTCCCGTTTTTGGCTACAACGCCCACTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTACCTGCCTCGATGGGTCTCTAGACCCTCCCCCGCATCTCCGCCCCCCGCCACCGATCGAAGCTATTCCGGTGTCGGAGCCGCTTGGTGAACCGCCGAACATCAAAGAAGGTGGCGATGGCGATAGGGAACGCGAGAATTTGCAGTCGGTGGCTCCCGGCAGTGGCGGTGAGTCGTGA

Coding sequence (CDS)

ATGTCCGTTCCCGTCGACCAGCTTCAACCCCCGCCCTCTGCCGCCGCCATCCACCCCGCCCAAGGCTCCGTCGGCCCCGTCATCGCCGTCCTTGCCGTGATTTCCATCCTCGGCTTCATTGCCGGCATGATCGGCCGCGTCTGCTTTGGGCGTCCCGTTTTTGGCTACAACGCCCACTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTACCTGCCTCGATGGGTCTCTAGACCCTCCCCCGCATCTCCGCCCCCCGCCACCGATCGAAGCTATTCCGGTGTCGGAGCCGCTTGGTGAACCGCCGAACATCAAAGAAGGTGGCGATGGCGATAGGGAACGCGAGAATTTGCAGTCGGTGGCTCCCGGCAGTGGCGGTGAGTCGTGA

Protein sequence

MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES

Homology

[Close]

BLAST of Csor.00g260520 vs. NCBI nr
Match: KAG6588645.1 (hypothetical protein SDJN03_17210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259 bits (661), Expect = 5.59e-87
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY
Sbjct: 1   MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60

Query: 61  DVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQS 120
           DVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQS
Sbjct: 61  DVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQS 120

Query: 121 VAPGSGGES 129
           VAPGSGGES
Sbjct: 121 VAPGSGGES 129

[Close]

BLAST of Csor.00g260520 vs. NCBI nr
Match: XP_022927713.1 (uncharacterized protein LOC111434531 [Cucurbita moschata])

HSP 1 Score: 250 bits (639), Expect = 1.27e-83
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MSVP+DQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNA Y
Sbjct: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQY 60

Query: 61  DVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQS 120
           DVEDWVEKKCA+CLDGSLDPPPHLRPPPPIEAIPVSEPLG PPNIKEGGDGDRERENLQS
Sbjct: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGDRERENLQS 120

Query: 121 VAPGSGGES 129
           VAPGSGGES
Sbjct: 121 VAPGSGGES 129

[Close]

BLAST of Csor.00g260520 vs. NCBI nr
Match: XP_022989510.1 (uncharacterized protein LOC111486567 [Cucurbita maxima])

HSP 1 Score: 243 bits (619), Expect = 1.42e-80
Identity = 121/129 (93.80%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MSVP+DQLQPPP+AAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY
Sbjct: 1   MSVPLDQLQPPPAAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60

Query: 61  DVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQS 120
           DVEDWVEKKCATCLDGSLDPPP LRPPPPIEAIPV+EPLG PPNIKE GDGD+ERENLQS
Sbjct: 61  DVEDWVEKKCATCLDGSLDPPPLLRPPPPIEAIPVAEPLGGPPNIKEDGDGDKERENLQS 120

Query: 121 VAPGSGGES 129
           V PGSGGES
Sbjct: 121 VPPGSGGES 129

[Close]

BLAST of Csor.00g260520 vs. NCBI nr
Match: XP_023530142.1 (uncharacterized protein LOC111792788 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242 bits (618), Expect = 2.02e-80
Identity = 122/129 (94.57%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MSVP+DQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY
Sbjct: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60

Query: 61  DVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGD--RERENL 120
           DVEDWVEKKCA+CLDGSLDPPPHLRPPPPIEAIPV+EPLG PPNIKEGGDGD  RERENL
Sbjct: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRERENL 120

Query: 121 QSVAPGSGG 127
           QSV PGSGG
Sbjct: 121 QSVPPGSGG 129

[Close]

BLAST of Csor.00g260520 vs. NCBI nr
Match: KAG6571994.1 (hypothetical protein SDJN03_28722, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188 bits (478), Expect = 4.31e-59
Identity = 99/133 (74.44%), Postives = 110/133 (82.71%), Query Frame = 0


Query: 1   MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MS PVDQLQPPP+A   H   GSVGPVIAVLAVISILG IAG+IGR+C GRPVFGY AHY
Sbjct: 1   MSTPVDQLQPPPTA---HSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHY 60

Query: 61  DVEDWVEKKCATCLDGSLDPPP----HLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERE 120
           DVE+WVEKKCA+CLDGSLDPPP    HLR PPP++A+PV EPLG PP IK+G D   +RE
Sbjct: 61  DVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADD--KRE 120

Query: 121 NLQSVAPGSGGES 129
           NLQS APG+GGES
Sbjct: 121 NLQSAAPGTGGES 128

[Close]

BLAST of Csor.00g260520 vs. ExPASy TrEMBL
Match: A0A6J1ELS6 (uncharacterized protein LOC111434531 OS=Cucurbita moschata OX=3662 GN=LOC111434531 PE=4 SV=1)

HSP 1 Score: 250 bits (639), Expect = 6.14e-84
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MSVP+DQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNA Y
Sbjct: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQY 60

Query: 61  DVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQS 120
           DVEDWVEKKCA+CLDGSLDPPPHLRPPPPIEAIPVSEPLG PPNIKEGGDGDRERENLQS
Sbjct: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGDRERENLQS 120

Query: 121 VAPGSGGES 129
           VAPGSGGES
Sbjct: 121 VAPGSGGES 129

[Close]

BLAST of Csor.00g260520 vs. ExPASy TrEMBL
Match: A0A6J1JMK0 (uncharacterized protein LOC111486567 OS=Cucurbita maxima OX=3661 GN=LOC111486567 PE=4 SV=1)

HSP 1 Score: 243 bits (619), Expect = 6.90e-81
Identity = 121/129 (93.80%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MSVP+DQLQPPP+AAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY
Sbjct: 1   MSVPLDQLQPPPAAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60

Query: 61  DVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQS 120
           DVEDWVEKKCATCLDGSLDPPP LRPPPPIEAIPV+EPLG PPNIKE GDGD+ERENLQS
Sbjct: 61  DVEDWVEKKCATCLDGSLDPPPLLRPPPPIEAIPVAEPLGGPPNIKEDGDGDKERENLQS 120

Query: 121 VAPGSGGES 129
           V PGSGGES
Sbjct: 121 VPPGSGGES 129

[Close]

BLAST of Csor.00g260520 vs. ExPASy TrEMBL
Match: A0A5A7SPN0 (Type IV secretion system protein virB10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G00320 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 2.95e-58
Identity = 96/137 (70.07%), Postives = 110/137 (80.29%), Query Frame = 0


Query: 1   MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MS P+DQLQPPP    +H +  SVGP+IAVLAVISILG IAGMIGR+C GRPVFGY AHY
Sbjct: 1   MSTPIDQLQPPPP---LHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHY 60

Query: 61  DVEDWVEKKCATCLDGSLDPPP-------HLRPPPPIEAIPVSEPLG-EPPNIKEGGDGD 120
           DVEDWVEKKCA+CLDGSLDPPP       HLR PPP++++PV+EPLG  PP IK+G D D
Sbjct: 61  DVEDWVEKKCASCLDGSLDPPPPPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQGADAD 120

Query: 121 RERENLQSVAPGSGGES 129
            + ENLQS APG+GGES
Sbjct: 121 AKGENLQSAAPGTGGES 134

[Close]

BLAST of Csor.00g260520 vs. ExPASy TrEMBL
Match: A0A1S3C1T9 (type IV secretion system protein virB10-like OS=Cucumis melo OX=3656 GN=LOC103495668 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 2.95e-58
Identity = 96/137 (70.07%), Postives = 110/137 (80.29%), Query Frame = 0


Query: 1   MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MS P+DQLQPPP    +H +  SVGP+IAVLAVISILG IAGMIGR+C GRPVFGY AHY
Sbjct: 1   MSTPIDQLQPPPP---LHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHY 60

Query: 61  DVEDWVEKKCATCLDGSLDPPP-------HLRPPPPIEAIPVSEPLG-EPPNIKEGGDGD 120
           DVEDWVEKKCA+CLDGSLDPPP       HLR PPP++++PV+EPLG  PP IK+G D D
Sbjct: 61  DVEDWVEKKCASCLDGSLDPPPPPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQGADAD 120

Query: 121 RERENLQSVAPGSGGES 129
            + ENLQS APG+GGES
Sbjct: 121 AKGENLQSAAPGTGGES 134

[Close]

BLAST of Csor.00g260520 vs. ExPASy TrEMBL
Match: A0A6J1GL66 (uncharacterized protein LOC111455383 OS=Cucurbita moschata OX=3662 GN=LOC111455383 PE=4 SV=1)

HSP 1 Score: 185 bits (470), Expect = 4.33e-58
Identity = 97/131 (74.05%), Postives = 108/131 (82.44%), Query Frame = 0


Query: 1   MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MS PVDQLQPPP+A   H   GSVGPVIAVLAVISILG IAG+IGR+C GRPVFGY AHY
Sbjct: 1   MSTPVDQLQPPPTA---HSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHY 60

Query: 61  DVEDWVEKKCATCLDGSLDPPP----HLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERE 120
           DVE+WVEKKCA+CLDGSLDPPP    HLR PPP++A+PV EPLG PP IK+G D   +RE
Sbjct: 61  DVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADD--KRE 120

Query: 121 NLQSVAPGSGG 127
           NLQS APG+GG
Sbjct: 121 NLQSAAPGTGG 126

[Close]

BLAST of Csor.00g260520 vs. TAIR 10
Match: AT2G26520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 8.1e-11
Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 9  QPPP-------SAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHYD 68
          QPPP       S++       ++GP IAV  V+++L  +A +IGR+C G+ + GY   YD
Sbjct: 9  QPPPATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGY-GDYD 68

Query: 69 VEDWVEKKCATCLDGSLDP-PPHLRPPPP 90
          +E W E +C +C+DG + P  P   P PP
Sbjct: 69 MERWAESRCGSCIDGHIHPHRPSPSPTPP 96

[Close]

BLAST of Csor.00g260520 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 40/113 (35.40%), Postives = 57/113 (50.44%), Query Frame = 0


Query: 6   DQLQPPPSAAAIHPA----------QGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFG 65
           DQL   P+   I P             S+  ++ VLAVI+IL  +AG+  R+C GR +  
Sbjct: 10  DQLSTTPTTIYIDPPSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHL-S 69

Query: 66  YNAHYDVEDWVEKKCATCLDGSL-------DPPPHLRPPPPIEAIPVSEPLGE 102
           +   +D+E WVE+KC +C+D  +        PPP   PPPP  A   S+P  E
Sbjct: 70  HGGDHDIEGWVERKCRSCIDAGIPAVSAAPSPPP---PPPPATAEERSKPAAE 118

The following BLAST results are available for this feature:

BLAST of Csor.00g260520 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g260520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588645.1	5.59e-87	100.00	hypothetical protein SDJN03_17210, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022927713.1	1.27e-83	96.90	uncharacterized protein LOC111434531 [Cucurbita moschata]	[more]
XP_022989510.1	1.42e-80	93.80	uncharacterized protein LOC111486567 [Cucurbita maxima]	[more]
XP_023530142.1	2.02e-80	94.57	uncharacterized protein LOC111792788 [Cucurbita pepo subsp. pepo]	[more]
KAG6571994.1	4.31e-59	74.44	hypothetical protein SDJN03_28722, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g260520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ELS6	6.14e-84	96.90	uncharacterized protein LOC111434531 OS=Cucurbita moschata OX=3662 GN=LOC1114345...	[more]
A0A6J1JMK0	6.90e-81	93.80	uncharacterized protein LOC111486567 OS=Cucurbita maxima OX=3661 GN=LOC111486567...	[more]
A0A5A7SPN0	2.95e-58	70.07	Type IV secretion system protein virB10-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3C1T9	2.95e-58	70.07	type IV secretion system protein virB10-like OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1GL66	4.33e-58	74.05	uncharacterized protein LOC111455383 OS=Cucurbita moschata OX=3662 GN=LOC1114553...	[more]

BLAST of Csor.00g260520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26520.1	8.1e-11	38.20	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57500.1	1.2e-09	35.40	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..96
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 1..90
None	No IPR available	PANTHER	PTHR33429:SF2	OS01G0888850 PROTEIN	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g260520.m01	Csor.00g260520.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane