Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAATGCTTCTTCTTTATTCCTTTGGGAAGACACAGCAGATTCTGAGGTGGATAGATTATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCCGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCGGAGCGCTGTTGATCTCCAAGATGATGGGGATGGTGATGAAGATCGAGCCGTTGGTTCGACCGGTGACGACGCTCGATCAAGCCATCTCGATGAAACACGACCAAGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTGCGATCCGAGATATGAACGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA
mRNA sequence
ATGAACAATGCTTCTTCTTTATTCCTTTGGGAAGACACAGCAGATTCTGAGGTGGATAGATTATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCCGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCGGAGCGCTGTTGATCTCCAAGATGATGGGGATGGTGATGAAGATCGAGCCGTTGGTTCGACCGGTGACGACGCTCGATCAAGCCATCTCGATGAAACACGACCAAGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTGCGATCCGAGATATGAACGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA
Coding sequence (CDS)
ATGAACAATGCTTCTTCTTTATTCCTTTGGGAAGACACAGCAGATTCTGAGGTGGATAGATTATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCCGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCGGAGCGCTGTTGATCTCCAAGATGATGGGGATGGTGATGAAGATCGAGCCGTTGGTTCGACCGGTGACGACGCTCGATCAAGCCATCTCGATGAAACACGACCAAGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTGCGATCCGAGATATGAACGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA
Protein sequence
MNNASSLFLWEDTADSEVDRLLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGDGDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAIRDMNEMEDKLFWDTCMEGGYP
Homology
BLAST of Csor.00g259430 vs. NCBI nr
Match:
KAG6575041.1 (hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 257 bits (657), Expect = 2.64e-86
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
Query: 1 MNNASSLFLWEDTADSEVDRLLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGD 60
MNNASSLFLWEDTADSEVDRLLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGD
Sbjct: 1 MNNASSLFLWEDTADSEVDRLLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGD 60
Query: 61 GDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAIRDMNEMEDKL 120
GDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAIRDMNEMEDKL
Sbjct: 61 GDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAIRDMNEMEDKL 120
Query: 121 FWDTCMEGGYP 131
FWDTCMEGGYP
Sbjct: 121 FWDTCMEGGYP 131
BLAST of Csor.00g259430 vs. NCBI nr
Match:
KAA0033453.1 (hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa])
HSP 1 Score: 137 bits (344), Expect = 1.47e-38
Identity = 85/140 (60.71%), Postives = 102/140 (72.86%), Query Frame = 0
Query: 1 MNNASSLFLWEDTADSEVDRLLSHPHQLESAVDDP--EDARSCSCD--DYATDR-SAVDL 60
+ +ASS FLWED+ADSEVD+LLSHPH+LESAVDD EDA SCSC+ D++ D A+D
Sbjct: 4 IKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRALDF 63
Query: 61 QDDGDG---DEDRAVGSTGDDARSSHLDETRPSGATLEYS-SEEDEEEEEESNNNVGAIR 120
QDDGD D D+ + GD R R SGA L+Y EE+EEEEEES+++VG IR
Sbjct: 64 QDDGDNGDRDLDQDICLIGDGGR-------RRSGAALKYGYEEEEEEEEEESSDDVGVIR 123
Query: 121 DMNEMEDKLFWDTCMEGGYP 131
+MNEMEDKLFWDTCM GGYP
Sbjct: 124 NMNEMEDKLFWDTCMAGGYP 136
BLAST of Csor.00g259430 vs. NCBI nr
Match:
KAE8646684.1 (hypothetical protein Csa_005604 [Cucumis sativus])
HSP 1 Score: 115 bits (289), Expect = 4.23e-30
Identity = 79/126 (62.70%), Postives = 89/126 (70.63%), Query Frame = 0
Query: 13 TADSEVDRLLSHP-HQLESAVDDP---EDARSCSCDDYATDRSAVDLQD--DGD-GDEDR 72
+ADSEVD+LLSHP HQLESAVDD EDA SCSC++ D S D QD DGD GD D+
Sbjct: 31 SADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNN--NDFSIDDFQDAYDGDNGDGDQ 90
Query: 73 AVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAIRDMNEMEDKLFWDTC 131
+G GD R R SGA Y EE+EEEEE SNN+VGAIR+MNEMEDK+FWDTC
Sbjct: 91 DIGLIGDGGR-------RRSGAG--YEEEEEEEEEESSNNDVGAIRNMNEMEDKVFWDTC 145
BLAST of Csor.00g259430 vs. NCBI nr
Match:
KAE8076890.1 (hypothetical protein FH972_015512 [Carpinus fangiana])
HSP 1 Score: 63.2 bits (152), Expect = 1.53e-09
Identity = 56/148 (37.84%), Postives = 69/148 (46.62%), Query Frame = 0
Query: 3 NASSLFLWEDTADSEVDRLLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGDGD 62
+ SS L+ED ADSE D H++ + DD +DA SCSCDD D + D D
Sbjct: 2 DVSSCLLFEDIADSETDA-AGPDHKIHA--DDDQDAESCSCDDACDDHHTPGFDEALDCD 61
Query: 63 EDRAVGSTGDDARSSHLDETRPSGATL---------EYSSEEDEEEEEESNNNVGAIR-- 122
E + S G DA H RP + SSEE E EEE N+G I
Sbjct: 62 EKDSGASNGGDAGDDHHQCGRPCASCCLSSDHAALGSLSSEEGEGEEE---TNMGEINKD 121
Query: 123 --------DMNEMEDKLFWDTCMEGGYP 131
+ +EMED LFW+TCM GYP
Sbjct: 122 DPSKKKEINKDEMEDGLFWETCMAVGYP 143
BLAST of Csor.00g259430 vs. NCBI nr
Match:
KAG2727271.1 (hypothetical protein I3760_01G150500 [Carya illinoinensis])
HSP 1 Score: 60.5 bits (145), Expect = 1.79e-08
Identity = 53/135 (39.26%), Postives = 69/135 (51.11%), Query Frame = 0
Query: 9 LWEDTADSE----VDRLLSHPHQLESAVDDPE--DARSCSCD---DY---ATDRSAVDLQ 68
L EDTADS V L +H ++ A DD + DA SCSCD DY + VD
Sbjct: 15 LLEDTADSHDTEAVPDLKTHAAEVAIAGDDDDLQDAESCSCDCTSDYNKRGFSKVDVDDC 74
Query: 69 DDGDGDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAIRDMNEM 128
DD D D G+ GDD R D +T + + E + + EE +G +M+EM
Sbjct: 75 DDQDSDGGSNFGNDGDDHREKSADSCCEIRSTSDVALECNFSKGEEKK--IGEFNNMDEM 134
Query: 129 EDKLFWDTCMEGGYP 131
ED+LFW+TCM GYP
Sbjct: 135 EDRLFWETCMAEGYP 147
BLAST of Csor.00g259430 vs. ExPASy TrEMBL
Match:
A0A5A7SSL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001140 PE=4 SV=1)
HSP 1 Score: 137 bits (344), Expect = 7.14e-39
Identity = 85/140 (60.71%), Postives = 102/140 (72.86%), Query Frame = 0
Query: 1 MNNASSLFLWEDTADSEVDRLLSHPHQLESAVDDP--EDARSCSCD--DYATDR-SAVDL 60
+ +ASS FLWED+ADSEVD+LLSHPH+LESAVDD EDA SCSC+ D++ D A+D
Sbjct: 4 IKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRALDF 63
Query: 61 QDDGDG---DEDRAVGSTGDDARSSHLDETRPSGATLEYS-SEEDEEEEEESNNNVGAIR 120
QDDGD D D+ + GD R R SGA L+Y EE+EEEEEES+++VG IR
Sbjct: 64 QDDGDNGDRDLDQDICLIGDGGR-------RRSGAALKYGYEEEEEEEEEESSDDVGVIR 123
Query: 121 DMNEMEDKLFWDTCMEGGYP 131
+MNEMEDKLFWDTCM GGYP
Sbjct: 124 NMNEMEDKLFWDTCMAGGYP 136
BLAST of Csor.00g259430 vs. ExPASy TrEMBL
Match:
A0A0A0KBF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1)
HSP 1 Score: 133 bits (335), Expect = 1.39e-37
Identity = 87/138 (63.04%), Postives = 99/138 (71.74%), Query Frame = 0
Query: 1 MNNASSLFLWEDTADSEVDRLLSHP-HQLESAVDDP---EDARSCSCDDYATDRSAVDLQ 60
+ +ASS FLWED+ADSEVD+LLSHP HQLESAVDD EDA SCSC++ D S D Q
Sbjct: 4 IKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNN--NDFSIDDFQ 63
Query: 61 D--DGD-GDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAIRDM 120
D DGD GD D+ +G GD R R SGA Y EE+EEEEE SNN+VGAIR+M
Sbjct: 64 DAYDGDNGDGDQDIGLIGDGGR-------RRSGAG--YEEEEEEEEEESSNNDVGAIRNM 123
Query: 121 NEMEDKLFWDTCMEGGYP 131
NEMEDK+FWDTCM GGYP
Sbjct: 124 NEMEDKVFWDTCMAGGYP 130
BLAST of Csor.00g259430 vs. ExPASy TrEMBL
Match:
A0A5N6RGD2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_015512 PE=4 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 7.40e-10
Identity = 56/148 (37.84%), Postives = 69/148 (46.62%), Query Frame = 0
Query: 3 NASSLFLWEDTADSEVDRLLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGDGD 62
+ SS L+ED ADSE D H++ + DD +DA SCSCDD D + D D
Sbjct: 2 DVSSCLLFEDIADSETDA-AGPDHKIHA--DDDQDAESCSCDDACDDHHTPGFDEALDCD 61
Query: 63 EDRAVGSTGDDARSSHLDETRPSGATL---------EYSSEEDEEEEEESNNNVGAIR-- 122
E + S G DA H RP + SSEE E EEE N+G I
Sbjct: 62 EKDSGASNGGDAGDDHHQCGRPCASCCLSSDHAALGSLSSEEGEGEEE---TNMGEINKD 121
Query: 123 --------DMNEMEDKLFWDTCMEGGYP 131
+ +EMED LFW+TCM GYP
Sbjct: 122 DPSKKKEINKDEMEDGLFWETCMAVGYP 143
BLAST of Csor.00g259430 vs. ExPASy TrEMBL
Match:
A0A2N9EJU4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2920 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 5.47e-09
Identity = 49/133 (36.84%), Postives = 69/133 (51.88%), Query Frame = 0
Query: 3 NASSLFLWEDTADSEVDRLLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGDGD 62
+ SS L+EDTADSE D + H + + + D +DA SCSCD D+ D D
Sbjct: 11 DVSSSLLFEDTADSETDAEI-HADDVATDIFDDQDAESCSCDTCDDDKLGFTDHQVLDCD 70
Query: 63 EDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDE----EEEEESNNNVGAIRDMNEMED 122
+ + S+G + E SG + S+E+ +E E V I D++EMED
Sbjct: 71 DQDSGNSSGINHGDDDHHEPSTSGCNQLWLSDENSGCLSRKEGEEETKVDKI-DVDEMED 130
Query: 123 KLFWDTCMEGGYP 131
+LFW+TCME GYP
Sbjct: 131 RLFWETCMEVGYP 141
BLAST of Csor.00g259430 vs. ExPASy TrEMBL
Match:
A0A2H5N748 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020050 PE=4 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 4.12e-08
Identity = 52/142 (36.62%), Postives = 73/142 (51.41%), Query Frame = 0
Query: 3 NASSLFLWEDTADSEVDRLLSHPHQLES--AVDDPEDARSCSCDDYATDRSAVDLQDDG- 62
+ SS L E++ADSEVD L ++ A D +DA SCSCD +++Q +G
Sbjct: 8 DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCD-------TIEMQAEGL 67
Query: 63 DGDEDRAVGSTGDDARSSHLDETRP----SGATLEYSSEEDEEEEEES-----NNNVGA- 122
D D D + DD S D+ R + ++ D+EEE S NNN+
Sbjct: 68 DYDHDHKNEESNDDGDGSSTDQHRQINWGGSCKIWWADAADDEEEYSSWDIGINNNISRK 127
Query: 123 IRDMNEMEDKLFWDTCMEGGYP 131
++D EMED+LFW+TCM GYP
Sbjct: 128 VKD--EMEDRLFWETCMAFGYP 140
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6575041.1 | 2.64e-86 | 100.00 | hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0033453.1 | 1.47e-38 | 60.71 | hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa] | [more] |
KAE8646684.1 | 4.23e-30 | 62.70 | hypothetical protein Csa_005604 [Cucumis sativus] | [more] |
KAE8076890.1 | 1.53e-09 | 37.84 | hypothetical protein FH972_015512 [Carpinus fangiana] | [more] |
KAG2727271.1 | 1.79e-08 | 39.26 | hypothetical protein I3760_01G150500 [Carya illinoinensis] | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7SSL9 | 7.14e-39 | 60.71 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A0A0KBF3 | 1.39e-37 | 63.04 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1 | [more] |
A0A5N6RGD2 | 7.40e-10 | 37.84 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_015512 PE=4 SV=1 | [more] |
A0A2N9EJU4 | 5.47e-09 | 36.84 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2920 PE=4 SV=1 | [more] |
A0A2H5N748 | 4.12e-08 | 36.62 | Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020050 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |