Csor.00g258520 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g258520
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr17: 1067612 .. 1069835 (+)
RNA-Seq ExpressionCsor.00g258520
SyntenyCsor.00g258520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCAATTGGAACATCCAAGGGAATTCTGGAGATCGCCAAGTTCGGTATTTATGTTACTATACCGATCTTTTTAATGTACACCTTCGCCAACAATAGCAAAAATCTCCAGAAATTCATTGGCAAAGTAAGTGTCTATTTCCCTTTCTTCCTTCCCTAAAATTATGTTTGTGGATCTGCACATAGTTATATATGGACTGGTTATTGACAAATATTTTTCCCTTTTTTCGGGGTGGAGGTGTCCTGTAATTGCTGATTGCTGTTAAGATTATCTGTGCGTCGTTTAATTTCGTTTCTTTTAGAATTTATCGAGCTGTTAGGGATTTGCTATGGGAAATTCACTGGTTTTTCAAGGTATCGGAACTCGTTGAGGGTTAATTCACAATCTTTTGTGAATGACAATAAAATATAACAGACAGTAATTTATGGGGAAAAAAAGTTTTCAATGATGCTCATACTGAGAGTGGGGAGTTTGGATAAATGAAGAACGTGTTTATATTTGGTTAAATTGCAAGTTTAGTCTCTCAATTACTAGCACAAAATTGAACCTTTTAACAATTCATTAAACATAAAATTTAAATCTATTTCTGTAGATCAATTAATTTTTAGAGCCTCACACACTATTGAAAGCTAAGGCTCCTTTTAGACATTAGATTGAAACTTTGGAGTCCTGTTAGACACTTTTGTTAGTAGACCAAATAAGCACAAATTTCGAAGTTTATGGGCCTAACTCGCAATTGAACCTTTATAGTTTCTTAATTGATTTAGCTCTAGCTTTGTTCATTTTATGCTTGTATCCTCCATGGGTTGGTGAATCTATGAGCTTTCCAGGCAGTATTGAACCATAGAAGTTACTTAAAAATACATTTTGTTAGCGAAGTCAAGCCTTTCATATGAATTGGGCAGTTCATTTGTCAGCATTTTCAGCTTCATTAGAAGTAAAAACTATCGATACAATATTATTGTTCTTATCTTCATAAGCATTAGTTCTTATGTTCTACTATATAATATCAAGGGTTTAATTGAATTACTTCCTCTTCTGATAGTCTTATATAGTGTATCCTCCTGAGGGACCGAGGCCTCCGTCACCAGAAGAAGTAAGAGAGATGGCACGGGAATTGGCTCGAAAGAACAACATTCGCTGATGATATGTGGTCAGTGAGTAATGCAGCATTTAAGTCATATTTTCAGATTGTCGAGTTGATTGTTTCACATGTATTTATCTGTTCATAGAGTAATTGATGACTATCAATATTTAGGAGCAACTATGAATCAGCCTTTGGTTAGTTCAGGTGGGATAAAGATGATAAGGGCCAAACTCAACTTGCTGAGATAAACAGCCTATCTGTACTATGGTCCTGCTACTGCTCTAACTGTGGTAATATGTCTGTGTAATAATGGGGGGAAAAAGTCTTATTTAGATCAATGTGATGGGATTGATACACAGTGATGCTGTTTTTCTTAATAAAGTAGAACTTTGGGGAATAATCTGAGAGATTGACCTAAGACCAATATGTTTCTATTTCCTTCTCTAAAACTCCCTCCCATGTCTTCTCCCTCCAACTCCCTTCCCTGTATTTCACCTCTGACGACGACAATGCTCTCTTCCATGTCTTCTTCCTCTGGTGACAGCAACGGTGACAACGAGTAGAGTTGTTTCTTCTGTCTCTAGAGGTCGAACGAGCGAGAAAAGCAATCAATAATCCTGAAAAAGGGTTGGTGACACAGGTTAGAAAGCTTTGTTTTGAAGAACTCGGTCAAATTTCAGTTTTAAGTCTGGAATGTGAAGGGAGACATGTTATATGTGGAGATCAATGATTTTGAAGCATACTAGCTATGAGATCACACATCATTTAGAGAGTGAAACGAAATATTCCTTATAAGGGTGTGAAAACTTCTCTTTGGTAGGCGCGTTTTAAAACCATAAGGTTGAGACGATACGTAACAGACCATAACAGAATATCTGTTAGCGAAAGACTTAGGTTATTACATTATGACCTTTGTTTCAGGTTGTAATTGTTTGAGTATAGTTTTTACCGGAGAAAGTATAGACTTGTGAGTTGTTTATAGGTCGAGTTGGCTCATACTTGTACATTGATCATCTTCAAGTCATGATATTGCTTACTATCAGCTACCTTCAACCTTCCATTGTATAGTAATGGGTTTGTTGTTTATAGGTCGAGTCGGCTGAAACTTGTACATTGACCATCTTCAAGTCGTGA

mRNA sequence

ATGTCTTCAATTGGAACATCCAAGGGAATTCTGGAGATCGCCAAGTTCGGTATTTATGTTACTATACCGATCTTTTTAATGTACACCTTCGCCAACAATAGCAAAAATCTCCAGAAATTCATTGGCAAATCTTATATAGTAACAACATTCGCTGATGATATGTGGAGCAACTATGAATCAGCCTTTGAGGTCGAACGAGCGAGAAAAGCAATCAATAATCCTGAAAAAGGGTTGGTGACACAGGTCGAGTCGGCTGAAACTTGTACATTGACCATCTTCAAGTCGTGA

Coding sequence (CDS)

ATGTCTTCAATTGGAACATCCAAGGGAATTCTGGAGATCGCCAAGTTCGGTATTTATGTTACTATACCGATCTTTTTAATGTACACCTTCGCCAACAATAGCAAAAATCTCCAGAAATTCATTGGCAAATCTTATATAGTAACAACATTCGCTGATGATATGTGGAGCAACTATGAATCAGCCTTTGAGGTCGAACGAGCGAGAAAAGCAATCAATAATCCTGAAAAAGGGTTGGTGACACAGGTCGAGTCGGCTGAAACTTGTACATTGACCATCTTCAAGTCGTGA

Protein sequence

MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVTTFADDMWSNYESAFEVERARKAINNPEKGLVTQVESAETCTLTIFKS
Homology
[Close]
BLAST of Csor.00g258520 vs. NCBI nr
Match: KAG6574950.1 (hypothetical protein SDJN03_25589, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187 bits (476), Expect = 7.62e-60
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVTTFADDMWSNYES 60
          MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVTTFADDMWSNYES
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVTTFADDMWSNYES 60

Query: 61 AFEVERARKAINNPEKGLVTQVESAETCTLTIFKS 95
          AFEVERARKAINNPEKGLVTQVESAETCTLTIFKS
Sbjct: 61 AFEVERARKAINNPEKGLVTQVESAETCTLTIFKS 95

[Close]
BLAST of Csor.00g258520 vs. NCBI nr
Match: XP_023006766.1 (uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023006767.1 uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023006768.1 uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023006769.1 uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023547605.1 uncharacterized protein LOC111806495 [Cucurbita pepo subsp. pepo] >XP_023547606.1 uncharacterized protein LOC111806495 [Cucurbita pepo subsp. pepo] >KAG7013515.1 hypothetical protein SDJN02_23681 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.8 bits (229), Expect = 1.94e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV 47
          MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV 47

[Close]
BLAST of Csor.00g258520 vs. NCBI nr
Match: XP_022958891.1 (uncharacterized protein LOC111460043 [Cucurbita moschata] >XP_022958892.1 uncharacterized protein LOC111460043 [Cucurbita moschata] >XP_022958893.1 uncharacterized protein LOC111460043 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 2.75e-22
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV 47
          MSSIGTSKGILEIAKFGIYVT+PIFLMYTFANNSKNLQKFIGKSYIV
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIV 47

[Close]
BLAST of Csor.00g258520 vs. NCBI nr
Match: XP_022138377.1 (uncharacterized protein LOC111009565 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 4.55e-21
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV 47
          MSSIGTSKGILEIAKFG+YV+IPIFLMYTFANNSKNLQ+FIGKSYIV
Sbjct: 1  MSSIGTSKGILEIAKFGLYVSIPIFLMYTFANNSKNLQRFIGKSYIV 47

[Close]
BLAST of Csor.00g258520 vs. NCBI nr
Match: XP_004150908.1 (uncharacterized protein LOC101207372 [Cucumis sativus] >XP_031737030.1 uncharacterized protein LOC101207372 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.85e-20
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV 47
          MSSIGTSKGILEIAKFGIYVTIPI LMYTFANNSKNLQ+F+GKSYIV
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIV 47

[Close]
BLAST of Csor.00g258520 vs. ExPASy TrEMBL
Match: A0A6J1L334 (uncharacterized protein LOC111499403 OS=Cucurbita maxima OX=3661 GN=LOC111499403 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.39e-23
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV 47
          MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV 47

[Close]
BLAST of Csor.00g258520 vs. ExPASy TrEMBL
Match: A0A6J1H3E4 (uncharacterized protein LOC111460043 OS=Cucurbita moschata OX=3662 GN=LOC111460043 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.33e-22
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV 47
          MSSIGTSKGILEIAKFGIYVT+PIFLMYTFANNSKNLQKFIGKSYIV
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIV 47

[Close]
BLAST of Csor.00g258520 vs. ExPASy TrEMBL
Match: A0A6J1CAY1 (uncharacterized protein LOC111009565 OS=Momordica charantia OX=3673 GN=LOC111009565 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.20e-21
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV 47
          MSSIGTSKGILEIAKFG+YV+IPIFLMYTFANNSKNLQ+FIGKSYIV
Sbjct: 1  MSSIGTSKGILEIAKFGLYVSIPIFLMYTFANNSKNLQRFIGKSYIV 47

[Close]
BLAST of Csor.00g258520 vs. ExPASy TrEMBL
Match: A0A0A0LIL9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G205950 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.94e-21
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV 47
          MSSIGTSKGILEIAKFGIYVTIPI LMYTFANNSKNLQ+F+GKSYIV
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIV 47

[Close]
BLAST of Csor.00g258520 vs. ExPASy TrEMBL
Match: A0A1S3BLQ1 (uncharacterized protein LOC103491216 OS=Cucumis melo OX=3656 GN=LOC103491216 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.18e-21
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIV 47
          MSSIGTSKGILEIAKFGIYVTIPI LMYTFANNSKNLQ+F+GKSYIV
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIV 47

[Close]
BLAST of Csor.00g258520 vs. TAIR 10
Match: AT4G14615.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52825.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 3.4e-14
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIG-KSYIV 48
          MSS+GTSKG+LEI KFG+YV +PI LMYTFANNS N++KF+G +SY+V
Sbjct: 1  MSSVGTSKGVLEIVKFGVYVAVPIVLMYTFANNSTNIKKFMGNRSYVV 48

[Close]
BLAST of Csor.00g258520 vs. TAIR 10
Match: AT1G52825.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14615.1); Has 52 Blast hits to 49 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 4.4e-14
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGK-SYIV 48
          MSS+GTSKGILEIAKFG+YV +PI L+YTFANNS N++KF+G  SY+V
Sbjct: 1  MSSVGTSKGILEIAKFGVYVAVPIVLIYTFANNSTNIKKFMGNHSYVV 48

The following BLAST results are available for this feature:
BLAST of Csor.00g258520 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g258520 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6574950.17.62e-60100.00hypothetical protein SDJN03_25589, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023006766.11.94e-22100.00uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023006767.1 uncharac... [more]
XP_022958891.12.75e-2297.87uncharacterized protein LOC111460043 [Cucurbita moschata] >XP_022958892.1 unchar... [more]
XP_022138377.14.55e-2193.62uncharacterized protein LOC111009565 [Momordica charantia][more]
XP_004150908.11.85e-2093.62uncharacterized protein LOC101207372 [Cucumis sativus] >XP_031737030.1 uncharact... [more]
BLAST of Csor.00g258520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1L3349.39e-23100.00uncharacterized protein LOC111499403 OS=Cucurbita maxima OX=3661 GN=LOC111499403... [more]
A0A6J1H3E41.33e-2297.87uncharacterized protein LOC111460043 OS=Cucurbita moschata OX=3662 GN=LOC1114600... [more]
A0A6J1CAY12.20e-2193.62uncharacterized protein LOC111009565 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A0A0LIL98.94e-2193.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G205950 PE=4 SV=1[more]
A0A1S3BLQ19.18e-2193.62uncharacterized protein LOC103491216 OS=Cucumis melo OX=3656 GN=LOC103491216 PE=... [more]
BLAST of Csor.00g258520 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G14615.13.4e-1470.83unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G52825.14.4e-1472.92unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018625Protein Pet100PFAMPF09803Pet100coord: 11..41
e-value: 2.1E-6
score: 28.1
NoneNo IPR availablePANTHERPTHR35700OS07G0181800 PROTEINcoord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g258520.m01Csor.00g258520.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0033617 mitochondrial cytochrome c oxidase assembly
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion