Csor.00g256810 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g256810
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Ring finger protein, putative
Location	Csor_Chr17: 66039 .. 66979 (-)
RNA-Seq Expression	Csor.00g256810
Synteny	Csor.00g256810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGGTTCTGGTATGAACTTTATTACCACTGTTGTCGGGTTTGGAATGAGTGCCACATTCATAGTGTTCATCTGTACAAGAATCATCTGTGGTCGACTTCGTTCGTCTCAATCCAATAGACTCAATTACGAGATTGAATCCAGGGTGGATCTTGAGCAGCAGGTAAGAAGTAATGCCATCTCTCTTAATCTGGATCTGCACAGTGCGTTTTCTATATGTTTGTAGATCATGAAATCTCATTGGTTAATTATCATATGCTACTCAGTCTACTGGTGTAGCCAAGGATTAGAATGACAGCATTGTCTCGCATCTATATGTCAAAATGATGAGCTTCTTGATTCTTTTTTGTTGTTTGATGCCAGCCAGAGTCTCGGGCAAGTGGTCTCGAACCGGTTCTCATCGCCGCTATTCCAACTATGAAGTTCAATCGAGAAGCTTTCAATTCTGTAGAAGATGCTCAGTAAGTAAAACTTTTAATTCATTAGCATAAGAATAGATAGTTAGGCTTACAGTTCTGTAGAAGATGTTGAGCACTGATAGATAGATAACCTGACCCACTAAACTATGGCTTATTGTGCTCCACTTTCAGGTGTTCAATCTGTTTGGGTGAGTATGAAGAGAAGGAAGTACTGAGAATGATGCCCAAATGCGGTCACAGATTTCATCGCTCCTGCATTGATGTTTGGCTGAGAAAGCAATCTACATGCCCAATTTGCAGGCTGCCATTGCAAGACTCTTCTACAACAAAACCTGCAAGACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACCGATCATCATTCTCAACACTGGCTTCTACCTGGCCCCAACCGTTCGGAGGGCAACACAAGCAACCAGACACAGCTTGAATCCGTTCCAGTAAACCCCTCAGTTCAAAGAGAGATAGAAACAATACGATGA

mRNA sequence

ATGACGGGTTCTGGTATGAACTTTATTACCACTGTTGTCGGGTTTGGAATGAGTGCCACATTCATAGTGTTCATCTGTACAAGAATCATCTGTGGTCGACTTCGTTCGTCTCAATCCAATAGACTCAATTACGAGATTGAATCCAGGGTGGATCTTGAGCAGCAGCCAGAGTCTCGGGCAAGTGGTCTCGAACCGGTTCTCATCGCCGCTATTCCAACTATGAAGTTCAATCGAGAAGCTTTCAATTCTGTAGAAGATGCTCAGTGTTCAATCTGTTTGGGTGAGTATGAAGAGAAGGAAGTACTGAGAATGATGCCCAAATGCGGTCACAGATTTCATCGCTCCTGCATTGATGTTTGGCTGAGAAAGCAATCTACATGCCCAATTTGCAGGCTGCCATTGCAAGACTCTTCTACAACAAAACCTGCAAGACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACCGATCATCATTCTCAACACTGGCTTCTACCTGGCCCCAACCGTTCGGAGGGCAACACAAGCAACCAGACACAGCTTGAATCCGTTCCAGTAAACCCCTCAGTTCAAAGAGAGATAGAAACAATACGATGA

Coding sequence (CDS)

ATGACGGGTTCTGGTATGAACTTTATTACCACTGTTGTCGGGTTTGGAATGAGTGCCACATTCATAGTGTTCATCTGTACAAGAATCATCTGTGGTCGACTTCGTTCGTCTCAATCCAATAGACTCAATTACGAGATTGAATCCAGGGTGGATCTTGAGCAGCAGCCAGAGTCTCGGGCAAGTGGTCTCGAACCGGTTCTCATCGCCGCTATTCCAACTATGAAGTTCAATCGAGAAGCTTTCAATTCTGTAGAAGATGCTCAGTGTTCAATCTGTTTGGGTGAGTATGAAGAGAAGGAAGTACTGAGAATGATGCCCAAATGCGGTCACAGATTTCATCGCTCCTGCATTGATGTTTGGCTGAGAAAGCAATCTACATGCCCAATTTGCAGGCTGCCATTGCAAGACTCTTCTACAACAAAACCTGCAAGACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACCGATCATCATTCTCAACACTGGCTTCTACCTGGCCCCAACCGTTCGGAGGGCAACACAAGCAACCAGACACAGCTTGAATCCGTTCCAGTAAACCCCTCAGTTCAAAGAGAGATAGAAACAATACGATGA

Protein sequence

MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRASGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNTSNQTQLESVPVNPSVQREIETIR

Homology

[Close]

BLAST of Csor.00g256810 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.6e-16
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 55  QPESRASGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHR 114
           Q  S  S L+P ++  IP   ++ +   S  + +CS+CL E+EE +  R++PKCGH FH 
Sbjct: 80  QSSSSLSPLDPTVLEKIPIFVYSVKTHESPLE-ECSVCLSEFEEDDEGRVLPKCGHVFHV 139

Query: 115 SCIDVWLRKQSTCPICRLPLQDSSTTKPARPMT 148
            CID W R +S+CP+CR P+Q      PA+P+T
Sbjct: 140 DCIDTWFRSRSSCPLCRAPVQ------PAQPVT 165

[Close]

BLAST of Csor.00g256810 vs. ExPASy Swiss-Prot
Match: Q9SN28 (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 53/152 (34.87%), Postives = 80/152 (52.63%), Query Frame = 0


Query: 20  TFIVFICTRIICGRLRSSQS---NRLNYEIESRVDLEQQPESRASGLEPVLIAAIPTMKF 79
           TFIV     +I  R  S+ +   + L     + V       +   GL   +   +P + +
Sbjct: 41  TFIVLFVLYVIYLRRNSTTNVDWSSLGMRGGTFVPTNNNLSTAELGLSKDIREMLPVVIY 100

Query: 80  NREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQSTCPICRLPLQD 139
            +E+F  V+D+QCS+CLG+Y+ +E L+ MP CGH FH  CID+WL   +TCP+CRL L  
Sbjct: 101 -KESF-IVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIP 160

Query: 140 SSTTKPARPMT--VSRDQSFDGSEISTDHHSQ 167
             +   +   T  VS  ++ +G E ST   SQ
Sbjct: 161 KPSLDLSHQSTEIVSSIENSNGGEASTQPDSQ 190

[Close]

BLAST of Csor.00g256810 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-15
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 0


Query: 9   ITTVVGFGMSATFIVFICTRI--ICGR---LRSSQSNRLNYEIESRVDLEQQPESRASGL 68
           +  ++G   SA  +V   T I   C R     SS++  LN+  E      Q+  +   GL
Sbjct: 58  LIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGL 117

Query: 69  EPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRK 128
              +I +I   K+ +     V+ + CS+CL E+EE E LR++PKC H FH  CID WL+ 
Sbjct: 118 NESMIKSITVYKY-KSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKS 177

Query: 129 QSTCPICR 132
            S CP+CR
Sbjct: 178 HSNCPLCR 184

[Close]

BLAST of Csor.00g256810 vs. ExPASy Swiss-Prot
Match: Q9SN27 (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-15
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 78  REAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQSTCPICRLPLQDS 137
           +E+F +V D QCS+CLG+Y+ +E L+ MP CGH FH  CID+WL   +TCP+CRL L   
Sbjct: 87  KESF-TVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSL--- 146

Query: 138 STTKPARPMT------VSRDQSFDGSEISTDHHSQ 167
              KP+  ++      VS  ++ +G E ST   SQ
Sbjct: 147 -IPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQ 176

[Close]

BLAST of Csor.00g256810 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 4.9e-15
Identity = 43/118 (36.44%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 57  ESRASGLEPVLIAAIPTMKFNREAFN-SVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRS 116
           ES  +GL+  LI  I   K  +      +    CSICLGE+ E E LR++PKC H FH  
Sbjct: 122 ESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVV 181

Query: 117 CIDVWLRKQSTCPICRLPLQDSSTTKPARPMTV-------SRDQSFDGSEISTDHHSQ 167
           CID WL+  S CP+CR  +   +T +P   + V       S   S +G+ +  DH  +
Sbjct: 182 CIDRWLKSHSNCPLCRAKIIVPTTQQPEHHVVVMNLDRFTSNVGSAEGNVVVDDHREE 239

[Close]

BLAST of Csor.00g256810 vs. NCBI nr
Match: XP_022958959.1 (RING-H2 finger protein ATL7-like [Cucurbita moschata] >KAG6574779.1 RING-H2 finger protein ATL7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013359.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 412 bits (1059), Expect = 3.05e-145
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA 60
           MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA
Sbjct: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120
           SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW
Sbjct: 61  SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120

Query: 121 LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQTQLESVPVNPSVQREIETIR 203
           SNQTQLESVPVNPSVQREIETIR
Sbjct: 181 SNQTQLESVPVNPSVQREIETIR 203

[Close]

BLAST of Csor.00g256810 vs. NCBI nr
Match: XP_023548050.1 (RING-H2 finger protein ATL7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395 bits (1016), Expect = 1.10e-138
Identity = 197/203 (97.04%), Postives = 197/203 (97.04%), Query Frame = 0


Query: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA 60
           MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSN LNYEIESRVDLEQQP SRA
Sbjct: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNSLNYEIESRVDLEQQPGSRA 60

Query: 61  SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120
           SGLE VLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW
Sbjct: 61  SGLEQVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120

Query: 121 LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPICRLPLQ SS TKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPICRLPLQASSRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQTQLESVPVNPSVQREIETIR 203
           SNQTQLESVPVN SVQREIETIR
Sbjct: 181 SNQTQLESVPVNSSVQREIETIR 203

[Close]

BLAST of Csor.00g256810 vs. NCBI nr
Match: XP_004153610.1 (RING-H2 finger protein ATL5 [Cucumis sativus] >KGN46203.1 hypothetical protein Csa_004984 [Cucumis sativus])

HSP 1 Score: 372 bits (955), Expect = 2.19e-129
Identity = 177/203 (87.19%), Postives = 193/203 (95.07%), Query Frame = 0


Query: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA 60
           MTGSGMN ITTV+GFGMSATFIVF+CTRIICGRLRS+QSN  NYEIESR+DLEQQPESRA
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120
           SGLEPVLIAAIPTM F+REAF+S+EDAQCSICLGEYEEKEVLR+MPKCGH FH +CIDVW
Sbjct: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCP+CRLPLQDS  TKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQTQLESVPVNPSVQREIETIR 203
           SNQ+QL+ +PVNP+ QRE+ETI+
Sbjct: 181 SNQSQLQPIPVNPAAQREMETIQ 203

[Close]

BLAST of Csor.00g256810 vs. NCBI nr
Match: XP_008460164.1 (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo] >KAA0040031.1 RING-H2 finger protein ATL5-like [Cucumis melo var. makuwa])

HSP 1 Score: 371 bits (952), Expect = 6.29e-129
Identity = 178/203 (87.68%), Postives = 192/203 (94.58%), Query Frame = 0


Query: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA 60
           MTGSGMN ITTV+GFGMSATFIVF+CTRIICGRLRS+QSN  NYEIESR+DLEQQPESRA
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120
           SGLEPVLIAAIPT KF++EAF+S EDAQCSICLGEYEEKEVLR+MPKCGH FH +CIDVW
Sbjct: 61  SGLEPVLIAAIPTTKFDQEAFSSAEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPICRLPLQDS  TKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPICRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQTQLESVPVNPSVQREIETIR 203
           SNQ+QL+ +PVNPS QRE+ETI+
Sbjct: 181 SNQSQLQPIPVNPSAQREMETIQ 203

[Close]

BLAST of Csor.00g256810 vs. NCBI nr
Match: XP_023006692.1 (RING-H2 finger protein ATL52-like [Cucurbita maxima])

HSP 1 Score: 369 bits (948), Expect = 2.07e-128
Identity = 188/198 (94.95%), Postives = 188/198 (94.95%), Query Frame = 0


Query: 6   MNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRASGLEP 65
           MNFITTVVGFGMSATFIVFICTRIICGRL SSQSN LNYEIESRVD EQQPESRASGLEP
Sbjct: 1   MNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRASGLEP 60

Query: 66  VLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQS 125
           VLIAAIPTMKFNREAFNSVE AQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQS
Sbjct: 61  VLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQS 120

Query: 126 TCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNTSNQTQ 185
           TCPI  LPLQDSS TKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGP RSEGNTSNQTQ
Sbjct: 121 TCPIW-LPLQDSSRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPIRSEGNTSNQTQ 180

Query: 186 LESVPVNPSVQREIETIR 203
           LESV VNPSVQRE ETIR
Sbjct: 181 LESVSVNPSVQRERETIR 197

[Close]

BLAST of Csor.00g256810 vs. ExPASy TrEMBL
Match: A0A6J1H6L8 (RING-H2 finger protein ATL7-like OS=Cucurbita moschata OX=3662 GN=LOC111460093 PE=4 SV=1)

HSP 1 Score: 412 bits (1059), Expect = 1.48e-145
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA 60
           MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA
Sbjct: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120
           SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW
Sbjct: 61  SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120

Query: 121 LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQTQLESVPVNPSVQREIETIR 203
           SNQTQLESVPVNPSVQREIETIR
Sbjct: 181 SNQTQLESVPVNPSVQREIETIR 203

[Close]

BLAST of Csor.00g256810 vs. ExPASy TrEMBL
Match: A0A0A0K9N8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074560 PE=4 SV=1)

HSP 1 Score: 372 bits (955), Expect = 1.06e-129
Identity = 177/203 (87.19%), Postives = 193/203 (95.07%), Query Frame = 0


Query: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA 60
           MTGSGMN ITTV+GFGMSATFIVF+CTRIICGRLRS+QSN  NYEIESR+DLEQQPESRA
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120
           SGLEPVLIAAIPTM F+REAF+S+EDAQCSICLGEYEEKEVLR+MPKCGH FH +CIDVW
Sbjct: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCP+CRLPLQDS  TKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQTQLESVPVNPSVQREIETIR 203
           SNQ+QL+ +PVNP+ QRE+ETI+
Sbjct: 181 SNQSQLQPIPVNPAAQREMETIQ 203

[Close]

BLAST of Csor.00g256810 vs. ExPASy TrEMBL
Match: A0A5A7TEE5 (RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G003170 PE=4 SV=1)

HSP 1 Score: 371 bits (952), Expect = 3.04e-129
Identity = 178/203 (87.68%), Postives = 192/203 (94.58%), Query Frame = 0


Query: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA 60
           MTGSGMN ITTV+GFGMSATFIVF+CTRIICGRLRS+QSN  NYEIESR+DLEQQPESRA
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120
           SGLEPVLIAAIPT KF++EAF+S EDAQCSICLGEYEEKEVLR+MPKCGH FH +CIDVW
Sbjct: 61  SGLEPVLIAAIPTTKFDQEAFSSAEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPICRLPLQDS  TKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPICRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQTQLESVPVNPSVQREIETIR 203
           SNQ+QL+ +PVNPS QRE+ETI+
Sbjct: 181 SNQSQLQPIPVNPSAQREMETIQ 203

[Close]

BLAST of Csor.00g256810 vs. ExPASy TrEMBL
Match: A0A1S3CBG3 (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC103499057 PE=4 SV=1)

HSP 1 Score: 371 bits (952), Expect = 3.04e-129
Identity = 178/203 (87.68%), Postives = 192/203 (94.58%), Query Frame = 0


Query: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA 60
           MTGSGMN ITTV+GFGMSATFIVF+CTRIICGRLRS+QSN  NYEIESR+DLEQQPESRA
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120
           SGLEPVLIAAIPT KF++EAF+S EDAQCSICLGEYEEKEVLR+MPKCGH FH +CIDVW
Sbjct: 61  SGLEPVLIAAIPTTKFDQEAFSSAEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPICRLPLQDS  TKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPICRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQTQLESVPVNPSVQREIETIR 203
           SNQ+QL+ +PVNPS QRE+ETI+
Sbjct: 181 SNQSQLQPIPVNPSAQREMETIQ 203

[Close]

BLAST of Csor.00g256810 vs. ExPASy TrEMBL
Match: A0A6J1KWJ1 (RING-H2 finger protein ATL52-like OS=Cucurbita maxima OX=3661 GN=LOC111499351 PE=4 SV=1)

HSP 1 Score: 369 bits (948), Expect = 1.00e-128
Identity = 188/198 (94.95%), Postives = 188/198 (94.95%), Query Frame = 0


Query: 6   MNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRASGLEP 65
           MNFITTVVGFGMSATFIVFICTRIICGRL SSQSN LNYEIESRVD EQQPESRASGLEP
Sbjct: 1   MNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRASGLEP 60

Query: 66  VLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQS 125
           VLIAAIPTMKFNREAFNSVE AQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQS
Sbjct: 61  VLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQS 120

Query: 126 TCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNTSNQTQ 185
           TCPI  LPLQDSS TKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGP RSEGNTSNQTQ
Sbjct: 121 TCPIW-LPLQDSSRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPIRSEGNTSNQTQ 180

Query: 186 LESVPVNPSVQREIETIR 203
           LESV VNPSVQRE ETIR
Sbjct: 181 LESVSVNPSVQRERETIR 197

[Close]

BLAST of Csor.00g256810 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.8e-18
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 59  RASGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCID 118
           R  GL P +I++I   +++++    VE   CS+CL E+EE+E LR++PKC H FH  CID
Sbjct: 188 RTIGLNPTVISSIKVCQYSKKD-GVVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCID 247

Query: 119 VWLRKQSTCPICRLPLQDSST 140
            WLR  + CP+CR P+ +++T
Sbjct: 248 TWLRSHTNCPLCRAPIVEANT 267

[Close]

BLAST of Csor.00g256810 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 85.5 bits (210), Expect = 5.4e-17
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 55  QPESRASGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHR 114
           Q  S  S L+P ++  IP   ++ +   S  + +CS+CL E+EE +  R++PKCGH FH 
Sbjct: 80  QSSSSLSPLDPTVLEKIPIFVYSVKTHESPLE-ECSVCLSEFEEDDEGRVLPKCGHVFHV 139

Query: 115 SCIDVWLRKQSTCPICRLPLQDSSTTKPARPMT 148
            CID W R +S+CP+CR P+Q      PA+P+T
Sbjct: 140 DCIDTWFRSRSSCPLCRAPVQ------PAQPVT 165

[Close]

BLAST of Csor.00g256810 vs. TAIR 10
Match: AT4G10150.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-16
Identity = 53/152 (34.87%), Postives = 80/152 (52.63%), Query Frame = 0


Query: 20  TFIVFICTRIICGRLRSSQS---NRLNYEIESRVDLEQQPESRASGLEPVLIAAIPTMKF 79
           TFIV     +I  R  S+ +   + L     + V       +   GL   +   +P + +
Sbjct: 41  TFIVLFVLYVIYLRRNSTTNVDWSSLGMRGGTFVPTNNNLSTAELGLSKDIREMLPVVIY 100

Query: 80  NREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQSTCPICRLPLQD 139
            +E+F  V+D+QCS+CLG+Y+ +E L+ MP CGH FH  CID+WL   +TCP+CRL L  
Sbjct: 101 -KESF-IVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIP 160

Query: 140 SSTTKPARPMT--VSRDQSFDGSEISTDHHSQ 167
             +   +   T  VS  ++ +G E ST   SQ
Sbjct: 161 KPSLDLSHQSTEIVSSIENSNGGEASTQPDSQ 190

[Close]

BLAST of Csor.00g256810 vs. TAIR 10
Match: AT4G10160.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-16
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 78  REAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQSTCPICRLPLQDS 137
           +E+F +V D QCS+CLG+Y+ +E L+ MP CGH FH  CID+WL   +TCP+CRL L   
Sbjct: 87  KESF-TVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSL--- 146

Query: 138 STTKPARPMT------VSRDQSFDGSEISTDHHSQ 167
              KP+  ++      VS  ++ +G E ST   SQ
Sbjct: 147 -IPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQ 176

[Close]

BLAST of Csor.00g256810 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-16
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 0


Query: 9   ITTVVGFGMSATFIVFICTRI--ICGR---LRSSQSNRLNYEIESRVDLEQQPESRASGL 68
           +  ++G   SA  +V   T I   C R     SS++  LN+  E      Q+  +   GL
Sbjct: 58  LIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGL 117

Query: 69  EPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRK 128
              +I +I   K+ +     V+ + CS+CL E+EE E LR++PKC H FH  CID WL+ 
Sbjct: 118 NESMIKSITVYKY-KSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKS 177

Query: 129 QSTCPICR 132
            S CP+CR
Sbjct: 178 HSNCPLCR 184

The following BLAST results are available for this feature:

BLAST of Csor.00g256810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZJ6	7.6e-16	41.94	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
Q9SN28	1.7e-15	34.87	RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1	[more]
Q9LF64	2.2e-15	35.94	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9SN27	2.2e-15	44.21	E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 ...	[more]
P0C041	4.9e-15	36.44	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]

BLAST of Csor.00g256810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958959.1	3.05e-145	100.00	RING-H2 finger protein ATL7-like [Cucurbita moschata] >KAG6574779.1 RING-H2 fing...	[more]
XP_023548050.1	1.10e-138	97.04	RING-H2 finger protein ATL7-like [Cucurbita pepo subsp. pepo]	[more]
XP_004153610.1	2.19e-129	87.19	RING-H2 finger protein ATL5 [Cucumis sativus] >KGN46203.1 hypothetical protein C...	[more]
XP_008460164.1	6.29e-129	87.68	PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo] >KAA0040031.1 RING-H2...	[more]
XP_023006692.1	2.07e-128	94.95	RING-H2 finger protein ATL52-like [Cucurbita maxima]	[more]

BLAST of Csor.00g256810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6L8	1.48e-145	100.00	RING-H2 finger protein ATL7-like OS=Cucurbita moschata OX=3662 GN=LOC111460093 P...	[more]
A0A0A0K9N8	1.06e-129	87.19	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074560 P...	[more]
A0A5A7TEE5	3.04e-129	87.68	RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3CBG3	3.04e-129	87.68	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC103499057 PE=4 SV...	[more]
A0A6J1KWJ1	1.00e-128	94.95	RING-H2 finger protein ATL52-like OS=Cucurbita maxima OX=3661 GN=LOC111499351 PE...	[more]

BLAST of Csor.00g256810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33565.1	2.8e-18	44.44	RING/U-box superfamily protein	[more]
AT3G62690.1	5.4e-17	41.94	AtL5	[more]
AT4G10150.1	1.2e-16	34.87	RING/U-box superfamily protein	[more]
AT4G10160.1	1.6e-16	44.21	RING/U-box superfamily protein	[more]
AT5G17600.1	1.6e-16	35.94	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 89..130 e-value: 3.3E-9 score: 46.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 88..131 e-value: 7.3E-15 score: 55.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 89..131 score: 13.212175
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 65..140 e-value: 1.0E-22 score: 81.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..203
None	No IPR available	PANTHER	PTHR47035	OS11G0150450 PROTEIN	coord: 1..193
None	No IPR available	PANTHER	PTHR47035:SF4	OS02G0676500 PROTEIN	coord: 1..193
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 88..131 e-value: 4.34916E-19 score: 75.0309
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 79..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g256810.m01	Csor.00g256810.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane