Csor.00g256780 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g256780
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	LysM domain-containing protein
Location	Csor_Chr17: 60498 .. 60872 (-)
RNA-Seq Expression	Csor.00g256780
Synteny	Csor.00g256780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTAGCGTTCAATTCCTTGTGGTCTGCTCCACTTCTCGAAACCGCCATAACTGACCTCCACCTCCTCTCCCTCTTTTTATACCTAAGAAACCAAATACCAAATTCATCTTCTCCCATGGCTTCCTCAACATCCTGCTGCTCTGTTTTCATTCTCATGGCGCTCATGCTCCTCGCCTCTGCGCAATCCGGTCCCTGCGACGACATCTACCTCGTCAGAGAAGGCGAGTCGCTGCACTCTATCAGCGCCAAGTGCGACGATCCTTTCATAGTCGACTACAATCCGCAGATTCAGGATTCCGATGATGTCTTTCCAGGACTACTTATCAAAATTACGCCATCTCTTAACTCCAGGAAGCTCTTATTCAGGTAG

mRNA sequence

ATGGTGGTAGCGTTCAATTCCTTGTGGTCTGCTCCACTTCTCGAAACCGCCATAACTGACCTCCACCTCCTCTCCCTCTTTTTATACCTAAGAAACCAAATACCAAATTCATCTTCTCCCATGGCTTCCTCAACATCCTGCTGCTCTGTTTTCATTCTCATGGCGCTCATGCTCCTCGCCTCTGCGCAATCCGGTCCCTGCGACGACATCTACCTCGTCAGAGAAGGCGAGTCGCTGCACTCTATCAGCGCCAAGTGCGACGATCCTTTCATAGTCGACTACAATCCGCAGATTCAGGATTCCGATGATGTCTTTCCAGGACTACTTATCAAAATTACGCCATCTCTTAACTCCAGGAAGCTCTTATTCAGGTAG

Coding sequence (CDS)

ATGGTGGTAGCGTTCAATTCCTTGTGGTCTGCTCCACTTCTCGAAACCGCCATAACTGACCTCCACCTCCTCTCCCTCTTTTTATACCTAAGAAACCAAATACCAAATTCATCTTCTCCCATGGCTTCCTCAACATCCTGCTGCTCTGTTTTCATTCTCATGGCGCTCATGCTCCTCGCCTCTGCGCAATCCGGTCCCTGCGACGACATCTACCTCGTCAGAGAAGGCGAGTCGCTGCACTCTATCAGCGCCAAGTGCGACGATCCTTTCATAGTCGACTACAATCCGCAGATTCAGGATTCCGATGATGTCTTTCCAGGACTACTTATCAAAATTACGCCATCTCTTAACTCCAGGAAGCTCTTATTCAGGTAG

Protein sequence

MVVAFNSLWSAPLLETAITDLHLLSLFLYLRNQIPNSSSPMASSTSCCSVFILMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR

Homology

[Close]

BLAST of Csor.00g256780 vs. NCBI nr
Match: KAG6574776.1 (hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (623), Expect = 2.41e-81
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MVVAFNSLWSAPLLETAITDLHLLSLFLYLRNQIPNSSSPMASSTSCCSVFILMALMLLA 60
           MVVAFNSLWSAPLLETAITDLHLLSLFLYLRNQIPNSSSPMASSTSCCSVFILMALMLLA
Sbjct: 1   MVVAFNSLWSAPLLETAITDLHLLSLFLYLRNQIPNSSSPMASSTSCCSVFILMALMLLA 60

Query: 61  SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK 120
           SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK
Sbjct: 61  SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK 120

Query: 121 LLFR 124
           LLFR
Sbjct: 121 LLFR 124

[Close]

BLAST of Csor.00g256780 vs. NCBI nr
Match: XP_022959284.1 (uncharacterized protein LOC111460313 [Cucurbita moschata])

HSP 1 Score: 243 bits (619), Expect = 1.28e-80
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MVVAFNSLWSAPLLETAITDLHLLSLFLYLRNQIPNSSSPMASSTSCCSVFILMALMLLA 60
           MVVAFNSLWSAPLLETAITDLHLLSLFLYLRNQIPNSSSPMASSTSCCSVFI MALMLLA
Sbjct: 1   MVVAFNSLWSAPLLETAITDLHLLSLFLYLRNQIPNSSSPMASSTSCCSVFIFMALMLLA 60

Query: 61  SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK 120
           SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK
Sbjct: 61  SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK 120

Query: 121 LLFR 124
           LLFR
Sbjct: 121 LLFR 124

[Close]

BLAST of Csor.00g256780 vs. NCBI nr
Match: XP_023006696.1 (uncharacterized protein LOC111499354 [Cucurbita maxima])

HSP 1 Score: 229 bits (584), Expect = 2.79e-75
Identity = 117/124 (94.35%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 1   MVVAFNSLWSAPLLETAITDLHLLSLFLYLRNQIPNSSSPMASSTSCCSVFILMALMLLA 60
           MVVAFNSLWSAP LETAITDLHLLSLFLY +NQIPNSSSPMASS SC SVFI MALMLLA
Sbjct: 1   MVVAFNSLWSAPFLETAITDLHLLSLFLYPKNQIPNSSSPMASSISCYSVFIFMALMLLA 60

Query: 61  SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK 120
           SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK
Sbjct: 61  SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK 120

Query: 121 LLFR 124
           L FR
Sbjct: 121 LFFR 124

[Close]

BLAST of Csor.00g256780 vs. NCBI nr
Match: KAG7013356.1 (hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167 bits (424), Expect = 1.51e-51
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 41  MASSTSCCSVFILMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 100
           MASSTSCCSVFI MALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD
Sbjct: 1   MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 60

Query: 101 SDDVFPGLLIKITPSLNSRKLLFR 124
           SDDVFPGLLIKITPSLNSRKLLFR
Sbjct: 61  SDDVFPGLLIKITPSLNSRKLLFR 84

[Close]

BLAST of Csor.00g256780 vs. NCBI nr
Match: KGN46208.1 (hypothetical protein Csa_005039 [Cucumis sativus])

HSP 1 Score: 110 bits (276), Expect = 5.10e-29
Identity = 58/77 (75.32%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 49  SVFI-LMALMLL-ASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFP 108
           SVF+ +MAL+++ ASA+S PCDDIY+V+EGE+LH+ISAKC DPFIVD NP IQDSDDVFP
Sbjct: 6   SVFVTVMALIIVVASAESRPCDDIYVVKEGETLHTISAKCGDPFIVDNNPHIQDSDDVFP 65

Query: 109 GLLIKITPSL-NSRKLL 122
           GLLI+ITP+L NSRKLL
Sbjct: 66  GLLIQITPTLINSRKLL 82

[Close]

BLAST of Csor.00g256780 vs. ExPASy TrEMBL
Match: A0A6J1H7L7 (uncharacterized protein LOC111460313 OS=Cucurbita moschata OX=3662 GN=LOC111460313 PE=4 SV=1)

HSP 1 Score: 243 bits (619), Expect = 6.20e-81
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MVVAFNSLWSAPLLETAITDLHLLSLFLYLRNQIPNSSSPMASSTSCCSVFILMALMLLA 60
           MVVAFNSLWSAPLLETAITDLHLLSLFLYLRNQIPNSSSPMASSTSCCSVFI MALMLLA
Sbjct: 1   MVVAFNSLWSAPLLETAITDLHLLSLFLYLRNQIPNSSSPMASSTSCCSVFIFMALMLLA 60

Query: 61  SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK 120
           SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK
Sbjct: 61  SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK 120

Query: 121 LLFR 124
           LLFR
Sbjct: 121 LLFR 124

[Close]

BLAST of Csor.00g256780 vs. ExPASy TrEMBL
Match: A0A6J1KYG6 (uncharacterized protein LOC111499354 OS=Cucurbita maxima OX=3661 GN=LOC111499354 PE=4 SV=1)

HSP 1 Score: 229 bits (584), Expect = 1.35e-75
Identity = 117/124 (94.35%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 1   MVVAFNSLWSAPLLETAITDLHLLSLFLYLRNQIPNSSSPMASSTSCCSVFILMALMLLA 60
           MVVAFNSLWSAP LETAITDLHLLSLFLY +NQIPNSSSPMASS SC SVFI MALMLLA
Sbjct: 1   MVVAFNSLWSAPFLETAITDLHLLSLFLYPKNQIPNSSSPMASSISCYSVFIFMALMLLA 60

Query: 61  SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK 120
           SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK
Sbjct: 61  SAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRK 120

Query: 121 LLFR 124
           L FR
Sbjct: 121 LFFR 124

[Close]

BLAST of Csor.00g256780 vs. ExPASy TrEMBL
Match: A0A0A0K9P3 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074605 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 2.47e-29
Identity = 58/77 (75.32%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 49  SVFI-LMALMLL-ASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFP 108
           SVF+ +MAL+++ ASA+S PCDDIY+V+EGE+LH+ISAKC DPFIVD NP IQDSDDVFP
Sbjct: 6   SVFVTVMALIIVVASAESRPCDDIYVVKEGETLHTISAKCGDPFIVDNNPHIQDSDDVFP 65

Query: 109 GLLIKITPSL-NSRKLL 122
           GLLI+ITP+L NSRKLL
Sbjct: 66  GLLIQITPTLINSRKLL 82

[Close]

BLAST of Csor.00g256780 vs. ExPASy TrEMBL
Match: A0A5D3DLK6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00150 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 4.97e-29
Identity = 59/77 (76.62%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 49  SVFI-LMAL-MLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFP 108
           SVFI +MAL M++ASA+S PC+DIY+V+EGE+LH+ISAKC DPFIVD NP IQDSDDVFP
Sbjct: 6   SVFITVMALIMVVASAESKPCNDIYVVKEGETLHTISAKCRDPFIVDNNPHIQDSDDVFP 65

Query: 109 GLLIKITPSL-NSRKLL 122
           GLLI+ITP+L NSRKLL
Sbjct: 66  GLLIQITPTLINSRKLL 82

[Close]

BLAST of Csor.00g256780 vs. ExPASy TrEMBL
Match: A0A7J7I710 (LysM domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_001137 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.29e-22
Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 37  SSSPMASSTSCCSVFILMALMLLASAQSG----------------PCDDIYLVREGESLH 96
           SSS MA +TS     +L+ALM++ + + G                PCD+IY+V EGE+LH
Sbjct: 3   SSSSMADATSWYCAMVLVALMMMGTVKEGSLVTDEPVRGKHFLNRPCDEIYVVGEGETLH 62

Query: 97  SISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKL 121
           +IS KC DPFIV+ NP I D DDVFPGL+IKITPS   RKL
Sbjct: 63  TISDKCGDPFIVEKNPHIHDPDDVFPGLVIKITPS-KPRKL 102

[Close]

BLAST of Csor.00g256780 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 84.0 bits (206), Expect = 9.5e-17
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 37  SSSPMASSTSCCSVFILMALMLLASAQSG--------------PCDDIYLVREGESLHSI 96
           S +  +  ++ CS  +L++L+LL S +                PC++IY+V EGE+LH+I
Sbjct: 4   SRTGSSDMSAWCSAVVLLSLILLLSVRENNASNSIRGSQFSTKPCEEIYIVGEGETLHTI 63

Query: 97  SAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKL 122
             KC DPFIV+ NP I D DDVFPGL++KI P   +RKL
Sbjct: 64  GDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPFYFNRKL 102

[Close]

BLAST of Csor.00g256780 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-14
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 67  CDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSL 117
           CD+IY V+EGE+L +IS KC DP+IV+ NP I D DD+FPGLLI+ITPSL
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPSL 109

[Close]

BLAST of Csor.00g256780 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-14
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 66  PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKI 113
           PC+++Y+V EG++LHSIS KC DPFIV+ NP I D DDVFPGLLIK+
Sbjct: 58  PCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

The following BLAST results are available for this feature:

BLAST of Csor.00g256780 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g256780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574776.1	2.41e-81	100.00	hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022959284.1	1.28e-80	99.19	uncharacterized protein LOC111460313 [Cucurbita moschata]	[more]
XP_023006696.1	2.79e-75	94.35	uncharacterized protein LOC111499354 [Cucurbita maxima]	[more]
KAG7013356.1	1.51e-51	98.81	hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN46208.1	5.10e-29	75.32	hypothetical protein Csa_005039 [Cucumis sativus]	[more]

BLAST of Csor.00g256780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7L7	6.20e-81	99.19	uncharacterized protein LOC111460313 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]
A0A6J1KYG6	1.35e-75	94.35	uncharacterized protein LOC111499354 OS=Cucurbita maxima OX=3661 GN=LOC111499354...	[more]
A0A0A0K9P3	2.47e-29	75.32	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074605 PE=4 S...	[more]
A0A5D3DLK6	4.97e-29	76.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7J7I710	1.29e-22	51.49	LysM domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_001137 PE=4...	[more]

BLAST of Csor.00g256780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62150.1	9.5e-17	43.43	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	1.2e-14	68.00	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	2.6e-14	68.09	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 61..120 e-value: 7.7E-6 score: 27.3
None	No IPR available	PANTHER	PTHR33648:SF23	LYSM DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 66..122
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 66..122
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 70..112 e-value: 3.65454E-4 score: 33.9981

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g256780.m01	Csor.00g256780.m01	mRNA