Csor.00g256620 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g256620
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr05: 9207394 .. 9210640 (+)
RNA-Seq ExpressionCsor.00g256620
SyntenyCsor.00g256620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACGAGAAGGGACGAACGAAAAACCATTGATGAATGGGTAGAAGAATTCGAGTTTCGTGGACTTCGCTGCACCAGACCGAAGAACAATTTGCTTCTCTTCGTGTTAAATTTGGCACGAGAAAATGGCGCGGTGGCGAAGCCTTTTTATAGTGTGTAAATTCTACAACTTCCACCGCACTCCAAAATGGAACTGAAATTGCACTATGCACCACTAGTGATATTTAATTTACAAAATTTCCCCATTATTTTAGCAAATTGCAATTAACCCCGATATTTTCTGAAAATTGGTATTCTTTCCACGTATTATATTCCTGTATTTCCAATAATCCTCTTTTGGTCACGATAAATTTCAAATTAATTATTTTGGTTGTTAAAAAAACAATAATAACTAAAATTTAGATATTAAAATAAATTCCCACCAAAATCAACCGTTCTTTTTTAACTTTGTTATATTTTTAATTTTTTAATTCATTATTAAAAGTGTATTTTATTTTTTTTATTTGTACTAATAATAACATTTTAAAGGTTAAAAAATATTATACAGACAAAAATTATTTATCTACAATATCGCATTTATTTTTATTTACTTCGTCTCATTTACTACAACCTATATTTGATCGAATGTTTCATATTTTTTAAATTCGTAACTTTTTTTAAAAAAAAGTTGCTAATTTATTTAAATTTTAATTTAAAAATATATATTTAAGGGTTGTTTCCAAACTTTTAACATTTGAGTATAATAATTACATTTAAAAAAAAATTAAATAAAAATAGTTAATATCTCATTTCAAAAACACTTTTAAATTTTTAAAAATTATATTAATTTTCTTTAAAACTTAAAATACTCCAATATAGAATTTAATTTTGTTGTAATTCGAAAAATGAATATCAAGTAAATGTAAAATTACGATAATAACCTTAAAATATATAAACAACCTTAAGTATTAAAAAAAATTAAAATTAAACTTAAATAGTAAATTTTGTTGGTACAACAAACCATGATGAGAAAAAAATGTCTTTATTTTAAACCTAAATTATATTTATTATAAGGAAAAAAGGTAGTTTAGGATAAAACAAAATTCTAAAATTAAATTCAAATAAAATTCGACATGTCGTTCGAGGATGGACTGATCGGTAATCTGCAACTTGGATGGGCCGCTCTTCTCGTCCCTTTTAAAAGGAGCGGCGGCAAAGGCAAACCCAAGAACTTGGGGGTTTTGTAATTTCGTTGCTGCCTTCATGGCGAGTTTCGTTTCTCTGAGCTTCTCCGTTCCACAGGTCATTTTCAAGGTAAATTCCGCTTCTAAACGCCTTCCCTCGTTAATCACGTCTGTAGCTGCGGAATTTTCTTCAATATGTACTCTGATTCTTCTAATGTTCAACGTAACGGAGAGCTTCATTCGAGGTAGCCTGTTTAGGTTGCTGCAATTGACCTTGCTGTTTTATTCTAGCATTTGTAAGACGAATGCGTTTTTTCTGTTTCGCATTATGCTTTCAGGTGGACCGGCCATAAGAAACTGAGTTCTGAGAATTGTTTTTGGTTGGACATTTTTGTTTGGATGTCTGGAAAGTGTTTGGTGATTATCCGTGTTAAAATGGATTGATAGGGTGAATAGTTCTTTCTTCTGGAAAGATTATCGTTAGAAAATTAAGTTCTGTGAGATTATATAAGGATTAGCGAGCATGTTCTAATTTCGTTATGATCGATTAATGAGCAAATTTGGCGCGCTTCATACATAGTTCCATTTCCAACTGCAATTTTTGTAAGTAGCATCTTCGAAACATCAGTCCAGTTGTGAAAATTATTGTCTGAAGCTCAGTCGTTAATACTAAAATGCTTGGAAAATGATTGAAGAAATAAGAATGGCTGTTTATTTCTCTAGATTTCAAGATTTTGATCGCACACTGACGTGTTTTTCCTACTTATCTTTGAACGATGCGTCAGGAAATGCCACCATGGAAACTGGCTAAAGTCACAGTAGTTCCAAGGCGAGCTGGAACAGGTTTGATTCTCATTTTTTCTATGATCAATAATTAGTGGAAATCACAACCATTTTGAGTCATTTTAACTTAAAATTTCTTTAGTTATATCTTTTGTTCATCTTGCTCCACTGTAAAATTGATCAAAACTAGAAAAGGTAATGATTGAGAATTGTACTACTAATGTAATATAGTCTTGTACCCATTTATTATATCATTACTAGATTGAGAAAATTTTGGATTGCTGATGATATGCATTGCATTTGCAGCTTCGAAGTTTGTGCTATCCTGTTGCACAAATAAATCCATATCTAATTGGGAAAACTGCCATCCAGTACGGTTAACTTCAAGACCTTTTTGGGGAATAGTTTCTTCTAGTTCCAGGAATTTGGTATTAGCTGGCTACTGGATAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTGTTGATCGGATTACTTAACTATTCAAACTTTGAATTCCATTTCTTGATTTTCTTTTGTTTACTATGTCTGATCTTAGTCGAATGCATCAGTCACTTGCTTTCTCCAAAATATCTGAAACTGCTTCCTCTTTGTGAAATTCATATCTCGTTTAGTAACTTGATTGCTGAGAGGTTAATCAGAGTTCTAGATTTAGGATTCGATCCTCATTGCCATGACAAATGAGGATGATACATTCTATTAAATATGAAGCTAGCAGGAAACTGCAGCTAAGAACAGGTGTCTATCATCTTCTCCCATGAACCCGAGTAAAGAGGTTAAGTGTGAGATCTCACATTGATTAGAGAGAGGAATGAGTGTCAACAAGGATGCTGGGCCCCAAAAGGGGTGGATTGTGAGATCCCACATCGATTGGAGATGAGAACGACATCGATTGGAATGTGGAACGAGTATCAGGGGCCCTGCGAGGGGGTGGATTGTGAGATCTCACATCGATTAGGGAGGAGAACGAAACATTATTTACAAGGGTGAGGAAACCTCTCCCTAGACTTTTAAAACTTTGAGGGGAAGCCTGAAAGGGAAAACCCAAATAAAACAATATCCACTAACGGTGGGTTAGTTGTATGAATTCTGGTGGGTTAGTTGTATGAATTCTGAATGAATTCTGAAGGGTCTATTTTGTTAGATGATAAGAATCAAGAATTTGATTTACAAGATTTGGTTGTTGCAGTCTGCTGACCATCTAATATATATCCTTTTGTCATTTGTTATACAGAAATAGAAAGAAAATTGCCCGAGTTGCACAATTAG

mRNA sequence

ATGACTACGAGAAGGGACGAACGAAAAACCATTGATGAATGGGTAGAAGAATTCGAGTTTCGTGGACTTCGCTGCACCAGACCGAAGAACAATTTGCTTCTCTTCGTGTTAAATTTGGCACGAGAAAATGGCGCGGTGGCGAAGCCTTTTTATAGTGTGTCATTTTCAAGAGCTTCATTCGAGGAAATGCCACCATGGAAACTGGCTAAAGTCACAGTAGTTCCAAGGCGAGCTGGAACAGAAATAGAAAGAAAATTGCCCGAGTTGCACAATTAG

Coding sequence (CDS)

ATGACTACGAGAAGGGACGAACGAAAAACCATTGATGAATGGGTAGAAGAATTCGAGTTTCGTGGACTTCGCTGCACCAGACCGAAGAACAATTTGCTTCTCTTCGTGTTAAATTTGGCACGAGAAAATGGCGCGGTGGCGAAGCCTTTTTATAGTGTGTCATTTTCAAGAGCTTCATTCGAGGAAATGCCACCATGGAAACTGGCTAAAGTCACAGTAGTTCCAAGGCGAGCTGGAACAGAAATAGAAAGAAAATTGCCCGAGTTGCACAATTAG

Protein sequence

MTTRRDERKTIDEWVEEFEFRGLRCTRPKNNLLLFVLNLARENGAVAKPFYSVSFSRASFEEMPPWKLAKVTVVPRRAGTEIERKLPELHN
Homology
[Close]
BLAST of Csor.00g256620 vs. NCBI nr
Match: KAG6599225.1 (hypothetical protein SDJN03_09003, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187 bits (476), Expect = 5.70e-60
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MTTRRDERKTIDEWVEEFEFRGLRCTRPKNNLLLFVLNLARENGAVAKPFYSVSFSRASF 60
          MTTRRDERKTIDEWVEEFEFRGLRCTRPKNNLLLFVLNLARENGAVAKPFYSVSFSRASF
Sbjct: 1  MTTRRDERKTIDEWVEEFEFRGLRCTRPKNNLLLFVLNLARENGAVAKPFYSVSFSRASF 60

Query: 61 EEMPPWKLAKVTVVPRRAGTEIERKLPELHN 91
          EEMPPWKLAKVTVVPRRAGTEIERKLPELHN
Sbjct: 61 EEMPPWKLAKVTVVPRRAGTEIERKLPELHN 91

[Close]
BLAST of Csor.00g256620 vs. NCBI nr
Match: XP_022946526.1 (uncharacterized protein LOC111450562 [Cucurbita moschata])

HSP 1 Score: 50.8 bits (120), Expect = 1.09e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 50 FYSVSFS--RASFEEMPPWKLAKVTVVPRRAGT 80
          F S+SFS  +  F+EMPPWKLAKVTVVPRRAGT
Sbjct: 4  FVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGT 36

[Close]
BLAST of Csor.00g256620 vs. NCBI nr
Match: XP_023545344.1 (uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 50.8 bits (120), Expect = 1.12e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 50 FYSVSFS--RASFEEMPPWKLAKVTVVPRRAGT 80
          F S+SFS  +  F+EMPPWKLAKVTVVPRRAGT
Sbjct: 4  FVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGT 36

[Close]
BLAST of Csor.00g256620 vs. NCBI nr
Match: XP_022999037.1 (uncharacterized protein LOC111493548 [Cucurbita maxima])

HSP 1 Score: 50.8 bits (120), Expect = 1.12e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 50 FYSVSFS--RASFEEMPPWKLAKVTVVPRRAGT 80
          F S+SFS  +  F+EMPPWKLAKVTVVPRRAGT
Sbjct: 4  FVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGT 36

[Close]
BLAST of Csor.00g256620 vs. NCBI nr
Match: TYK13803.1 (hypothetical protein E5676_scaffold488G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 46.6 bits (109), Expect = 5.02e-04
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 50 FYSVSFS--RASFEEMPPWKLAKVTVVPRRAGTEIERKLP 87
          F S+SFS  + + +E+PPWKLAK TVV RRAGT ++  LP
Sbjct: 4  FVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTALKLVLP 43

[Close]
BLAST of Csor.00g256620 vs. ExPASy TrEMBL
Match: A0A6J1G3X3 (uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC111450562 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.30e-06
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 50 FYSVSFS--RASFEEMPPWKLAKVTVVPRRAGT 80
          F S+SFS  +  F+EMPPWKLAKVTVVPRRAGT
Sbjct: 4  FVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGT 36

[Close]
BLAST of Csor.00g256620 vs. ExPASy TrEMBL
Match: A0A6J1K9Q0 (uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.41e-06
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 50 FYSVSFS--RASFEEMPPWKLAKVTVVPRRAGT 80
          F S+SFS  +  F+EMPPWKLAKVTVVPRRAGT
Sbjct: 4  FVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGT 36

[Close]
BLAST of Csor.00g256620 vs. ExPASy TrEMBL
Match: A0A5D3CPK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00650 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.43e-04
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 50 FYSVSFS--RASFEEMPPWKLAKVTVVPRRAGTEIERKLP 87
          F S+SFS  + + +E+PPWKLAK TVV RRAGT ++  LP
Sbjct: 4  FVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTALKLVLP 43

[Close]
BLAST of Csor.00g256620 vs. ExPASy TrEMBL
Match: A0A5A7U1B8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00850 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.56e-04
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 50 FYSVSFS--RASFEEMPPWKLAKVTVVPRRAGTEIERKLP 87
          F S+SFS  + + +E+PPWKLAK TVV RRAGT  +  LP
Sbjct: 4  FVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTASKLVLP 43

The following BLAST results are available for this feature:
BLAST of Csor.00g256620 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g256620 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6599225.15.70e-60100.00hypothetical protein SDJN03_09003, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022946526.11.09e-0575.76uncharacterized protein LOC111450562 [Cucurbita moschata][more]
XP_023545344.11.12e-0575.76uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022999037.11.12e-0575.76uncharacterized protein LOC111493548 [Cucurbita maxima][more]
TYK13803.15.02e-0457.50hypothetical protein E5676_scaffold488G00650 [Cucumis melo var. makuwa][more]
BLAST of Csor.00g256620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G3X35.30e-0675.76uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC1114505... [more]
A0A6J1K9Q05.41e-0675.76uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548... [more]
A0A5D3CPK72.43e-0457.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U1B89.56e-0457.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Csor.00g256620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g256620.m01Csor.00g256620.m01mRNA