Csor.00g256490 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g256490
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	E3 ubiquitin-protein ligase RNF126-like
Location	Csor_Chr03: 1385551 .. 1386216 (+)
RNA-Seq Expression	Csor.00g256490
Synteny	Csor.00g256490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAACCCCAACACTCTGTCTCTCCAATACTGCATCCACACCCACCCCCGCAACACCACCGGCGTAGCCACCGACGCCCAACCCATGCAATACGCCGAGCTCCGATTAGCCTATTCCAACCAATTCGTCTCTCGATCCTCCAACCAACTCCTCCAACAAACCCCCCAAACCCTAATCTCCGATGCTCTCTTACCTCTGTTTCTCCGAGACCTTCAACACCCGCCGTTCCTTTCCCACTTCTTGGTCCTTCAATTTCTCTCTACCTTCAACATCTCCACCGCCTCCTCCCACGCCATTTTCGATGACATCGCCACATTCGCCCTCGAATTGGCCGCCGGCGACCTCGATCGGAACTTCCACATTATCGTCTATCTCGATTTTGTCCAAACGATCTGGGTGGACCTGGACCTGGACCTGGACCTGGAAATCCATCGGAAACAAGAACCGGCGCCGGCGTCGGTGATGGAGAGGGTGATGAGGGAGGAATTTGATGGGTTTCGGCCGGAGGAGGCGGGAGATTGCAGCGTTTGTTGCGATGAGCTCCGTGGTGAAACGGAGGTGAGGCGACTCCCCTGCGGTCACGTCTTCCATAAATCCTGTATCCTCAAGTGGCTTCAGCTCACTAATTCCTGCCCTTTGTGCAGAGCAAAATTAGAACAATAA

mRNA sequence

ATGTCTAACCCCAACACTCTGTCTCTCCAATACTGCATCCACACCCACCCCCGCAACACCACCGGCGTAGCCACCGACGCCCAACCCATGCAATACGCCGAGCTCCGATTAGCCTATTCCAACCAATTCGTCTCTCGATCCTCCAACCAACTCCTCCAACAAACCCCCCAAACCCTAATCTCCGATGCTCTCTTACCTCTGTTTCTCCGAGACCTTCAACACCCGCCGTTCCTTTCCCACTTCTTGGTCCTTCAATTTCTCTCTACCTTCAACATCTCCACCGCCTCCTCCCACGCCATTTTCGATGACATCGCCACATTCGCCCTCGAATTGGCCGCCGGCGACCTCGATCGGAACTTCCACATTATCGTCTATCTCGATTTTGTCCAAACGATCTGGGTGGACCTGGACCTGGACCTGGACCTGGAAATCCATCGGAAACAAGAACCGGCGCCGGCGTCGGTGATGGAGAGGGTGATGAGGGAGGAATTTGATGGGTTTCGGCCGGAGGAGGCGGGAGATTGCAGCGTTTGTTGCGATGAGCTCCGTGGTGAAACGGAGGTGAGGCGACTCCCCTGCGGTCACGTCTTCCATAAATCCTGTATCCTCAAGTGGCTTCAGCTCACTAATTCCTGCCCTTTGTGCAGAGCAAAATTAGAACAATAA

Coding sequence (CDS)

ATGTCTAACCCCAACACTCTGTCTCTCCAATACTGCATCCACACCCACCCCCGCAACACCACCGGCGTAGCCACCGACGCCCAACCCATGCAATACGCCGAGCTCCGATTAGCCTATTCCAACCAATTCGTCTCTCGATCCTCCAACCAACTCCTCCAACAAACCCCCCAAACCCTAATCTCCGATGCTCTCTTACCTCTGTTTCTCCGAGACCTTCAACACCCGCCGTTCCTTTCCCACTTCTTGGTCCTTCAATTTCTCTCTACCTTCAACATCTCCACCGCCTCCTCCCACGCCATTTTCGATGACATCGCCACATTCGCCCTCGAATTGGCCGCCGGCGACCTCGATCGGAACTTCCACATTATCGTCTATCTCGATTTTGTCCAAACGATCTGGGTGGACCTGGACCTGGACCTGGACCTGGAAATCCATCGGAAACAAGAACCGGCGCCGGCGTCGGTGATGGAGAGGGTGATGAGGGAGGAATTTGATGGGTTTCGGCCGGAGGAGGCGGGAGATTGCAGCGTTTGTTGCGATGAGCTCCGTGGTGAAACGGAGGTGAGGCGACTCCCCTGCGGTCACGTCTTCCATAAATCCTGTATCCTCAAGTGGCTTCAGCTCACTAATTCCTGCCCTTTGTGCAGAGCAAAATTAGAACAATAA

Protein sequence

MSNPNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLISDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNFHIIVYLDFVQTIWVDLDLDLDLEIHRKQEPAPASVMERVMREEFDGFRPEEAGDCSVCCDELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ

Homology

[Close]

BLAST of Csor.00g256490 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 150 PAPASVMERVMREEFDGFRPEEAGDCSVCCDELRGETEVRRLPCGHVFHKSCILKWLQLT 209
           PA  S +E + R E          +C+VC +    ETE R +PC H+FH  CI+ WL + 
Sbjct: 174 PASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIR 233

Query: 210 NSCPLCRAKL 220
           NSCP+CR +L
Sbjct: 234 NSCPVCRFEL 243

[Close]

BLAST of Csor.00g256490 vs. ExPASy Swiss-Prot
Match: Q9VE61 (E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN=CG7694 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-11
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 111 LAAGDLDRNFHIIVYLDFVQTIWVDLDLDLDLEIHRKQEPAPASVMERVMREEFDGFRPE 170
           L A DL RN      L  +Q + +   +D+++E+    E +  +++E  + E     + +
Sbjct: 16  LGANDLARN------LKRLQVLAIMNGIDMEIEV---PEASKRAILELPVHEI---VKSD 75

Query: 171 EAGD--CSVCCDELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLE 221
           E GD  CSVC +      + R LPC H FH+ CIL WL+ TNSCPLCR +LE
Sbjct: 76  EGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELE 115

[Close]

BLAST of Csor.00g256490 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.1e-11
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 171 EAGDCSVCCDELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKL 220
           E   C+VC DE    ++V+++PC HVFH+ C+L WL+L NSCP+CR +L
Sbjct: 212 EMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

[Close]

BLAST of Csor.00g256490 vs. ExPASy Swiss-Prot
Match: Q9P0P0 (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-10
Identity = 37/85 (43.53%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 135 DLDLDLDLEIHRKQEPAPASVMERVMREEFDGFRPEEAGDCSVCCDELRGETEVRRLPCG 194
           DL L +D + H    PA  +V+E + R    G + E    C VC  E   E     +PC 
Sbjct: 39  DLGLVVDWD-HHLPPPAAKTVVENLPRTVIRGSQAEL--KCPVCLLEFEEEETAIEMPCH 98

Query: 195 HVFHKSCILKWLQLTNSCPLCRAKL 220
           H+FH SCIL WL  TNSCPLCR +L
Sbjct: 99  HLFHSSCILPWLSKTNSCPLCRYEL 120

[Close]

BLAST of Csor.00g256490 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-10
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 150 PAPASVMERVMREEFDGFRPEEAGDCSVCCDELRGETEVRRLPCGHVFHKSCILKWLQLT 209
           PA  S +E + R E      +   +C+VC +      E R +PC H+FH  CI+ WL + 
Sbjct: 190 PASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIR 249

Query: 210 NSCPLCRAKL 220
           NSCP+CR +L
Sbjct: 250 NSCPVCRFEL 259

[Close]

BLAST of Csor.00g256490 vs. NCBI nr
Match: KAG6603277.1 (E3 ubiquitin-protein ligase-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG6603283.1 E3 ubiquitin-protein ligase-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 447 bits (1150), Expect = 1.62e-158
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MSNPNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI 60
           MSNPNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI
Sbjct: 1   MSNPNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI 60

Query: 61  SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF 120
           SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF
Sbjct: 61  SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF 120

Query: 121 HIIVYLDFVQTIWVDLDLDLDLEIHRKQEPAPASVMERVMREEFDGFRPEEAGDCSVCCD 180
           HIIVYLDFVQTIWVDLDLDLDLEIHRKQEPAPASVMERVMREEFDGFRPEEAGDCSVCCD
Sbjct: 121 HIIVYLDFVQTIWVDLDLDLDLEIHRKQEPAPASVMERVMREEFDGFRPEEAGDCSVCCD 180

Query: 181 ELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ 221
           ELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ
Sbjct: 181 ELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ 221

[Close]

BLAST of Csor.00g256490 vs. NCBI nr
Match: XP_022928655.1 (uncharacterized protein LOC111435504 [Cucurbita moschata])

HSP 1 Score: 428 bits (1101), Expect = 4.96e-150
Identity = 213/221 (96.38%), Postives = 216/221 (97.74%), Query Frame = 0


Query: 1   MSNPNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI 60
           MS+PNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI
Sbjct: 66  MSDPNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI 125

Query: 61  SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF 120
           SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF
Sbjct: 126 SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF 185

Query: 121 HIIVYLDFVQTIWVDLDLDLDLEIHRKQEPAPASVMERVMREEFDGFRPEEAGDCSVCCD 180
           HIIVYLD VQTIWVDLDLDLDLE+  KQEPAPASVMER+MREEFDGFRPEEA DCSVCCD
Sbjct: 186 HIIVYLDLVQTIWVDLDLDLDLEMPPKQEPAPASVMERLMREEFDGFRPEEARDCSVCCD 245

Query: 181 ELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ 221
           EL GETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ
Sbjct: 246 ELGGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ 286

[Close]

BLAST of Csor.00g256490 vs. NCBI nr
Match: XP_023544066.1 (putative RING-H2 finger protein ATL36 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397 bits (1020), Expect = 8.91e-139
Identity = 201/220 (91.36%), Postives = 205/220 (93.18%), Query Frame = 0


Query: 1   MSNPNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI 60
           M+NPNTLSLQYCIHTHP NTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTP+T I
Sbjct: 1   MANPNTLSLQYCIHTHPLNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPETPI 60

Query: 61  SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF 120
           SD LLPLFLRDLQHPPFLSHFL+LQFLSTFNISTA+S AIFDDIATFALELAAGD DRNF
Sbjct: 61  SDTLLPLFLRDLQHPPFLSHFLLLQFLSTFNISTATSDAIFDDIATFALELAAGDHDRNF 120

Query: 121 HIIVYLDFVQTIWVDLDLDLDLEIHRKQEPAPASVMERVMREEFDGFRPEEAGDCSVCCD 180
           HIIVYLD VQTIWVDLDL    EI RKQEPA A VMERVMREEFDGFR EEAGDCSVCCD
Sbjct: 121 HIIVYLDLVQTIWVDLDL----EIPRKQEPAAAWVMERVMREEFDGFRAEEAGDCSVCCD 180

Query: 181 ELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLE 220
           ELRGETEVRRLPCGHVFHKSCIL WLQLTNSCPLCRAKLE
Sbjct: 181 ELRGETEVRRLPCGHVFHKSCILNWLQLTNSCPLCRAKLE 216

[Close]

BLAST of Csor.00g256490 vs. NCBI nr
Match: XP_023544065.1 (putative RING-H2 finger protein ATL36 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394 bits (1011), Expect = 2.10e-137
Identity = 199/220 (90.45%), Postives = 204/220 (92.73%), Query Frame = 0


Query: 1   MSNPNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI 60
           M+NPNTLSLQYCIHTHP NTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTP+T I
Sbjct: 1   MANPNTLSLQYCIHTHPLNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPETPI 60

Query: 61  SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF 120
           SD LLPLFLRDLQHPPFLSHFL+LQFLS FNISTA+S AIFDDIATFALELAAGD DRNF
Sbjct: 61  SDTLLPLFLRDLQHPPFLSHFLLLQFLSPFNISTATSDAIFDDIATFALELAAGDHDRNF 120

Query: 121 HIIVYLDFVQTIWVDLDLDLDLEIHRKQEPAPASVMERVMREEFDGFRPEEAGDCSVCCD 180
           HIIVYLD VQTIWVDLDL    EI RKQEPA A V+ERVMREEFDGFR EEAGDCSVCCD
Sbjct: 121 HIIVYLDLVQTIWVDLDL----EIPRKQEPAAAWVLERVMREEFDGFRAEEAGDCSVCCD 180

Query: 181 ELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLE 220
           ELRGETEVRRLPCGHVFHKSCIL WLQLTNSCPLCRAKLE
Sbjct: 181 ELRGETEVRRLPCGHVFHKSCILNWLQLTNSCPLCRAKLE 216

[Close]

BLAST of Csor.00g256490 vs. NCBI nr
Match: XP_022947933.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ubiquitin-protein ligase RNF126-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244 bits (623), Expect = 3.01e-78
Identity = 128/217 (58.99%), Postives = 159/217 (73.27%), Query Frame = 0


Query: 7   LSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLISDALLP 66
           LS Q  I +    T  VA+D QPMQ  ELRL  S   +SRSS Q+LQQTP T + DAL P
Sbjct: 9   LSFQCSIQSTCNGT--VASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFP 68

Query: 67  LFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNFHIIVYL 126
             LRDLQHPPFLS+  VLQFLS+F+I  A+   I+++I++FAL+LAAG++D NFHI+V +
Sbjct: 69  FVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEV 128

Query: 127 DFVQTIWVDLDLDLDLEIH-RKQEPAPASVMERVMREEFDGFRPEEA-GDCSVCCDELRG 186
           D ++ IWVDLD  L  E    +   APAS +ER+ R+EFDG R EE  GDCSVCC+ L+G
Sbjct: 129 DVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKG 188

Query: 187 ETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ 221
           E EV R+PCGHV+HK CILKWLQ++NSCPLCR KLEQ
Sbjct: 189 EEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLEQ 223

[Close]

BLAST of Csor.00g256490 vs. ExPASy TrEMBL
Match: A0A6J1ES83 (uncharacterized protein LOC111435504 OS=Cucurbita moschata OX=3662 GN=LOC111435504 PE=4 SV=1)

HSP 1 Score: 428 bits (1101), Expect = 2.40e-150
Identity = 213/221 (96.38%), Postives = 216/221 (97.74%), Query Frame = 0


Query: 1   MSNPNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI 60
           MS+PNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI
Sbjct: 66  MSDPNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI 125

Query: 61  SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF 120
           SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF
Sbjct: 126 SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF 185

Query: 121 HIIVYLDFVQTIWVDLDLDLDLEIHRKQEPAPASVMERVMREEFDGFRPEEAGDCSVCCD 180
           HIIVYLD VQTIWVDLDLDLDLE+  KQEPAPASVMER+MREEFDGFRPEEA DCSVCCD
Sbjct: 186 HIIVYLDLVQTIWVDLDLDLDLEMPPKQEPAPASVMERLMREEFDGFRPEEARDCSVCCD 245

Query: 181 ELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ 221
           EL GETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ
Sbjct: 246 ELGGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ 286

[Close]

BLAST of Csor.00g256490 vs. ExPASy TrEMBL
Match: A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1)

HSP 1 Score: 244 bits (623), Expect = 1.46e-78
Identity = 128/217 (58.99%), Postives = 159/217 (73.27%), Query Frame = 0


Query: 7   LSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLISDALLP 66
           LS Q  I +    T  VA+D QPMQ  ELRL  S   +SRSS Q+LQQTP T + DAL P
Sbjct: 9   LSFQCSIQSTCNGT--VASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFP 68

Query: 67  LFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNFHIIVYL 126
             LRDLQHPPFLS+  VLQFLS+F+I  A+   I+++I++FAL+LAAG++D NFHI+V +
Sbjct: 69  FVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEV 128

Query: 127 DFVQTIWVDLDLDLDLEIH-RKQEPAPASVMERVMREEFDGFRPEEA-GDCSVCCDELRG 186
           D ++ IWVDLD  L  E    +   APAS +ER+ R+EFDG R EE  GDCSVCC+ L+G
Sbjct: 129 DVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKG 188

Query: 187 ETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ 221
           E EV R+PCGHV+HK CILKWLQ++NSCPLCR KLEQ
Sbjct: 189 EEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLEQ 223

[Close]

BLAST of Csor.00g256490 vs. ExPASy TrEMBL
Match: A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1)

HSP 1 Score: 239 bits (611), Expect = 9.36e-77
Identity = 125/219 (57.08%), Postives = 160/219 (73.06%), Query Frame = 0


Query: 5   NTLSLQYCIHTHPRNTTG-VATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLISDA 64
           ++LS Q    T   N+TG +A+  QPMQ+ ELRL +S+  +SRSS Q+LQQTP T + DA
Sbjct: 7   DSLSFQCSFRT---NSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPMGDA 66

Query: 65  LLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNFHII 124
           L P  LRDL HPPFLS   VL+FLS+F+I  A  + IF +I++FAL LAAG++D NFHI+
Sbjct: 67  LFPFILRDLLHPPFLSKSHVLRFLSSFSIPIAVCNIIFVEISSFALHLAAGNVDLNFHIV 126

Query: 125 VYLDFVQTIWVDLDLDLDLEIHRK-QEPAPASVMERVMREEFDGFRPEEAGDCSVCCDEL 184
           V +D ++ IWVDLD  L  E        APAS +ER+ R+EFDG R EE G+CSVCC+ L
Sbjct: 127 VDVDAIEMIWVDLDPFLIEEYSPPAMNGAPASAIERLQRQEFDGLREEEEGECSVCCEAL 186

Query: 185 RGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ 221
           +GE EV R+PCGHV+HK CIL+WLQ++NSCPLCR KLEQ
Sbjct: 187 KGEEEVSRIPCGHVYHKCCILRWLQMSNSCPLCRTKLEQ 222

[Close]

BLAST of Csor.00g256490 vs. ExPASy TrEMBL
Match: A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1)

HSP 1 Score: 239 bits (610), Expect = 1.37e-76
Identity = 126/217 (58.06%), Postives = 158/217 (72.81%), Query Frame = 0


Query: 7   LSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLISDALLP 66
           LS Q  I +    T  VA+  QP+Q  ELRL +S   +SRSS Q+LQQTP T I DAL P
Sbjct: 9   LSFQCSIQSTCNGT--VASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFP 68

Query: 67  LFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNFHIIVYL 126
             LRDLQHPPFLS+  VLQFLS+F+I  A+   I+++I++FAL+LAAG++D NFHI+V +
Sbjct: 69  FVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEV 128

Query: 127 DFVQTIWVDLDLDLDLEIH-RKQEPAPASVMERVMREEFDGFRPEEA-GDCSVCCDELRG 186
           D  + IWVDLD  L  E    +   APAS +ER+ R++FDG R EE  GDCSVCC+ L+G
Sbjct: 129 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG 188

Query: 187 ETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ 221
           E EV R+PCGHV+HK CILKWLQ++NSCPLCR KLEQ
Sbjct: 189 EEEVSRIPCGHVYHKFCILKWLQMSNSCPLCRTKLEQ 223

[Close]

BLAST of Csor.00g256490 vs. ExPASy TrEMBL
Match: A0A6J1L387 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 6.41e-75
Identity = 121/220 (55.00%), Postives = 160/220 (72.73%), Query Frame = 0


Query: 5   NTLSLQYCIHTHPRNTTG-VATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLISDA 64
           ++LS Q+ I T   NTTG +A+   PMQ+ ELRL +S+  +SRSS Q+LQQ+P T + ++
Sbjct: 7   DSLSFQFSIRT---NTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPLGES 66

Query: 65  LLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNFHII 124
           L P  LRDL+HPPFL ++ VL FLS+F+I  A+   I+ +I++FAL L A ++D NFHI+
Sbjct: 67  LFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNFHIV 126

Query: 125 VYLDFVQTIWVDLDLDLDLEIHRK-QEPAPASVMERVMREEFDGFRPEEA-GDCSVCCDE 184
           V +D ++ IWVDLD  L  E        APAS +ER+ R++FDG R EE  GDCSVCC+ 
Sbjct: 127 VDVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEA 186

Query: 185 LRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ 221
           LRGE EV R+PCGHV+HK CILKWLQ++NSCPLCR KLEQ
Sbjct: 187 LRGEEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLEQ 223

[Close]

BLAST of Csor.00g256490 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 150 PAPASVMERVMREEFDGFRPEEAGDCSVCCDELRGETEVRRLPCGHVFHKSCILKWLQLT 209
           PA  S +E + R E          +C+VC +    ETE R +PC H+FH  CI+ WL + 
Sbjct: 174 PASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIR 233

Query: 210 NSCPLCRAKL 220
           NSCP+CR +L
Sbjct: 234 NSCPVCRFEL 243

[Close]

BLAST of Csor.00g256490 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-12
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 171 EAGDCSVCCDELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKL 220
           E   C+VC DE    ++V+++PC HVFH+ C+L WL+L NSCP+CR +L
Sbjct: 212 EMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

[Close]

BLAST of Csor.00g256490 vs. TAIR 10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 68.2 bits (165), Expect = 9.7e-12
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 150 PAPASVMERVMREEFDGFRPEEAGDCSVCCDELRGETEVRRLPCGHVFHKSCILKWLQLT 209
           PA  S +E + R E      +   +C+VC +      E R +PC H+FH  CI+ WL + 
Sbjct: 190 PASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIR 249

Query: 210 NSCPLCRAKL 220
           NSCP+CR +L
Sbjct: 250 NSCPVCRFEL 259

[Close]

BLAST of Csor.00g256490 vs. TAIR 10
Match: AT3G02340.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 8.2e-11
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 175 CSVCCDELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKL 220
           C+VC DE+  E +VRRLPC H +H  CI+ WL + N+CP+CR +L
Sbjct: 335 CAVCKDEMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYEL 379

[Close]

BLAST of Csor.00g256490 vs. TAIR 10
Match: AT1G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-10
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 170 EEAGDCSVCCDELRGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKL 220
           EE   CSVC D+    TE + +PC H FH  C+L WL+L +SCP+CR +L
Sbjct: 218 EETLQCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQL 267

The following BLAST results are available for this feature:

BLAST of Csor.00g256490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940T5	1.6e-11	41.43	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]
Q9VE61	2.1e-11	37.50	E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN...	[more]
Q8LPN7	6.1e-11	51.02	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9P0P0	1.0e-10	43.53	E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1	[more]
Q9SNB6	1.4e-10	38.57	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]

BLAST of Csor.00g256490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603277.1	1.62e-158	100.00	E3 ubiquitin-protein ligase-like protein, partial [Cucurbita argyrosperma subsp....	[more]
XP_022928655.1	4.96e-150	96.38	uncharacterized protein LOC111435504 [Cucurbita moschata]	[more]
XP_023544066.1	8.91e-139	91.36	putative RING-H2 finger protein ATL36 [Cucurbita pepo subsp. pepo]	[more]
XP_023544065.1	2.10e-137	90.45	putative RING-H2 finger protein ATL36 [Cucurbita pepo subsp. pepo]	[more]
XP_022947933.1	3.01e-78	58.99	E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ...	[more]

BLAST of Csor.00g256490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ES83	2.40e-150	96.38	uncharacterized protein LOC111435504 OS=Cucurbita moschata OX=3662 GN=LOC1114355...	[more]
A0A6J1G7Z5	1.46e-78	58.99	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1G809	9.36e-77	57.08	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KYV1	1.37e-76	58.06	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499...	[more]
A0A6J1L387	6.41e-75	55.00	RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE...	[more]

BLAST of Csor.00g256490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59550.1	1.1e-12	41.43	zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G19950.1	4.3e-12	51.02	RING/U-box superfamily protein	[more]
AT3G46620.1	9.7e-12	38.57	zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G02340.1	8.2e-11	53.33	RING/U-box superfamily protein	[more]
AT1G55530.1	1.4e-10	50.00	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 175..215 e-value: 6.8E-9 score: 45.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 174..216 e-value: 6.5E-14 score: 52.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 175..216 score: 13.551494
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 140..221 e-value: 1.0E-19 score: 71.9
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 29..217
None	No IPR available	PANTHER	PTHR22765:SF329	SUBFAMILY NOT NAMED	coord: 29..217
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 174..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g256490.m01	Csor.00g256490.m01	mRNA