Csor.00g256000 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g256000
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionLoricrin-like
LocationCsor_Chr03: 837500 .. 837814 (+)
RNA-Seq ExpressionCsor.00g256000
SyntenyCsor.00g256000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGTCAATTCCGGCCGCCGATGGCGGTGGTTTAGGAGATGTCACCTTATTCAGTTCCGGTGGGTTACTTTTGCTTGCAACCGTTCTTCTGTCTCTCTCTCTCGTATCGATGATCATATTTGCCTGCGGTGATAGCTCGAGTGACAACAAAAGAAAAAGAAATGGCGGAGGCTGCGGTGGAGGAGGCGGCGGAGGTTGTGGTGGCGATGTGGGTGGTGGTGGAGGTTGTGGCGGAGGAGGCGGAGGTTGTGGTGGCGTTGCGGGTGGTGGTGGAGGTTGTGGCGGAGGAGGCGGAGGATCTGCATGTTAA

mRNA sequence

ATGGGAAGGTCAATTCCGGCCGCCGATGGCGGTGGTTTAGGAGATGTCACCTTATTCAGTTCCGGTGGGTTACTTTTGCTTGCAACCGTTCTTCTGTCTCTCTCTCTCGTATCGATGATCATATTTGCCTGCGGTGATAGCTCGAGTGACAACAAAAGAAAAAGAAATGGCGGAGGCTGCGGTGGAGGAGGCGGCGGAGGTTGTGGTGGCGATGTGGGTGGTGGTGGAGGTTGTGGCGGAGGAGGCGGAGGTTGTGGTGGCGTTGCGGGTGGTGGTGGAGGTTGTGGCGGAGGAGGCGGAGGATCTGCATGTTAA

Coding sequence (CDS)

ATGGGAAGGTCAATTCCGGCCGCCGATGGCGGTGGTTTAGGAGATGTCACCTTATTCAGTTCCGGTGGGTTACTTTTGCTTGCAACCGTTCTTCTGTCTCTCTCTCTCGTATCGATGATCATATTTGCCTGCGGTGATAGCTCGAGTGACAACAAAAGAAAAAGAAATGGCGGAGGCTGCGGTGGAGGAGGCGGCGGAGGTTGTGGTGGCGATGTGGGTGGTGGTGGAGGTTGTGGCGGAGGAGGCGGAGGTTGTGGTGGCGTTGCGGGTGGTGGTGGAGGTTGTGGCGGAGGAGGCGGAGGATCTGCATGTTAA

Protein sequence

MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGCGGGGGGGCGGDVGGGGGCGGGGGGCGGVAGGGGGCGGGGGGSAC
Homology
BLAST of Csor.00g256000 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155 bits (391), Expect = 1.34e-46
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60
           MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC
Sbjct: 1   MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60

Query: 61  GGGGGGGCGGDVGGGGGCGGGGGGCGGVAGGGGGCGGGGGGSAC 104
           GGGGGGGCGGDVGGGGGCGGGGGGCGGVAGGGGGCGGGGGGSAC
Sbjct: 61  GGGGGGGCGGDVGGGGGCGGGGGGCGGVAGGGGGCGGGGGGSAC 104

BLAST of Csor.00g256000 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104 bits (260), Expect = 5.22e-27
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 1  MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60
          MGR IPAADGGGLGDVTLFSSGGLLLLAT+L+SLSLVSMIIFACGDSS  NKRKRNGGG 
Sbjct: 1  MGRPIPAADGGGLGDVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSRKNKRKRNGGGG 60

Query: 61 GGG-GGGGCGG 70
          G G GGGGCGG
Sbjct: 61 GAGCGGGGCGG 71

BLAST of Csor.00g256000 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.6 bits (187), Expect = 7.70e-16
Identity = 56/79 (70.89%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 1  MGRSIPAADGGGLG--DVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGG 60
          MGR I AA GGG G  DVTL SSGGL LL+ +LLS+SLVSMIIFACG+S+ D KRK  GG
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSN-DPKRKDGGG 60

Query: 61 GCGGG---GGGGCGGDVGG 74
          GCGGG   GGGGCGG  GG
Sbjct: 61 GCGGGDGGGGGGCGGGCGG 78

BLAST of Csor.00g256000 vs. NCBI nr
Match: KAG5234987.1 (hypothetical protein IMY05_011G0037600 [Salix suchowensis])

HSP 1 Score: 66.6 bits (161), Expect = 1.64e-11
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 0

Query: 20  SSGGLLLLATVLLSLSLVSMIIFACGDSSSDN-KRKRNGGGCGGGGGGGCGGDVGGGGGC 79
           SS   LLL  +++SLS++SM+IFACGDS+S   KR+R GG  GGGGGGGCGGD GGGGGC
Sbjct: 22  SSEAFLLLCMIVVSLSIISMVIFACGDSNSGGGKRRRKGGDGGGGGGGGCGGDGGGGGGC 81

Query: 80  GGGGGG--CGGVAGGGGGCGGGGGGSAC 104
           GGGGGG  CGG  GGGGGCGGGGGG  C
Sbjct: 82  GGGGGGGGCGGDGGGGGGCGGGGGGGGC 109

BLAST of Csor.00g256000 vs. NCBI nr
Match: KAB2611902.1 (loricrin-like [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 63.5 bits (153), Expect = 1.96e-10
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MGRSIPAADGGGLGDVTLF----SSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRN 60
          MGR+     GG  G+V +     +SGGLLLL  +L+SLSL+SM+IFACGD    N ++R 
Sbjct: 1  MGRTYVGVGGGHAGEVGIVMPDHNSGGLLLLCMILMSLSLISMVIFACGDHKGSNNKRRG 60

Query: 61 GGGCGGGGGGGCGGDV 72
          GG   GGGGGGCGG  
Sbjct: 61 GGAACGGGGGGCGGGT 76

BLAST of Csor.00g256000 vs. ExPASy TrEMBL
Match: A0A5N5GEI7 (Loricrin-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_019934 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.50e-11
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MGRSIPAADGGGLGDVTLF----SSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRN 60
          MGR+     GG  G+V +     +SGGLLLL  +L+SLSL+SM+IFACGD    N ++R 
Sbjct: 1  MGRTYVGVGGGHAGEVGIVMPDHNSGGLLLLCMILMSLSLISMVIFACGDHKGSNNKRRG 60

Query: 61 GGGCGGGGGGGCGGDV 72
          GG   GGGGGGCGG  
Sbjct: 61 GGAACGGGGGGCGGGT 76

BLAST of Csor.00g256000 vs. ExPASy TrEMBL
Match: A0A5D2J8B2 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D10G250900v1 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.56e-10
Identity = 62/105 (59.05%), Postives = 72/105 (68.57%), Query Frame = 0

Query: 1   MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60
            G S P  + GG     + +S GLLLL  V+ SLSL+SM+IFACGD +S  +R+R+GGG 
Sbjct: 9   FGGSGPGEEAGG--GFIIHTSTGLLLLCMVIFSLSLISMVIFACGDGNSGKRRRRSGGGA 68

Query: 61  GGGGGGGCGGDVGGGGGCGGGGGGCGGVAGGGGG-CGGGGGGSAC 104
           GG     CGG   GGGGCGGGGGGCGG  GGGGG CGGGGGG  C
Sbjct: 69  GG-----CGG---GGGGCGGGGGGCGGGGGGGGGGCGGGGGGGGC 103

BLAST of Csor.00g256000 vs. ExPASy TrEMBL
Match: A0A5J5PUG6 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D10G231700v1 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.88e-10
Identity = 65/106 (61.32%), Postives = 75/106 (70.75%), Query Frame = 0

Query: 1   MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60
            G S P  + GG     + +S GLLLL  V+ SLSL+SM+IFACGD +S  +R+R+GGG 
Sbjct: 9   FGGSGPGEEAGG--GFIIHTSTGLLLLCMVIFSLSLISMVIFACGDGNSGKRRRRSGGGA 68

Query: 61  GG--GGGGGCGGDVGGGGGCGGGGGGCGGVAGGGGGCGGGGGGSAC 104
           GG  GGGGGCGG   GGG CGGGGGG GG  GGGGGCGGGGGG  C
Sbjct: 69  GGCGGGGGGCGG---GGGSCGGGGGG-GGCGGGGGGCGGGGGGGGC 108

BLAST of Csor.00g256000 vs. ExPASy TrEMBL
Match: A0A5D2B4S7 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G249800v1 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.88e-10
Identity = 65/106 (61.32%), Postives = 75/106 (70.75%), Query Frame = 0

Query: 1   MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60
            G S P  + GG     + +S GLLLL  V+ SLSL+SM+IFACGD +S  +R+R+GGG 
Sbjct: 9   FGGSGPGEEAGG--GFIIHTSTGLLLLCMVIFSLSLISMVIFACGDGNSGKRRRRSGGGA 68

Query: 61  GG--GGGGGCGGDVGGGGGCGGGGGGCGGVAGGGGGCGGGGGGSAC 104
           GG  GGGGGCGG   GGG CGGGGGG GG  GGGGGCGGGGGG  C
Sbjct: 69  GGCGGGGGGCGG---GGGSCGGGGGG-GGCGGGGGGCGGGGGGGGC 108

BLAST of Csor.00g256000 vs. ExPASy TrEMBL
Match: A0A5N5GBC1 (Loricrin-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034934 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.05e-09
Identity = 58/107 (54.21%), Postives = 66/107 (61.68%), Query Frame = 0

Query: 1   MGRSIPAADGGGLGDVTLF----SSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKR- 60
           M R+     GG  G V +     +SGGLLLL  +L+SLSLVSM+IFACGD S D KR+R 
Sbjct: 1   MARTYVGPGGGHAGGVDIMMPDHNSGGLLLLCMILMSLSLVSMVIFACGDGS-DEKRRRP 60

Query: 61  -----------------NGGGCGGGGGGGCGGDVGGGGGCGGGGGGC 85
                            +GGGCG GGGGGCGG  GGGGGCGGGGGGC
Sbjct: 61  GRPGGVVGGGGGGCGGGSGGGCGDGGGGGCGG--GGGGGCGGGGGGC 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6603228.11.34e-46100.00hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603229.15.22e-2788.73hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6604774.17.70e-1670.89hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG5234987.11.64e-1170.45hypothetical protein IMY05_011G0037600 [Salix suchowensis][more]
KAB2611902.11.96e-1052.63loricrin-like [Pyrus ussuriensis x Pyrus communis][more]
Match NameE-valueIdentityDescription
A0A5N5GEI79.50e-1152.63Loricrin-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_019934 P... [more]
A0A5D2J8B22.56e-1059.05Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D10G250900v1 P... [more]
A0A5J5PUG62.88e-1061.32Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D10G231700v1 PE... [more]
A0A5D2B4S72.88e-1061.32Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G249800v1 PE=... [more]
A0A5N5GBC11.05e-0954.21Loricrin-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034934 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35420OS02G0198500 PROTEINcoord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g256000.m01Csor.00g256000.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane