Csor.00g255740 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g255740
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr20: 5765590 .. 5765835 (+)
RNA-Seq Expression	Csor.00g255740
Synteny	Csor.00g255740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCATCATCATCTCTGCCTGCTCTCCCTCCTCCTCTTACCCTTGCTTCTTCCCGCCACCTCTACTTCACTACTCCACAGGAGAGCCCTCCAGGCCAACTCCGATGCCCATGAATTCAAATTGAAACCAAAGGACGGTGGTGGTGGTGGTAACGAGGGCGGCGGTGGCGGTTTCGACATGTCGAATCAGCGAGTGTTCACGTTGGCGTCAGGACCCAGCAGGAGAGGAGATGGGCACAAGTGA

mRNA sequence

ATGAGGCATCATCATCTCTGCCTGCTCTCCCTCCTCCTCTTACCCTTGCTTCTTCCCGCCACCTCTACTTCACTACTCCACAGGAGAGCCCTCCAGGCCAACTCCGATGCCCATGAATTCAAATTGAAACCAAAGGACGGTGGTGGTGGTGGTAACGAGGGCGGCGGTGGCGGTTTCGACATGTCGAATCAGCGAGTGTTCACGTTGGCGTCAGGACCCAGCAGGAGAGGAGATGGGCACAAGTGA

Coding sequence (CDS)

ATGAGGCATCATCATCTCTGCCTGCTCTCCCTCCTCCTCTTACCCTTGCTTCTTCCCGCCACCTCTACTTCACTACTCCACAGGAGAGCCCTCCAGGCCAACTCCGATGCCCATGAATTCAAATTGAAACCAAAGGACGGTGGTGGTGGTGGTAACGAGGGCGGCGGTGGCGGTTTCGACATGTCGAATCAGCGAGTGTTCACGTTGGCGTCAGGACCCAGCAGGAGAGGAGATGGGCACAAGTGA

Protein sequence

MRHHHLCLLSLLLLPLLLPATSTSLLHRRALQANSDAHEFKLKPKDGGGGGNEGGGGGFDMSNQRVFTLASGPSRRGDGHK

Homology

[Close]

BLAST of Csor.00g255740 vs. NCBI nr
Match: KAG6571236.1 (hypothetical protein SDJN03_30151, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157 bits (398), Expect = 2.22e-48
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MRHHHLCLLSLLLLPLLLPATSTSLLHRRALQANSDAHEFKLKPKDGGGGGNEGGGGGFD 60
          MRHHHLCLLSLLLLPLLLPATSTSLLHRRALQANSDAHEFKLKPKDGGGGGNEGGGGGFD
Sbjct: 1  MRHHHLCLLSLLLLPLLLPATSTSLLHRRALQANSDAHEFKLKPKDGGGGGNEGGGGGFD 60

Query: 61 MSNQRVFTLASGPSRRGDGHK 81
          MSNQRVFTLASGPSRRGDGHK
Sbjct: 61 MSNQRVFTLASGPSRRGDGHK 81

[Close]

BLAST of Csor.00g255740 vs. NCBI nr
Match: KGN63303.1 (hypothetical protein Csa_022628 [Cucumis sativus])

HSP 1 Score: 101 bits (251), Expect = 2.62e-25
Identity = 62/84 (73.81%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 5   HLCLLSLLLLPLLLPATSTSLL-HRRALQAN------SDAHEFKLKPKDGGGGGNEGGGG 64
           HLCLLSLLLLPLLLP T+++LL H RALQ +      S AHEFKLKPKD  GGG+ GGGG
Sbjct: 52  HLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDDGGGDSGGGG 111

Query: 65  GFDMSNQRVFTLASGPSRRGDGHK 81
             D SNQRVFTLASGPSRRGDGHK
Sbjct: 112 -SDTSNQRVFTLASGPSRRGDGHK 134

[Close]

BLAST of Csor.00g255740 vs. ExPASy TrEMBL
Match: A0A0A0LNA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 101 bits (251), Expect = 1.27e-25
Identity = 62/84 (73.81%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 5   HLCLLSLLLLPLLLPATSTSLL-HRRALQAN------SDAHEFKLKPKDGGGGGNEGGGG 64
           HLCLLSLLLLPLLLP T+++LL H RALQ +      S AHEFKLKPKD  GGG+ GGGG
Sbjct: 52  HLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDDGGGDSGGGG 111

Query: 65  GFDMSNQRVFTLASGPSRRGDGHK 81
             D SNQRVFTLASGPSRRGDGHK
Sbjct: 112 -SDTSNQRVFTLASGPSRRGDGHK 134

The following BLAST results are available for this feature:

BLAST of Csor.00g255740 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g255740 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571236.1	2.22e-48	100.00	hypothetical protein SDJN03_30151, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN63303.1	2.62e-25	73.81	hypothetical protein Csa_022628 [Cucumis sativus]	[more]

BLAST of Csor.00g255740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNA9	1.27e-25	73.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1	[more]

BLAST of Csor.00g255740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g255740.m01	Csor.00g255740.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane