Csor.00g253990 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g253990
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 9468799 .. 9469149 (+)
RNA-Seq Expression	Csor.00g253990
Synteny	Csor.00g253990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACGACGACGCTCCCGGTGTCTTTTCCAGGTAATCGCGTTCCGTGTCCGAGTCCGCGATCTACCGCAAATCCAAACACGCCGCTTCAAATACCGCCTTCGTCACCAATCAACTGCTGCGGAGCACCGGTAAGGACGCCTGGATCACCGGCACTACATTCCTCATCCTCGTTGTGCCGCTCATCATCGAGATGGATCGCGGACAGCAGCTCAATGAACTCGAGTTGCAGCAGGCTACCTTGCTCGGTGCCCCCGCCGTGTCGGTTCAAAAGTGATTTGCGAAGTTCCGTCGCCGATGCCGAGATGGTTTCTTCGGTTCTCTATTCTCGAGGTTCGTTTCTCTTATGA

mRNA sequence

ATGACGACGACGACGCTCCCGGTGTCTTTTCCAGGTAATCGCGTTCCGTGTCCGAGTCCGCGATCTACCGCAAATCCAAACACGCCGCTTCAAATACCGCCTTCGTCACCAATCAACTGCTGCGGAGCACCGGTAAGGACGCCTGGATCACCGGCACTACATTCCTCATCCTCGTTGTGCCGCTCATCATCGAGATGGATCGCGGACAGCAGCTCAATGAACTCGAGTTGCAGCAGGCTACCTTGCTCGGTGCCCCCGCCGTGTCGGTTCAAAAGTGATTTGCGAAGTTCCGTCGCCGATGCCGAGATGGTTTCTTCGGTTCTCTATTCTCGAGGTTCGTTTCTCTTATGA

Coding sequence (CDS)

ATGACGACGACGACGCTCCCGGTGTCTTTTCCAGGTAATCGCGTTCCGTGTCCGAGTCCGCGATCTACCGCAAATCCAAACACGCCGCTTCAAATACCGCCTTCGTCACCAATCAACTGCTGCGGAGCACCGGTAAGGACGCCTGGATCACCGGCACTACATTCCTCATCCTCGTTGTGCCGCTCATCATCGAGATGGATCGCGGACAGCAGCTCAATGAACTCGAGTTGCAGCAGGCTACCTTGCTCGGTGCCCCCGCCGTGTCGGTTCAAAAGTGATTTGCGAAGTTCCGTCGCCGATGCCGAGATGGTTTCTTCGGTTCTCTATTCTCGAGGTTCGTTTCTCTTATGA

Protein sequence

MTTTTLPVSFPGNRVPCPSPRSTANPNTPLQIPPSSPINCCGAPVRTPGSPALHSSSSLCRSSSRWIADSSSMNSSCSRLPCSVPPPCRFKSDLRSSVADAEMVSSVLYSRGSFLL

Homology

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BLAST of Csor.00g253990 vs. NCBI nr
Match: KAG6597337.1 (hypothetical protein SDJN03_10517, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228 bits (582), Expect = 2.39e-75
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MTTTTLPVSFPGNRVPCPSPRSTANPNTPLQIPPSSPINCCGAPVRTPGSPALHSSSSLC 60
           MTTTTLPVSFPGNRVPCPSPRSTANPNTPLQIPPSSPINCCGAPVRTPGSPALHSSSSLC
Sbjct: 1   MTTTTLPVSFPGNRVPCPSPRSTANPNTPLQIPPSSPINCCGAPVRTPGSPALHSSSSLC 60

Query: 61  RSSSRWIADSSSMNSSCSRLPCSVPPPCRFKSDLRSSVADAEMVSSVLYSRGSFLL 116
           RSSSRWIADSSSMNSSCSRLPCSVPPPCRFKSDLRSSVADAEMVSSVLYSRGSFLL
Sbjct: 61  RSSSRWIADSSSMNSSCSRLPCSVPPPCRFKSDLRSSVADAEMVSSVLYSRGSFLL 116

The following BLAST results are available for this feature:

BLAST of Csor.00g253990 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g253990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597337.1	2.39e-75	100.00	hypothetical protein SDJN03_10517, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g253990 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g253990 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g253990.m01	Csor.00g253990.m01	mRNA