Csor.00g253920 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g253920
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionAcidic leucine-rich nuclear phosphoprotein 32-related protein 2
LocationCsor_Chr06: 9496668 .. 9497217 (+)
RNA-Seq ExpressionCsor.00g253920
SyntenyCsor.00g253920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCGATTCTAAGGATGTTGAAGAGGCTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAACGGCGAAGATTACAGTGAATCGAATGCTCTATTGCCGCCCCGGCGCGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAATCTAGCGGAGATTTTGGAGTTTCAACCGAGGTAGCTTGATTGGTTTCCTTTTATGTTGGTTTTTTTTGGTATGTTTTATGTTCTTTGGGGAAGATGGGCTGTCTGTCATGCTGTCGTCTTATGCTGTCTGATGAGTTGAAATGCTCTGTTCTTTTGCTTGTTGTTCGTGAAATCGCTCGTTTAGAATGACTTTTTAAGTACTTAAACGCTTAGAAAGTGAGTTGAAATAAGTTCTTAGTTTGGCGTTATGAGCTTAACGAGATGGGGTCGATTTTGAATTCGGTATCTTTGCGTGCTTTTGCAGCGATGTGAGCGACTCGGGGGACGAGGAGGACGATTCTTGCAGCTGTATAATTATGTAG

mRNA sequence

ATGGGTGGCGATTCTAAGGATGTTGAAGAGGCTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAACGGCGAAGATTACAGTGAATCGAATGCTCTATTGCCGCCCCGGCGCGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAATCTAGCGGAGATTTTGGAGTTTCAACCGAGCGATGTGAGCGACTCGGGGGACGAGGAGGACGATTCTTGCAGCTGTATAATTATGTAG

Coding sequence (CDS)

ATGGGTGGCGATTCTAAGGATGTTGAAGAGGCTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAACGGCGAAGATTACAGTGAATCGAATGCTCTATTGCCGCCCCGGCGCGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAATCTAGCGGAGATTTTGGAGTTTCAACCGAGCGATGTGAGCGACTCGGGGGACGAGGAGGACGATTCTTGCAGCTGTATAATTATGTAG

Protein sequence

MGGDSKDVEEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM
Homology
BLAST of Csor.00g253920 vs. NCBI nr
Match: KAG6597344.1 (hypothetical protein SDJN03_10524, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028809.1 hypothetical protein SDJN02_09990, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183 bits (465), Expect = 2.72e-58
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MGGDSKDVEEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSN 60
          MGGDSKDVEEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSN
Sbjct: 1  MGGDSKDVEEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSN 60

Query: 61 GNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 91
          GNNLAEILEFQPSDVSDSGDEEDDSCSCIIM
Sbjct: 61 GNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 91

BLAST of Csor.00g253920 vs. NCBI nr
Match: XP_038897861.1 (uncharacterized protein LOC120085750 [Benincasa hispida])

HSP 1 Score: 157 bits (396), Expect = 1.04e-47
Identity = 80/95 (84.21%), Postives = 83/95 (87.37%), Query Frame = 0

Query: 1  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRW 60
          M GDSKDV    E+ +DS A GEVGD  NGE+YSESNALLPPRRGGMSRKSNKPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKIMDSAATGEVGDHSNGEEYSESNALLPPRRGGMSRKSNKPRMKVRW 60

Query: 61 TDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 91
           DSNGNNLAEILEFQPSDVSDSGDEE DSCSCIIM
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEETDSCSCIIM 95

BLAST of Csor.00g253920 vs. NCBI nr
Match: XP_022924268.1 (uncharacterized protein LOC111431793 [Cucurbita moschata] >XP_023526467.1 uncharacterized protein LOC111789958 [Cucurbita pepo subsp. pepo] >KAG7018809.1 hypothetical protein SDJN02_20682 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154 bits (390), Expect = 8.52e-47
Identity = 80/95 (84.21%), Postives = 83/95 (87.37%), Query Frame = 0

Query: 1  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRW 60
          MGGDS+ V    E +VDS AAGEVGD  NGED SESNALLPPRRGGMSRKSNKPRMKVRW
Sbjct: 1  MGGDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60

Query: 61 TDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 91
           DSNGNNLAEILEFQPSDVSDSGDEE DSCSC+IM
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 95

BLAST of Csor.00g253920 vs. NCBI nr
Match: XP_004134046.1 (uncharacterized protein LOC101205158 [Cucumis sativus])

HSP 1 Score: 154 bits (390), Expect = 8.78e-47
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0

Query: 3  GDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTD 62
          GDSKDV    E+ +DS AAGEVGD  NGE+YSESNALLPPRRGGMSRK NKPRMKVRW D
Sbjct: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63

Query: 63 SNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 91
          SNGNNLAEILEFQPSDVSDSGDEE DSCSCIIM
Sbjct: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96

BLAST of Csor.00g253920 vs. NCBI nr
Match: KAG6582410.1 (hypothetical protein SDJN03_22412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154 bits (390), Expect = 4.98e-46
Identity = 80/95 (84.21%), Postives = 83/95 (87.37%), Query Frame = 0

Query: 1   MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRW 60
           MGGDS+ V    E +VDS AAGEVGD  NGED SESNALLPPRRGGMSRKSNKPRMKVRW
Sbjct: 58  MGGDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 117

Query: 61  TDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 91
            DSNGNNLAEILEFQPSDVSDSGDEE DSCSC+IM
Sbjct: 118 NDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 152

BLAST of Csor.00g253920 vs. ExPASy TrEMBL
Match: A0A6J1EBY1 (uncharacterized protein LOC111431793 OS=Cucurbita moschata OX=3662 GN=LOC111431793 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 4.13e-47
Identity = 80/95 (84.21%), Postives = 83/95 (87.37%), Query Frame = 0

Query: 1  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRW 60
          MGGDS+ V    E +VDS AAGEVGD  NGED SESNALLPPRRGGMSRKSNKPRMKVRW
Sbjct: 1  MGGDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60

Query: 61 TDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 91
           DSNGNNLAEILEFQPSDVSDSGDEE DSCSC+IM
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 95

BLAST of Csor.00g253920 vs. ExPASy TrEMBL
Match: A0A0A0L701 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134730 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 4.25e-47
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0

Query: 3  GDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTD 62
          GDSKDV    E+ +DS AAGEVGD  NGE+YSESNALLPPRRGGMSRK NKPRMKVRW D
Sbjct: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63

Query: 63 SNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 91
          SNGNNLAEILEFQPSDVSDSGDEE DSCSCIIM
Sbjct: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96

BLAST of Csor.00g253920 vs. ExPASy TrEMBL
Match: A0A6J1INK9 (uncharacterized protein LOC111479120 OS=Cucurbita maxima OX=3661 GN=LOC111479120 PE=4 SV=1)

HSP 1 Score: 152 bits (384), Expect = 6.08e-46
Identity = 79/95 (83.16%), Postives = 82/95 (86.32%), Query Frame = 0

Query: 1   MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRW 60
           MGGDS+ V    E +VDS AAGEVGD  N ED SESNALLPPRRGGMSRKSNKPRMKVRW
Sbjct: 20  MGGDSRAVNGYDERSVDSAAAGEVGDHRNSEDDSESNALLPPRRGGMSRKSNKPRMKVRW 79

Query: 61  TDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 91
            DSNGNNLAEILEFQPSDVSDSGDEE DSCSC+IM
Sbjct: 80  NDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 114

BLAST of Csor.00g253920 vs. ExPASy TrEMBL
Match: A0A5A7U1V8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001950 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 9.78e-44
Identity = 76/91 (83.52%), Postives = 79/91 (86.81%), Query Frame = 0

Query: 1  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRW 60
          M GDSKDV    E+ +DS AAGEVGD  NGE+YSESNALLPPRRGGMSRK NKPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61 TDSNGNNLAEILEFQPSDVSDSGDEEDDSCS 87
           DSNGNNLAEILEFQPSDVSDSGDEE DSCS
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCS 91

BLAST of Csor.00g253920 vs. ExPASy TrEMBL
Match: A0A1S3AX40 (uncharacterized protein LOC103483558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483558 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 9.78e-44
Identity = 76/91 (83.52%), Postives = 79/91 (86.81%), Query Frame = 0

Query: 1  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRW 60
          M GDSKDV    E+ +DS AAGEVGD  NGE+YSESNALLPPRRGGMSRK NKPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61 TDSNGNNLAEILEFQPSDVSDSGDEEDDSCS 87
           DSNGNNLAEILEFQPSDVSDSGDEE DSCS
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCS 91

BLAST of Csor.00g253920 vs. TAIR 10
Match: AT2G33390.1 (unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-16
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 0

Query: 10 EAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEILE 69
          +A+ S+ + E+ D    E+ SES  LLPPR+GGMSR ++K +  V+W D  G+NLAE+L 
Sbjct: 17 KAIVSLNSSEIEDQIFEEEESESQCLLPPRKGGMSRSTDKIKRTVQWNDIKGDNLAEVLV 76

Query: 70 FQPSDVSDSGDEEDDSCSCIIM 92
          ++PS+VSD+ D++ DSC C IM
Sbjct: 77 YEPSEVSDTEDDDSDSCICTIM 98

BLAST of Csor.00g253920 vs. TAIR 10
Match: AT1G55475.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 3.1e-04
Identity = 19/43 (44.19%), Postives = 26/43 (60.47%), Query Frame = 0

Query: 49  KPRMKVRWTDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
           + + KV+W D  G  LAEI EF+PSD  D   +   +C CII+
Sbjct: 78  REKKKVQWVDVIGKELAEIREFEPSDEDDIDSDRGKTCVCIIL 120

BLAST of Csor.00g253920 vs. TAIR 10
Match: AT1G34010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22790.2); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 5.2e-04
Identity = 21/45 (46.67%), Postives = 28/45 (62.22%), Query Frame = 0

Query: 51  RMKVRWTDSNGNNLAEILEFQPSDVSDSGDE----EDDSCSCIIM 92
           R KV+W D+ G  +AE+ EF+PS+V +S DE       SC C IM
Sbjct: 138 RRKVQWPDTCGIEIAEVREFEPSEVDESEDEFHHGSGKSCMCTIM 182

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6597344.12.72e-58100.00hypothetical protein SDJN03_10524, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038897861.11.04e-4784.21uncharacterized protein LOC120085750 [Benincasa hispida][more]
XP_022924268.18.52e-4784.21uncharacterized protein LOC111431793 [Cucurbita moschata] >XP_023526467.1 unchar... [more]
XP_004134046.18.78e-4784.95uncharacterized protein LOC101205158 [Cucumis sativus][more]
KAG6582410.14.98e-4684.21hypothetical protein SDJN03_22412, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1EBY14.13e-4784.21uncharacterized protein LOC111431793 OS=Cucurbita moschata OX=3662 GN=LOC1114317... [more]
A0A0A0L7014.25e-4784.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134730 PE=4 SV=1[more]
A0A6J1INK96.08e-4683.16uncharacterized protein LOC111479120 OS=Cucurbita maxima OX=3661 GN=LOC111479120... [more]
A0A5A7U1V89.78e-4483.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AX409.78e-4483.52uncharacterized protein LOC103483558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
AT2G33390.17.7e-1648.78unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bac... [more]
AT1G55475.13.1e-0444.19unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G34010.15.2e-0446.67unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..91
NoneNo IPR availablePANTHERPTHR33401LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTICcoord: 20..91
NoneNo IPR availablePANTHERPTHR33401:SF2OS03G0138400 PROTEINcoord: 20..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g253920.m01Csor.00g253920.m01mRNA