Csor.00g253920 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTGGCGATTCTAAGGATGTTGAAGAGGCTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAACGGCGAAGATTACAGTGAATCGAATGCTCTATTGCCGCCCCGGCGCGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAATCTAGCGGAGATTTTGGAGTTTCAACCGAGGTAGCTTGATTGGTTTCCTTTTATGTTGGTTTTTTTTGGTATGTTTTATGTTCTTTGGGGAAGATGGGCTGTCTGTCATGCTGTCGTCTTATGCTGTCTGATGAGTTGAAATGCTCTGTTCTTTTGCTTGTTGTTCGTGAAATCGCTCGTTTAGAATGACTTTTTAAGTACTTAAACGCTTAGAAAGTGAGTTGAAATAAGTTCTTAGTTTGGCGTTATGAGCTTAACGAGATGGGGTCGATTTTGAATTCGGTATCTTTGCGTGCTTTTGCAGCGATGTGAGCGACTCGGGGGACGAGGAGGACGATTCTTGCAGCTGTATAATTATGTAG ATGGGTGGCGATTCTAAGGATGTTGAAGAGGCTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAACGGCGAAGATTACAGTGAATCGAATGCTCTATTGCCGCCCCGGCGCGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAATCTAGCGGAGATTTTGGAGTTTCAACCGAGCGATGTGAGCGACTCGGGGGACGAGGAGGACGATTCTTGCAGCTGTATAATTATGTAG ATGGGTGGCGATTCTAAGGATGTTGAAGAGGCTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAACGGCGAAGATTACAGTGAATCGAATGCTCTATTGCCGCCCCGGCGCGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAATCTAGCGGAGATTTTGGAGTTTCAACCGAGCGATGTGAGCGACTCGGGGGACGAGGAGGACGATTCTTGCAGCTGTATAATTATGTAG MGGDSKDVEEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM Homology
BLAST of Csor.00g253920 vs. NCBI nr
Match: KAG6597344.1 (hypothetical protein SDJN03_10524, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028809.1 hypothetical protein SDJN02_09990, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 183 bits (465), Expect = 2.72e-58 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of Csor.00g253920 vs. NCBI nr
Match: XP_038897861.1 (uncharacterized protein LOC120085750 [Benincasa hispida]) HSP 1 Score: 157 bits (396), Expect = 1.04e-47 Identity = 80/95 (84.21%), Postives = 83/95 (87.37%), Query Frame = 0
BLAST of Csor.00g253920 vs. NCBI nr
Match: XP_022924268.1 (uncharacterized protein LOC111431793 [Cucurbita moschata] >XP_023526467.1 uncharacterized protein LOC111789958 [Cucurbita pepo subsp. pepo] >KAG7018809.1 hypothetical protein SDJN02_20682 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 154 bits (390), Expect = 8.52e-47 Identity = 80/95 (84.21%), Postives = 83/95 (87.37%), Query Frame = 0
BLAST of Csor.00g253920 vs. NCBI nr
Match: XP_004134046.1 (uncharacterized protein LOC101205158 [Cucumis sativus]) HSP 1 Score: 154 bits (390), Expect = 8.78e-47 Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0
BLAST of Csor.00g253920 vs. NCBI nr
Match: KAG6582410.1 (hypothetical protein SDJN03_22412, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 154 bits (390), Expect = 4.98e-46 Identity = 80/95 (84.21%), Postives = 83/95 (87.37%), Query Frame = 0
BLAST of Csor.00g253920 vs. ExPASy TrEMBL
Match: A0A6J1EBY1 (uncharacterized protein LOC111431793 OS=Cucurbita moschata OX=3662 GN=LOC111431793 PE=4 SV=1) HSP 1 Score: 154 bits (390), Expect = 4.13e-47 Identity = 80/95 (84.21%), Postives = 83/95 (87.37%), Query Frame = 0
BLAST of Csor.00g253920 vs. ExPASy TrEMBL
Match: A0A0A0L701 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134730 PE=4 SV=1) HSP 1 Score: 154 bits (390), Expect = 4.25e-47 Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0
BLAST of Csor.00g253920 vs. ExPASy TrEMBL
Match: A0A6J1INK9 (uncharacterized protein LOC111479120 OS=Cucurbita maxima OX=3661 GN=LOC111479120 PE=4 SV=1) HSP 1 Score: 152 bits (384), Expect = 6.08e-46 Identity = 79/95 (83.16%), Postives = 82/95 (86.32%), Query Frame = 0
BLAST of Csor.00g253920 vs. ExPASy TrEMBL
Match: A0A5A7U1V8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001950 PE=4 SV=1) HSP 1 Score: 146 bits (369), Expect = 9.78e-44 Identity = 76/91 (83.52%), Postives = 79/91 (86.81%), Query Frame = 0
BLAST of Csor.00g253920 vs. ExPASy TrEMBL
Match: A0A1S3AX40 (uncharacterized protein LOC103483558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483558 PE=4 SV=1) HSP 1 Score: 146 bits (369), Expect = 9.78e-44 Identity = 76/91 (83.52%), Postives = 79/91 (86.81%), Query Frame = 0
BLAST of Csor.00g253920 vs. TAIR 10
Match: AT2G33390.1 (unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 80.5 bits (197), Expect = 7.7e-16 Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 0
BLAST of Csor.00g253920 vs. TAIR 10
Match: AT1G55475.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 42.0 bits (97), Expect = 3.1e-04 Identity = 19/43 (44.19%), Postives = 26/43 (60.47%), Query Frame = 0
BLAST of Csor.00g253920 vs. TAIR 10
Match: AT1G34010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22790.2); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 41.2 bits (95), Expect = 5.2e-04 Identity = 21/45 (46.67%), Postives = 28/45 (62.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|