Csor.00g253870 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g253870
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Embryo sac development arrest protein
Location	Csor_Chr06: 9522361 .. 9522738 (+)
RNA-Seq Expression	Csor.00g253870
Synteny	Csor.00g253870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTCCATTGCCACAGCCGTGGGCTGTTATCAGCTGGGCCGTCAAGAAAGCGGAAGGAGCCGTCGGCTCTTAAAGCCGGTGAGCAGCCAATTACGTCGAACCGGCTTCTGGCCGGATACATGGCTTATGAGTTTCTGACCAAAGGAACCATCTTGGGCAGGAAGTTCGACCCGGATCGAGCCGAAGCAAGCCCATTCCCGAACGCCGTTGCTCAGTACAAGAAGCCGAAGACGGAAGCCGCGCCGCCGGAGATCATAAAAAAAGAGCATCAGATTCAGAGCTACGCCGACGTGGCAACCATTTTGAAGACGGATAAGGCCCAGATATCCGGCATCGTCAACCCGACCCAACTGGCTCGGTGGCTTACCAAATAA

mRNA sequence

ATGAGTTTCCATTGCCACAGCCGTGGGCTGTTATCAGCTGGGCCGTCAAGAAAGCGGAAGGAGCCGTCGGCTCTTAAAGCCGGTGAGCAGCCAATTACGTCGAACCGGCTTCTGGCCGGATACATGGCTTATGAGTTTCTGACCAAAGGAACCATCTTGGGCAGGAAGTTCGACCCGGATCGAGCCGAAGCAAGCCCATTCCCGAACGCCGTTGCTCAGTACAAGAAGCCGAAGACGGAAGCCGCGCCGCCGGAGATCATAAAAAAAGAGCATCAGATTCAGAGCTACGCCGACGTGGCAACCATTTTGAAGACGGATAAGGCCCAGATATCCGGCATCGTCAACCCGACCCAACTGGCTCGGTGGCTTACCAAATAA

Coding sequence (CDS)

ATGAGTTTCCATTGCCACAGCCGTGGGCTGTTATCAGCTGGGCCGTCAAGAAAGCGGAAGGAGCCGTCGGCTCTTAAAGCCGGTGAGCAGCCAATTACGTCGAACCGGCTTCTGGCCGGATACATGGCTTATGAGTTTCTGACCAAAGGAACCATCTTGGGCAGGAAGTTCGACCCGGATCGAGCCGAAGCAAGCCCATTCCCGAACGCCGTTGCTCAGTACAAGAAGCCGAAGACGGAAGCCGCGCCGCCGGAGATCATAAAAAAAGAGCATCAGATTCAGAGCTACGCCGACGTGGCAACCATTTTGAAGACGGATAAGGCCCAGATATCCGGCATCGTCAACCCGACCCAACTGGCTCGGTGGCTTACCAAATAA

Protein sequence

MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPDRAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLARWLTK

Homology

[Close]

BLAST of Csor.00g253870 vs. NCBI nr
Match: KAG6597349.1 (hypothetical protein SDJN03_10529, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028813.1 hypothetical protein SDJN02_09994, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250 bits (639), Expect = 9.41e-84
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPD 60
           MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPD
Sbjct: 1   MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPD 60

Query: 61  RAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLA 120
           RAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLA
Sbjct: 61  RAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLA 120

Query: 121 RWLTK 125
           RWLTK
Sbjct: 121 RWLTK 125

[Close]

BLAST of Csor.00g253870 vs. NCBI nr
Match: XP_023539410.1 (uncharacterized protein LOC111800062 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238 bits (608), Expect = 5.21e-79
Identity = 120/126 (95.24%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPD 60
           MSFHCHSRGLLSAGPSRKRKEPSALKAGEQP+TSNRLLAGYMAYEFLTKGTILGRKFDPD
Sbjct: 1   MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPVTSNRLLAGYMAYEFLTKGTILGRKFDPD 60

Query: 61  RAEASPFPN-AVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQL 120
           RAEASPFP  A AQYKKPKTEAAPPEIIKKEHQIQSY DVATILKTDKAQISGIVNPTQL
Sbjct: 61  RAEASPFPTIAAAQYKKPKTEAAPPEIIKKEHQIQSYTDVATILKTDKAQISGIVNPTQL 120

Query: 121 ARWLTK 125
           ARWL+K
Sbjct: 121 ARWLSK 126

[Close]

BLAST of Csor.00g253870 vs. NCBI nr
Match: XP_022924296.1 (uncharacterized protein LOC111431827 [Cucurbita moschata] >KAG6582401.1 hypothetical protein SDJN03_22403, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018804.1 hypothetical protein SDJN02_20677, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187 bits (476), Expect = 6.31e-59
Identity = 96/125 (76.80%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 1   MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPD 60
           MSFH HSRGLL AGPSRKRKEP+ALKA E P++SNRLLAGYMAYEFLTKGTILGR+F+P 
Sbjct: 1   MSFHFHSRGLLPAGPSRKRKEPAALKASEPPVSSNRLLAGYMAYEFLTKGTILGREFNPG 60

Query: 61  RAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLA 120
           RAEA   P+A AQ+KK K+EAAPPEI+KKEHQIQSY +VATILKT    I  IVNPTQL 
Sbjct: 61  RAEA--IPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNPTQLG 120

Query: 121 RWLTK 125
           RWL K
Sbjct: 121 RWLQK 123

[Close]

BLAST of Csor.00g253870 vs. NCBI nr
Match: XP_023526927.1 (uncharacterized protein LOC111790299 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184 bits (468), Expect = 1.05e-57
Identity = 95/125 (76.00%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 1   MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPD 60
           MSFH HSRGLL AGPSRKRKEP+ALKA E  ++SNRLLAGYMAYEFLTKGTILGR+F+P 
Sbjct: 1   MSFHFHSRGLLPAGPSRKRKEPAALKASEPSVSSNRLLAGYMAYEFLTKGTILGREFNPG 60

Query: 61  RAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLA 120
           RAEA   P+A AQ+KK K+EAAPPEI+KKEHQIQSY +VATILKT    I  IVNPTQL 
Sbjct: 61  RAEA--IPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNPTQLG 120

Query: 121 RWLTK 125
           RWL K
Sbjct: 121 RWLQK 123

[Close]

BLAST of Csor.00g253870 vs. NCBI nr
Match: KGN56835.1 (hypothetical protein Csa_009887 [Cucumis sativus])

HSP 1 Score: 184 bits (467), Expect = 1.86e-57
Identity = 97/130 (74.62%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 1   MSFHCHSRGLLSAGPSRKRKEPS---ALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKF 60
           MSFH HSRGLLSAGPS+KRKEPS   A KAGE  ++SNRLLAGYMAYEFLTKGT+ GRKF
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60

Query: 61  DPDRAEASPFPN--AVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVN 120
           DP R EA+P     AV Q+KKPK++AAPPEI+KKEHQIQSYA+VA ILKT  + ISGIVN
Sbjct: 61  DPPRDEATPSAASAAVIQWKKPKSDAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVN 120

Query: 121 PTQLARWLTK 125
           PTQL RWL K
Sbjct: 121 PTQLGRWLQK 130

[Close]

BLAST of Csor.00g253870 vs. ExPASy TrEMBL
Match: A0A6J1E960 (uncharacterized protein LOC111431827 OS=Cucurbita moschata OX=3662 GN=LOC111431827 PE=4 SV=1)

HSP 1 Score: 187 bits (476), Expect = 3.06e-59
Identity = 96/125 (76.80%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 1   MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPD 60
           MSFH HSRGLL AGPSRKRKEP+ALKA E P++SNRLLAGYMAYEFLTKGTILGR+F+P 
Sbjct: 1   MSFHFHSRGLLPAGPSRKRKEPAALKASEPPVSSNRLLAGYMAYEFLTKGTILGREFNPG 60

Query: 61  RAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLA 120
           RAEA   P+A AQ+KK K+EAAPPEI+KKEHQIQSY +VATILKT    I  IVNPTQL 
Sbjct: 61  RAEA--IPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNPTQLG 120

Query: 121 RWLTK 125
           RWL K
Sbjct: 121 RWLQK 123

[Close]

BLAST of Csor.00g253870 vs. ExPASy TrEMBL
Match: A0A0A0L4C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134830 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 9.00e-58
Identity = 97/130 (74.62%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 1   MSFHCHSRGLLSAGPSRKRKEPS---ALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKF 60
           MSFH HSRGLLSAGPS+KRKEPS   A KAGE  ++SNRLLAGYMAYEFLTKGT+ GRKF
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60

Query: 61  DPDRAEASPFPN--AVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVN 120
           DP R EA+P     AV Q+KKPK++AAPPEI+KKEHQIQSYA+VA ILKT  + ISGIVN
Sbjct: 61  DPPRDEATPSAASAAVIQWKKPKSDAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVN 120

Query: 121 PTQLARWLTK 125
           PTQL RWL K
Sbjct: 121 PTQLGRWLQK 130

[Close]

BLAST of Csor.00g253870 vs. ExPASy TrEMBL
Match: A0A6J1IWN8 (uncharacterized protein LOC111479265 OS=Cucurbita maxima OX=3661 GN=LOC111479265 PE=4 SV=1)

HSP 1 Score: 183 bits (465), Expect = 1.45e-57
Identity = 94/125 (75.20%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 1   MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPD 60
           MSFH H RGLL  GPSRKRKEP+ALKA E P++SNRLLAGYMAYEFLTKGTILGR+F+P 
Sbjct: 1   MSFHFHIRGLLPPGPSRKRKEPAALKASEPPVSSNRLLAGYMAYEFLTKGTILGREFNPG 60

Query: 61  RAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLA 120
           +AEA   P+A AQ+KK K+EAAPPEI+KKEHQIQSY +VATILKT  A I  IVNPTQL 
Sbjct: 61  QAEA--IPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGAHIPEIVNPTQLG 120

Query: 121 RWLTK 125
           RWL K
Sbjct: 121 RWLQK 123

[Close]

BLAST of Csor.00g253870 vs. ExPASy TrEMBL
Match: A0A5A7U1L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001830 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 7.63e-57
Identity = 97/131 (74.05%), Postives = 106/131 (80.92%), Query Frame = 0


Query: 1   MSFHCHSRGLLSAGPSRKRKEPSAL----KAGEQPITSNRLLAGYMAYEFLTKGTILGRK 60
           MSFH HSRGLLSAGPS+KRKEPS      KAGE  + SNRLLAGYMAYEFLTKGT+ GRK
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGRK 60

Query: 61  FDPDRAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQ--IQSYADVATILKTDKAQISGIV 120
           FDP R EA+P   AV+Q+KKPK EAAPPEI+KKEHQ  IQSYA+VA ILKT  + ISGIV
Sbjct: 61  FDPTRDEATPSSAAVSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGIV 120

Query: 121 NPTQLARWLTK 125
           NPTQL RWL K
Sbjct: 121 NPTQLGRWLQK 131

[Close]

BLAST of Csor.00g253870 vs. ExPASy TrEMBL
Match: A0A1S3AWH5 (uncharacterized protein LOC103483571 OS=Cucumis melo OX=3656 GN=LOC103483571 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 7.63e-57
Identity = 97/131 (74.05%), Postives = 106/131 (80.92%), Query Frame = 0


Query: 1   MSFHCHSRGLLSAGPSRKRKEPSAL----KAGEQPITSNRLLAGYMAYEFLTKGTILGRK 60
           MSFH HSRGLLSAGPS+KRKEPS      KAGE  + SNRLLAGYMAYEFLTKGT+ GRK
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGRK 60

Query: 61  FDPDRAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQ--IQSYADVATILKTDKAQISGIV 120
           FDP R EA+P   AV+Q+KKPK EAAPPEI+KKEHQ  IQSYA+VA ILKT  + ISGIV
Sbjct: 61  FDPTRDEATPSSAAVSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGIV 120

Query: 121 NPTQLARWLTK 125
           NPTQL RWL K
Sbjct: 121 NPTQLGRWLQK 131

[Close]

BLAST of Csor.00g253870 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-15
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 7   SRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPDRAEASP 66
           ++ ++   P   R   +A  A  +P+ SN+LLAGY+A+EFL  GT+ G  ++P +A+A P
Sbjct: 35  TKSIVKKTPIIPRPTTTATVALAEPVCSNQLLAGYLAHEFLNNGTLFGELWNPTKAQAGP 94

Query: 67  FPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLARWL 124
                 Q   P+      +I   +H+ + Y +VA IL+ D   + GIVNP+QLAR+L
Sbjct: 95  L---TTQSIDPRKNKPSHDIEPSDHKRRRYVEVANILRVDGTHLPGIVNPSQLARFL 148

[Close]

BLAST of Csor.00g253870 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 )

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-14
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 14  GPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPDRAEASPFPNAVAQ 73
           G SRKRK+  +     +  T N LLAGYMA+E+LT GT+LGRK     AE  P       
Sbjct: 10  GASRKRKDTES--DLREAATPNWLLAGYMAHEYLTCGTMLGRKLYSGWAEVGPL------ 69

Query: 74  YKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLARWL 124
                   +P +  + +   QSY++VA++ KTD   + G+VNPTQLA+W+
Sbjct: 70  -----VSPSPLQSREVKKARQSYSEVASVFKTDGNHVPGVVNPTQLAKWI 106

[Close]

BLAST of Csor.00g253870 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-12
Identity = 41/98 (41.84%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 27  AGEQPITSNRL-LAGYMAYEFLTKGTILGRKFDPDRAEASPFPNAVAQYKKPKTEAAPPE 86
           A  +PI SN+L LAGY+++E+LT+GT+ G +++  RA+A       +   KP     P E
Sbjct: 61  AAAEPIGSNQLMLAGYLSHEYLTQGTLFGEQWNQARAQAE------SSKIKPSHTVEPAE 120

Query: 87  IIKKEHQIQSYADVATILKTDKAQISGIVNPTQLARWL 124
             + E + + Y +VA +L++D AQ+ GIVNP QLAR+L
Sbjct: 121 --ECEPKRKRYREVANLLRSDGAQLPGIVNPAQLARFL 150

The following BLAST results are available for this feature:

BLAST of Csor.00g253870 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g253870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597349.1	9.41e-84	100.00	hypothetical protein SDJN03_10529, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023539410.1	5.21e-79	95.24	uncharacterized protein LOC111800062 [Cucurbita pepo subsp. pepo]	[more]
XP_022924296.1	6.31e-59	76.80	uncharacterized protein LOC111431827 [Cucurbita moschata] >KAG6582401.1 hypothet...	[more]
XP_023526927.1	1.05e-57	76.00	uncharacterized protein LOC111790299 [Cucurbita pepo subsp. pepo]	[more]
KGN56835.1	1.86e-57	74.62	hypothetical protein Csa_009887 [Cucumis sativus]	[more]

BLAST of Csor.00g253870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E960	3.06e-59	76.80	uncharacterized protein LOC111431827 OS=Cucurbita moschata OX=3662 GN=LOC1114318...	[more]
A0A0A0L4C1	9.00e-58	74.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134830 PE=4 SV=1	[more]
A0A6J1IWN8	1.45e-57	75.20	uncharacterized protein LOC111479265 OS=Cucurbita maxima OX=3661 GN=LOC111479265...	[more]
A0A5A7U1L2	7.63e-57	74.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AWH5	7.63e-57	74.05	uncharacterized protein LOC103483571 OS=Cucumis melo OX=3656 GN=LOC103483571 PE=...	[more]

BLAST of Csor.00g253870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G44060.1	1.8e-15	36.75	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G23440.1	4.5e-14	40.91	embryo sac development arrest 6	[more]
AT1G04000.1	7.1e-12	41.84	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR34657	EMBRYO SAC DEVELOPMENT ARREST 6	coord: 22..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g253870.m01	Csor.00g253870.m01	mRNA