Csor.00g253460 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g253460
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	40S ribosomal protein S15
Location	Csor_Chr06: 9704044 .. 9705321 (+)
RNA-Seq Expression	Csor.00g253460
Synteny	Csor.00g253460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGGCTCGAAGGATTTCTCGCATTCTGGTTTGACGTTTGTTTACTTCATCTAACCTAGATTTCGTGTTCGTAGGCGGACGATAATCCCGATGTCGCGGCGGCCGGAGGAGTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCCGTGGAGTCGATTTGGATGCTCTCCTCGACATGTCCACCGACGAGCTTGTCAAGCTCTTCACTGCTAGGGCTCGCAGAAGGTAGTTCAAATGATAAATGTAATTGGAATGATTTATTTGCTGATTTTTACTCTTCCTCTCCGTTTTCTGTTTTAGGTTCCGGAGGGGTCTGACTAGAAAGCCAATGGCTTTGATCAAGAAGCTACGCAAAGCGGTAATTGCTTCCCTTCCTATTTATGTTCCATTTTGTAACTGGAAAAGTTAATTTCATCTGTTTAAATCTGCTCTACCTGTACGTGCGTGTCTAATTCATTGGTAGCATGCTAGATAGAAAAATAGAAGTCCAACTCAATGTACCGTGCTATTATCAAATCCGCGGGTTGTATTATATGCTTTTCTTGGTTGATATAAGGGAGTGGTTTTGGGAAAGAAATTCGGTGGTTTTCCTGAAACTACTTTTAATTTCAGGTTAACGTTCGGAGTACTACTAATTCCCCGACTTTTGTAAAATGTGGTGCTTTGTTTGATTTGGTTGCCTCCCTAAATATTGTTTTGCCACAGGATTTGCTTGGGAAGTTCCCACTGTTTGAGCAATCCTCTTCTTTTTCGTTAATTCAATTTGAAATCTGTATTGAAACCGAAAGACACTCACCTACGTAGTTCTTGATGCTCCAAGAATCTGAGCGTAGCCAGAATCTCTTCCAATTATGACTAATTTGCATTTTCCCCATTGGCCTTAGAGTCTTGTGTTCAGATAAATTTACCTCTCATCTGTCCTCTATGATCGAATGTTACTGCTTACTAGTGACGTTTCACGGGTGAATAGTGGCTTGGAGAATGTGATATCAATCTCACATGTTCTTTCCCCTTTTATGTACAGAAACGTGAGGCGCCACCGGGTGAGAAGCCAGAACCTGTTAGAACTCACCTTCGTAATATGATCATAGTACCTGAAATGATCGGAAGCATCATTGGAGTTTACAATGGGAAGACCTTCAACCAGGTTGAAATCAAGCCTGAGATGATCGGCCATTACCTAGCTGAGTTTTCCATATCATACAAGCCTGTTAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTCATTCCTCTGAAGTGA

mRNA sequence

ATGGCGGACGATAATCCCGATGTCGCGGCGGCCGGAGGAGTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCCGTGGAGTCGATTTGGATGCTCTCCTCGACATGTCCACCGACGAGCTTGTCAAGCTCTTCACTGCTAGGGCTCGCAGAAGGTTCCGGAGGGGTCTGACTAGAAAGCCAATGGCTTTGATCAAGAAGCTACGCAAAGCGAAACGTGAGGCGCCACCGGGTGAGAAGCCAGAACCTGTTAGAACTCACCTTCGTAATATGATCATAGTACCTGAAATGATCGGAAGCATCATTGGAGTTTACAATGGGAAGACCTTCAACCAGGTTGAAATCAAGCCTGAGATGATCGGCCATTACCTAGCTGAGTTTTCCATATCATACAAGCCTGTTAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTCATTCCTCTGAAGTGA

Coding sequence (CDS)

ATGGCGGACGATAATCCCGATGTCGCGGCGGCCGGAGGAGTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCCGTGGAGTCGATTTGGATGCTCTCCTCGACATGTCCACCGACGAGCTTGTCAAGCTCTTCACTGCTAGGGCTCGCAGAAGGTTCCGGAGGGGTCTGACTAGAAAGCCAATGGCTTTGATCAAGAAGCTACGCAAAGCGAAACGTGAGGCGCCACCGGGTGAGAAGCCAGAACCTGTTAGAACTCACCTTCGTAATATGATCATAGTACCTGAAATGATCGGAAGCATCATTGGAGTTTACAATGGGAAGACCTTCAACCAGGTTGAAATCAAGCCTGAGATGATCGGCCATTACCTAGCTGAGTTTTCCATATCATACAAGCCTGTTAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTCATTCCTCTGAAGTGA

Protein sequence

MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK

Homology

[Close]

BLAST of Csor.00g253460 vs. ExPASy Swiss-Prot
Match: Q08112 (40S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.7e-74
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+VAAA GVPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAA-GVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g253460 vs. ExPASy Swiss-Prot
Match: Q9FY64 (40S ribosomal protein S15-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15D PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.7e-74
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+VAAA GVPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAA-GVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g253460 vs. ExPASy Swiss-Prot
Match: Q945U1 (40S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.3e-72
Identity = 136/153 (88.89%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD +  V   G  PKKRTF+KFS+RGVDLD LLDM TDELVKLF ARARRRF+RGL RK
Sbjct: 1   MADVSDAVDVGGAQPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Csor.00g253460 vs. ExPASy Swiss-Prot
Match: P31674 (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2 SV=2)

HSP 1 Score: 265.8 bits (678), Expect = 3.1e-70
Identity = 130/144 (90.28%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 10  AAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALIKKLR 69
           AAG  PKKRTF+K+S+RGVDLDALLDMSTD+LV+LF ARARRRF+RGL RKPMALIKKLR
Sbjct: 11  AAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLR 70

Query: 70  KAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 129
           KAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSI
Sbjct: 71  KAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSI 130

Query: 130 SYKPVKHGRPGIGATHSSRFIPLK 154
           SYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 131 SYKPVKHGRPGIGATHSSRFIPLK 154

[Close]

BLAST of Csor.00g253460 vs. ExPASy Swiss-Prot
Match: O65059 (40S ribosomal protein S15 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.0e-70
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD + DV      PKKRTFKKFS+RGVDLDALLDM+++ELVKLF ARARRRF+RGL R+
Sbjct: 1   MADADVDVGPV--QPKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQ 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

[Close]

BLAST of Csor.00g253460 vs. NCBI nr
Match: XP_022935167.1 (40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_022974447.1 40S ribosomal protein S15-4-like [Cucurbita maxima] >XP_023538650.1 40S ribosomal protein S15-4-like [Cucurbita pepo subsp. pepo] >KAG6597390.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028852.1 40S ribosomal protein S15 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 304 bits (778), Expect = 4.83e-104
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Csor.00g253460 vs. NCBI nr
Match: XP_008438580.1 (PREDICTED: 40S ribosomal protein S15-4 [Cucumis melo] >KAA0049301.1 40S ribosomal protein S15-4 [Cucumis melo var. makuwa] >TYK17257.1 40S ribosomal protein S15-4 [Cucumis melo var. makuwa])

HSP 1 Score: 301 bits (772), Expect = 3.97e-103
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDVAAA GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Csor.00g253460 vs. NCBI nr
Match: XP_022924839.1 (40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_022980463.1 40S ribosomal protein S15-4-like [Cucurbita maxima] >XP_023526130.1 40S ribosomal protein S15-4-like [Cucurbita pepo subsp. pepo] >KAG6582354.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018765.1 40S ribosomal protein S15 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300 bits (768), Expect = 1.62e-102
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDV AAG VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Csor.00g253460 vs. NCBI nr
Match: XP_038877091.1 (40S ribosomal protein S15-4 [Benincasa hispida])

HSP 1 Score: 297 bits (760), Expect = 2.60e-101
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDVAAAG VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAG-VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g253460 vs. NCBI nr
Match: XP_004134098.1 (40S ribosomal protein S15-4 [Cucumis sativus] >KAE8650344.1 hypothetical protein Csa_011147 [Cucumis sativus])

HSP 1 Score: 297 bits (760), Expect = 2.78e-101
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MADDNPDVAAAG-GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MADDNPDVAAA  GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR
Sbjct: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

[Close]

BLAST of Csor.00g253460 vs. ExPASy TrEMBL
Match: A0A6J1IA94 (40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111473108 PE=3 SV=1)

HSP 1 Score: 304 bits (778), Expect = 2.34e-104
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Csor.00g253460 vs. ExPASy TrEMBL
Match: A0A6J1F4T6 (40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111442119 PE=3 SV=1)

HSP 1 Score: 304 bits (778), Expect = 2.34e-104
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Csor.00g253460 vs. ExPASy TrEMBL
Match: A0A5D3CZY1 (40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001090 PE=3 SV=1)

HSP 1 Score: 301 bits (772), Expect = 1.92e-103
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDVAAA GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Csor.00g253460 vs. ExPASy TrEMBL
Match: A0A1S3AWD7 (40S ribosomal protein S15-4 OS=Cucumis melo OX=3656 GN=LOC103483644 PE=3 SV=1)

HSP 1 Score: 301 bits (772), Expect = 1.92e-103
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDVAAA GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Csor.00g253460 vs. ExPASy TrEMBL
Match: A0A6J1IZD8 (40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111479845 PE=3 SV=1)

HSP 1 Score: 300 bits (768), Expect = 7.84e-103
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDV AAG VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Csor.00g253460 vs. TAIR 10
Match: AT1G04270.1 (cytosolic ribosomal protein S15 )

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-75
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+VAAA GVPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAA-GVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g253460 vs. TAIR 10
Match: AT5G09510.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-75
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+VAAA GVPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAA-GVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g253460 vs. TAIR 10
Match: AT1G04270.2 (cytosolic ribosomal protein S15 )

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-73
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+VAAA GVPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAA-GVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRK KREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRK-KREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 151

[Close]

BLAST of Csor.00g253460 vs. TAIR 10
Match: AT5G09500.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 261.5 bits (667), Expect = 4.1e-70
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+VAAA G+ KKRTFKKFSFRGVDLDALLDMSTD+LVKLF +R RRRF RGLTRK
Sbjct: 1   MAD--PEVAAA-GIVKKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

[Close]

BLAST of Csor.00g253460 vs. TAIR 10
Match: AT5G43640.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-68
Identity = 129/148 (87.16%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 6   PDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALI 65
           P+V AA G+ KKRTFKKFSFRGVDLDALLDMS ++LVK F++R RRRF RGLTRKPMALI
Sbjct: 3   PEVVAA-GIVKKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALI 62

Query: 66  KKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLA 125
           KKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLA
Sbjct: 63  KKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLA 122

Query: 126 EFSISYKPVKHGRPGIGATHSSRFIPLK 154
           EFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 123 EFSISYKPVKHGRPGVGATNSSRFIPLK 149

The following BLAST results are available for this feature:

BLAST of Csor.00g253460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08112	2.7e-74	91.50	40S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1	[more]
Q9FY64	2.7e-74	91.50	40S ribosomal protein S15-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15D PE=2 SV=1	[more]
Q945U1	3.3e-72	88.89	40S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1	[more]
P31674	3.1e-70	90.28	40S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2...	[more]
O65059	4.0e-70	88.24	40S ribosomal protein S15 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1	[more]

BLAST of Csor.00g253460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935167.1	4.83e-104	100.00	40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_022974447.1 40S riboso...	[more]
XP_008438580.1	3.97e-103	99.35	PREDICTED: 40S ribosomal protein S15-4 [Cucumis melo] >KAA0049301.1 40S ribosoma...	[more]
XP_022924839.1	1.62e-102	98.69	40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_022980463.1 40S riboso...	[more]
XP_038877091.1	2.60e-101	99.35	40S ribosomal protein S15-4 [Benincasa hispida]	[more]
XP_004134098.1	2.78e-101	98.70	40S ribosomal protein S15-4 [Cucumis sativus] >KAE8650344.1 hypothetical protein...	[more]

BLAST of Csor.00g253460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IA94	2.34e-104	100.00	40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111473108 PE=...	[more]
A0A6J1F4T6	2.34e-104	100.00	40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111442119 P...	[more]
A0A5D3CZY1	1.92e-103	99.35	40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3AWD7	1.92e-103	99.35	40S ribosomal protein S15-4 OS=Cucumis melo OX=3656 GN=LOC103483644 PE=3 SV=1	[more]
A0A6J1IZD8	7.84e-103	98.69	40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111479845 PE=...	[more]

BLAST of Csor.00g253460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04270.1	1.9e-75	91.50	cytosolic ribosomal protein S15	[more]
AT5G09510.1	1.9e-75	91.50	Ribosomal protein S19 family protein	[more]
AT1G04270.2	1.4e-73	90.85	cytosolic ribosomal protein S15	[more]
AT5G09500.1	4.1e-70	88.24	Ribosomal protein S19 family protein	[more]
AT5G43640.1	5.0e-68	87.16	Ribosomal protein S19 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002222	Ribosomal protein S19/S15	PRINTS	PR00975	RIBOSOMALS19	coord: 106..118 score: 42.93 coord: 118..133 score: 46.98 coord: 86..105 score: 46.13
IPR002222	Ribosomal protein S19/S15	PFAM	PF00203	Ribosomal_S19	coord: 51..136 e-value: 1.7E-33 score: 114.3
IPR002222	Ribosomal protein S19/S15	PIRSF	PIRSF002144	RPS19p_RPS19a_RPS15e_RPS19o	coord: 12..153 e-value: 5.2E-38 score: 127.2
IPR002222	Ribosomal protein S19/S15	PANTHER	PTHR11880	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	coord: 2..153
IPR002222	Ribosomal protein S19/S15	HAMAP	MF_00531	Ribosomal_S19	coord: 49..142 score: 21.249146
IPR023575	Ribosomal protein S19/S15, superfamily	GENE3D	3.30.860.10	30s Ribosomal Protein S19; Chain A	coord: 11..153 e-value: 1.5E-72 score: 243.8
IPR023575	Ribosomal protein S19/S15, superfamily	SUPERFAMILY	54570	Ribosomal protein S19	coord: 56..137
IPR005713	Ribosomal protein S19A/S15e	TIGRFAM	TIGR01025	TIGR01025	coord: 20..153 e-value: 4.9E-71 score: 234.8
None	No IPR available	PANTHER	PTHR11880:SF50	LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15	coord: 2..153
IPR020934	Ribosomal protein S19 conserved site	PROSITE	PS00323	RIBOSOMAL_S19	coord: 106..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g253460.m01	Csor.00g253460.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome