Csor.00g253430 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g253430
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	PRA1 family protein
Location	Csor_Chr06: 9709056 .. 9709586 (+)
RNA-Seq Expression	Csor.00g253430
Synteny	Csor.00g253430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACCGCTGAATTCGCCGTCACTTTCAAGGAAGCCGGTCGATCCGTCATCGCCACCCGCCGTCCATGGCGGGAATTCCTCGACCCATTGTCTCTCAGCCTTCCTTCTTCCCTCTCCGACGCGACCTCTCGGATTTCTCAGAACTTGACCCGTTTCCTTTCCAATTACTGTCTTGTCGTCTTGCTTCTCATATTTCTTGGCCTCATCTACCATCCCTTTTCCATGATTGTGTTCTTCCTTGTGTTTGTTGCCTGGTTCGTCCTTTACTTCTCCCGCGACGACCCAATTAGGGTTTTTGGTTTTGAGTTGGGAGATTTTGTTTTGGTCATCATTCTTGGGTTGGCTACCGGATTGGCGCTGGCTTTGACAGGGGTTTTCGTGAATGTGCTGATTTCGCTTGCCATTGGGGCCATGGTGGTTTGTTTGCATGCGGCTTTGAAGGGCACGGAGGATGCTCTTGGGGATTTGCAAGACCCTTTTGGGGATACGCTGTTGGAGAGCCCGAGAGGTGATTACAGCGGCATCTGA

mRNA sequence

ATGTCGACCGCTGAATTCGCCGTCACTTTCAAGGAAGCCGGTCGATCCGTCATCGCCACCCGCCGTCCATGGCGGGAATTCCTCGACCCATTGTCTCTCAGCCTTCCTTCTTCCCTCTCCGACGCGACCTCTCGGATTTCTCAGAACTTGACCCGTTTCCTTTCCAATTACTGTCTTGTCGTCTTGCTTCTCATATTTCTTGGCCTCATCTACCATCCCTTTTCCATGATTGTGTTCTTCCTTGTGTTTGTTGCCTGGTTCGTCCTTTACTTCTCCCGCGACGACCCAATTAGGGTTTTTGGTTTTGAGTTGGGAGATTTTGTTTTGGTCATCATTCTTGGGTTGGCTACCGGATTGGCGCTGGCTTTGACAGGGGTTTTCGTGAATGTGCTGATTTCGCTTGCCATTGGGGCCATGGTGGTTTGTTTGCATGCGGCTTTGAAGGGCACGGAGGATGCTCTTGGGGATTTGCAAGACCCTTTTGGGGATACGCTGTTGGAGAGCCCGAGAGGTGATTACAGCGGCATCTGA

Coding sequence (CDS)

ATGTCGACCGCTGAATTCGCCGTCACTTTCAAGGAAGCCGGTCGATCCGTCATCGCCACCCGCCGTCCATGGCGGGAATTCCTCGACCCATTGTCTCTCAGCCTTCCTTCTTCCCTCTCCGACGCGACCTCTCGGATTTCTCAGAACTTGACCCGTTTCCTTTCCAATTACTGTCTTGTCGTCTTGCTTCTCATATTTCTTGGCCTCATCTACCATCCCTTTTCCATGATTGTGTTCTTCCTTGTGTTTGTTGCCTGGTTCGTCCTTTACTTCTCCCGCGACGACCCAATTAGGGTTTTTGGTTTTGAGTTGGGAGATTTTGTTTTGGTCATCATTCTTGGGTTGGCTACCGGATTGGCGCTGGCTTTGACAGGGGTTTTCGTGAATGTGCTGATTTCGCTTGCCATTGGGGCCATGGTGGTTTGTTTGCATGCGGCTTTGAAGGGCACGGAGGATGCTCTTGGGGATTTGCAAGACCCTTTTGGGGATACGCTGTTGGAGAGCCCGAGAGGTGATTACAGCGGCATCTGA

Protein sequence

MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLALALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI

Homology

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BLAST of Csor.00g253430 vs. ExPASy Swiss-Prot
Match: P93829 (PRA1 family protein D OS=Arabidopsis thaliana OX=3702 GN=PRA1D PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-30
Identity = 76/174 (43.68%), Postives = 116/174 (66.67%), Query Frame = 0


Query: 11  KEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLI 70
           KE  +S+    RPW +FLD  + S PSS++DAT+R++QNLT F  NY +++ +L+ L LI
Sbjct: 10  KETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLI 69

Query: 71  YHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGD-FVLVIILGLATGLALALTGVFVN 130
             P +++ F  V +AWF LYF+R++P+ +FGF + D  V V+++GL+ G +L  TGV++ 
Sbjct: 70  TRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIG-SLVTTGVWLR 129

Query: 131 VLISLAIGAMVVCLHAALKGTEDALG-DLQDPFGDTLLES------PRGDYSGI 177
            L ++  G +V+ LHAAL+GT+D +  DL+ P+G  L  S       RGDYSGI
Sbjct: 130 ALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSGGGNDGARGDYSGI 182

[Close]

BLAST of Csor.00g253430 vs. ExPASy Swiss-Prot
Match: Q9FRR1 (PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.3e-27
Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 11  KEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLI 70
           K+  +S+I T RPWRE LD  +LSLP    +A + +  N++ F  NY L VL ++FLGLI
Sbjct: 37  KQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLI 96

Query: 71  YHPFSMIVFFLVFVAWFVLYFSRD--DPIRVFGFELGDFVLVIILGLATGLALALTGVFV 130
           YHP SMI F +VF+ W +LYFSRD  D I + G E+ D +++++L L T LAL  T V  
Sbjct: 97  YHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGE 156

Query: 131 NVLISLAIGAMVVCLHAALKGTEDALGD 157
           NVL+SL IG ++V  H A + T+D   D
Sbjct: 157 NVLVSLIIGLLIVGAHGAFRNTDDLFLD 184

[Close]

BLAST of Csor.00g253430 vs. ExPASy Swiss-Prot
Match: Q9LIC6 (PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 61/139 (43.88%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 18  IATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLIYHPFSMI 77
           +ATRR WR   D  S+ LP  +SDA +RI  NL  F  NY +VVL++IF  LI+HP S+I
Sbjct: 33  LATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLI 92

Query: 78  VFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLALALTGVFVNVLISLAIG 137
           VF ++ V W  LYF RD+PI++F F++ D  ++I+L + T + L LT    N++ +L  G
Sbjct: 93  VFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTG 152

Query: 138 AMVVCLHAALKGTEDALGD 157
           A++V +H+ ++ TED   D
Sbjct: 153 AVLVLIHSVVRKTEDLFLD 171

[Close]

BLAST of Csor.00g253430 vs. ExPASy Swiss-Prot
Match: Q9C889 (PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.2e-21
Identity = 62/152 (40.79%), Postives = 94/152 (61.84%), Query Frame = 0


Query: 5   EFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLL 64
           E+    K   +S +ATRRPW+   D  S++LP    DA SRI  NL  F +NY + VL +
Sbjct: 20  EYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFI 79

Query: 65  IFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLALALT 124
           +FL L+YHP S+IV  ++ V W  LYF RD+P+ VFG+++ D  ++I L + T + L LT
Sbjct: 80  LFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVLIGLSVLTVVMLLLT 139

Query: 125 GVFVNVLISLAIGAMVVCLHAALKGTEDALGD 157
               N+L SL   A++V +HAA++ +++   D
Sbjct: 140 HATSNILGSLLTAAVLVLIHAAVRRSDNLFLD 171

[Close]

BLAST of Csor.00g253430 vs. ExPASy Swiss-Prot
Match: Q9LIC7 (PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.7e-20
Identity = 61/146 (41.78%), Postives = 88/146 (60.27%), Query Frame = 0


Query: 11  KEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLI 70
           K+  +  +ATRR WR   D  S  LP  +SD  SRI  NL  F SNY +V+L +IF  LI
Sbjct: 26  KQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFFSLI 85

Query: 71  YHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLALALTGVFVNV 130
           +HP S+IVF  +   W  LYF RD P++VF F++ D  ++I L + T + L LT    N+
Sbjct: 86  WHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNATFNI 145

Query: 131 LISLAIGAMVVCLHAALKGTEDALGD 157
           + +L  GA++V +HA ++ T+D   D
Sbjct: 146 VAALMAGAVLVLIHAVIRKTDDLFLD 171

[Close]

BLAST of Csor.00g253430 vs. NCBI nr
Match: KAG6597393.1 (PRA1 family protein D, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327 bits (839), Expect = 1.37e-112
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60

Query: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120
           VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA
Sbjct: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120

Query: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 176
           LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 176

[Close]

BLAST of Csor.00g253430 vs. NCBI nr
Match: XP_023521332.1 (PRA1 family protein D-like [Cucurbita pepo subsp. pepo] >XP_023521333.1 PRA1 family protein D-like [Cucurbita pepo subsp. pepo] >XP_023521334.1 PRA1 family protein D-like [Cucurbita pepo subsp. pepo] >XP_023538988.1 PRA1 family protein D-like [Cucurbita pepo subsp. pepo] >XP_023538989.1 PRA1 family protein D-like [Cucurbita pepo subsp. pepo] >XP_023538990.1 PRA1 family protein D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324 bits (831), Expect = 2.27e-111
Identity = 174/176 (98.86%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSS SDATSRISQNLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSFSDATSRISQNLTRFLSNYCLV 60

Query: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120
           VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA
Sbjct: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120

Query: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 176
           LALTGVFVNVLISLAIGA+VVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 176

[Close]

BLAST of Csor.00g253430 vs. NCBI nr
Match: XP_022935141.1 (PRA1 family protein D-like [Cucurbita moschata] >XP_022935149.1 PRA1 family protein D-like [Cucurbita moschata] >XP_022935157.1 PRA1 family protein D-like [Cucurbita moschata])

HSP 1 Score: 324 bits (831), Expect = 2.27e-111
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60

Query: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120
           VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA
Sbjct: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120

Query: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 176
           LALTGVFVNVLISLAIGAMVVCLHAALKGTEDAL DLQDPFGDTLLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALEDLQDPFGDTLLESPRGDYSGI 176

[Close]

BLAST of Csor.00g253430 vs. NCBI nr
Match: KAG7028853.1 (DNA-directed RNA polymerase V subunit 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327 bits (839), Expect = 1.71e-109
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV
Sbjct: 211 MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 270

Query: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120
           VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA
Sbjct: 271 VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 330

Query: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 176
           LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI
Sbjct: 331 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 386

[Close]

BLAST of Csor.00g253430 vs. NCBI nr
Match: XP_038877088.1 (PRA1 family protein D [Benincasa hispida])

HSP 1 Score: 301 bits (770), Expect = 4.52e-102
Identity = 160/176 (90.91%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWREFLDP +LSLPSS SDAT+RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSFSDATTRISHNLTRFLSNYCLV 60

Query: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120
           +LLLIFLGLIYHPFSMIVF LVFVAWF LYFSRDDP+RVFGFELGD VLVIILGLATGLA
Sbjct: 61  LLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPLRVFGFELGDLVLVIILGLATGLA 120

Query: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 176
           LALTGVFVNVLISLAIGA+VVCLHAAL+ TED +GDLQDPFGD LLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALRSTEDLVGDLQDPFGDALLESPRGDYSGI 176

[Close]

BLAST of Csor.00g253430 vs. ExPASy TrEMBL
Match: A0A6J1F4K5 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111442098 PE=3 SV=1)

HSP 1 Score: 324 bits (831), Expect = 1.10e-111
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60

Query: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120
           VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA
Sbjct: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120

Query: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 176
           LALTGVFVNVLISLAIGAMVVCLHAALKGTEDAL DLQDPFGDTLLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALEDLQDPFGDTLLESPRGDYSGI 176

[Close]

BLAST of Csor.00g253430 vs. ExPASy TrEMBL
Match: A0A1S3AXE4 (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103483647 PE=3 SV=1)

HSP 1 Score: 300 bits (769), Expect = 3.11e-102
Identity = 160/176 (90.91%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWREFLDP +LSLPSSLSDAT+RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120
           VLLLIFLGLIYHPFSMIVF LVFVAWF LYFSRDDPIRVFGFEL D VL+IILGLATGLA
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLATGLA 120

Query: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 176
           LALTGVFVNVLISLAIGA+VVCLHAAL+ TED +GD+QDPFGD LLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRGDYSGI 176

[Close]

BLAST of Csor.00g253430 vs. ExPASy TrEMBL
Match: A0A5D3D201 (PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001060 PE=3 SV=1)

HSP 1 Score: 300 bits (769), Expect = 3.11e-102
Identity = 160/176 (90.91%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWREFLDP +LSLPSSLSDAT+RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120
           VLLLIFLGLIYHPFSMIVF LVFVAWF LYFSRDDPIRVFGFEL D VL+IILGLATGLA
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLATGLA 120

Query: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 176
           LALTGVFVNVLISLAIGA+VVCLHAAL+ TED +GD+QDPFGD LLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRGDYSGI 176

[Close]

BLAST of Csor.00g253430 vs. ExPASy TrEMBL
Match: A0A0A0L7A7 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G143550 PE=3 SV=1)

HSP 1 Score: 300 bits (769), Expect = 3.11e-102
Identity = 160/176 (90.91%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWREFLDP +LSLPSSLSDAT+RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120
           VLLLIFLGLIYHPFSMIVF LVFVAWF LYFSRDDPIRVFGFEL D VL+IILGLATGLA
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLATGLA 120

Query: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 176
           LALTGVFVNVLISLAIGA+VVCLHAAL+ TED +GD+QDPFGD LLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRGDYSGI 176

[Close]

BLAST of Csor.00g253430 vs. ExPASy TrEMBL
Match: A0A6J1CZP3 (PRA1 family protein OS=Momordica charantia OX=3673 GN=LOC111016265 PE=3 SV=1)

HSP 1 Score: 296 bits (757), Expect = 2.10e-100
Identity = 158/176 (89.77%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 60
           MSTAEFAV+FKEAGRSVIATRRPWREFLDP +LSLPSSLSDAT++ISQNLTRFLSNYCL+
Sbjct: 1   MSTAEFAVSFKEAGRSVIATRRPWREFLDPTALSLPSSLSDATTKISQNLTRFLSNYCLL 60

Query: 61  VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLA 120
           +LLLIFLGLIYHPFSMIVF LVFVAWF LYFSRDDP+RVFGF L D VLVIILGLATGLA
Sbjct: 61  ILLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPLRVFGFVLDDLVLVIILGLATGLA 120

Query: 121 LALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 176
           LALTGVFVNVLISLAIGA+VV LHAAL+GTED LGDLQDPFGD LLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVSLHAALRGTEDLLGDLQDPFGDALLESPRGDYSGI 176

[Close]

BLAST of Csor.00g253430 vs. TAIR 10
Match: AT1G04260.1 (CAMV movement protein interacting protein 7 )

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-31
Identity = 76/174 (43.68%), Postives = 116/174 (66.67%), Query Frame = 0


Query: 11  KEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLI 70
           KE  +S+    RPW +FLD  + S PSS++DAT+R++QNLT F  NY +++ +L+ L LI
Sbjct: 10  KETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLI 69

Query: 71  YHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGD-FVLVIILGLATGLALALTGVFVN 130
             P +++ F  V +AWF LYF+R++P+ +FGF + D  V V+++GL+ G +L  TGV++ 
Sbjct: 70  TRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIG-SLVTTGVWLR 129

Query: 131 VLISLAIGAMVVCLHAALKGTEDALG-DLQDPFGDTLLES------PRGDYSGI 177
            L ++  G +V+ LHAAL+GT+D +  DL+ P+G  L  S       RGDYSGI
Sbjct: 130 ALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSGGGNDGARGDYSGI 182

[Close]

BLAST of Csor.00g253430 vs. TAIR 10
Match: AT1G08770.1 (prenylated RAB acceptor 1.E )

HSP 1 Score: 121.7 bits (304), Expect = 5.9e-28
Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 11  KEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLI 70
           K+  +S+I T RPWRE LD  +LSLP    +A + +  N++ F  NY L VL ++FLGLI
Sbjct: 37  KQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLI 96

Query: 71  YHPFSMIVFFLVFVAWFVLYFSRD--DPIRVFGFELGDFVLVIILGLATGLALALTGVFV 130
           YHP SMI F +VF+ W +LYFSRD  D I + G E+ D +++++L L T LAL  T V  
Sbjct: 97  YHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGE 156

Query: 131 NVLISLAIGAMVVCLHAALKGTEDALGD 157
           NVL+SL IG ++V  H A + T+D   D
Sbjct: 157 NVLVSLIIGLLIVGAHGAFRNTDDLFLD 184

[Close]

BLAST of Csor.00g253430 vs. TAIR 10
Match: AT3G13720.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 107.8 bits (268), Expect = 8.8e-24
Identity = 61/139 (43.88%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 18  IATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLIYHPFSMI 77
           +ATRR WR   D  S+ LP  +SDA +RI  NL  F  NY +VVL++IF  LI+HP S+I
Sbjct: 33  LATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLI 92

Query: 78  VFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLALALTGVFVNVLISLAIG 137
           VF ++ V W  LYF RD+PI++F F++ D  ++I+L + T + L LT    N++ +L  G
Sbjct: 93  VFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTG 152

Query: 138 AMVVCLHAALKGTEDALGD 157
           A++V +H+ ++ TED   D
Sbjct: 153 AVLVLIHSVVRKTEDLFLD 171

[Close]

BLAST of Csor.00g253430 vs. TAIR 10
Match: AT1G55190.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-22
Identity = 62/152 (40.79%), Postives = 94/152 (61.84%), Query Frame = 0


Query: 5   EFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLL 64
           E+    K   +S +ATRRPW+   D  S++LP    DA SRI  NL  F +NY + VL +
Sbjct: 20  EYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFI 79

Query: 65  IFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLALALT 124
           +FL L+YHP S+IV  ++ V W  LYF RD+P+ VFG+++ D  ++I L + T + L LT
Sbjct: 80  LFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVLIGLSVLTVVMLLLT 139

Query: 125 GVFVNVLISLAIGAMVVCLHAALKGTEDALGD 157
               N+L SL   A++V +HAA++ +++   D
Sbjct: 140 HATSNILGSLLTAAVLVLIHAAVRRSDNLFLD 171

[Close]

BLAST of Csor.00g253430 vs. TAIR 10
Match: AT3G13710.1 (prenylated RAB acceptor 1.F4 )

HSP 1 Score: 99.0 bits (245), Expect = 4.1e-21
Identity = 61/146 (41.78%), Postives = 88/146 (60.27%), Query Frame = 0


Query: 11  KEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLI 70
           K+  +  +ATRR WR   D  S  LP  +SD  SRI  NL  F SNY +V+L +IF  LI
Sbjct: 26  KQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFFSLI 85

Query: 71  YHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLALALTGVFVNV 130
           +HP S+IVF  +   W  LYF RD P++VF F++ D  ++I L + T + L LT    N+
Sbjct: 86  WHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNATFNI 145

Query: 131 LISLAIGAMVVCLHAALKGTEDALGD 157
           + +L  GA++V +HA ++ T+D   D
Sbjct: 146 VAALMAGAVLVLIHAVIRKTDDLFLD 171

The following BLAST results are available for this feature:

BLAST of Csor.00g253430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93829	2.7e-30	43.68	PRA1 family protein D OS=Arabidopsis thaliana OX=3702 GN=PRA1D PE=1 SV=1	[more]
Q9FRR1	8.3e-27	47.30	PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1	[more]
Q9LIC6	1.2e-22	43.88	PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1	[more]
Q9C889	5.2e-21	40.79	PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1	[more]
Q9LIC7	5.7e-20	41.78	PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1	[more]

BLAST of Csor.00g253430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597393.1	1.37e-112	100.00	PRA1 family protein D, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023521332.1	2.27e-111	98.86	PRA1 family protein D-like [Cucurbita pepo subsp. pepo] >XP_023521333.1 PRA1 fam...	[more]
XP_022935141.1	2.27e-111	99.43	PRA1 family protein D-like [Cucurbita moschata] >XP_022935149.1 PRA1 family prot...	[more]
KAG7028853.1	1.71e-109	100.00	DNA-directed RNA polymerase V subunit 7, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_038877088.1	4.52e-102	90.91	PRA1 family protein D [Benincasa hispida]	[more]

BLAST of Csor.00g253430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4K5	1.10e-111	99.43	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111442098 PE=3 SV=1	[more]
A0A1S3AXE4	3.11e-102	90.91	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103483647 PE=3 SV=1	[more]
A0A5D3D201	3.11e-102	90.91	PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G...	[more]
A0A0A0L7A7	3.11e-102	90.91	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G143550 PE=3 SV=1	[more]
A0A6J1CZP3	2.10e-100	89.77	PRA1 family protein OS=Momordica charantia OX=3673 GN=LOC111016265 PE=3 SV=1	[more]

BLAST of Csor.00g253430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04260.1	1.9e-31	43.68	CAMV movement protein interacting protein 7	[more]
AT1G08770.1	5.9e-28	47.30	prenylated RAB acceptor 1.E	[more]
AT3G13720.1	8.8e-24	43.88	PRA1 (Prenylated rab acceptor) family protein	[more]
AT1G55190.1	3.7e-22	40.79	PRA1 (Prenylated rab acceptor) family protein	[more]
AT3G13710.1	4.1e-21	41.78	prenylated RAB acceptor 1.F4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 18..153 e-value: 2.1E-40 score: 137.6
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 3..165
None	No IPR available	PANTHER	PTHR19317:SF81	PRA1 FAMILY PROTEIN D	coord: 3..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g253430.m01	Csor.00g253430.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070192	chromosome organization involved in meiotic cell cycle
biological_process	GO:0000730	DNA recombinase assembly
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0042148	strand invasion
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0000794	condensed nuclear chromosome
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0000150	DNA strand exchange activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0003697	single-stranded DNA binding