Csor.00g253210 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g253210
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	transmembrane emp24 domain-containing protein p24beta3-like
Location	Csor_Chr06: 9830859 .. 9833085 (-)
RNA-Seq Expression	Csor.00g253210
Synteny	Csor.00g253210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGAGGCTGAGAGAGACGGGATTCGGATATCTGTTGGCGGGTCTTCTTCTGGTGAGCCTATTCACCGGAATCGATTCAATTTCGGTCACTGTGAACGAGCTTGAATGCGTTTATGAGTACGTTTTGTACGAAGGCGACACTGTTTCTGGAAATTTTGTGGTGGTCGATCATGATATTTTCTGGGGCGCCGATCATCCCGGCATTGATTTCTCTGTAAATTCCTATCTTTTCTATCTTCAATCTGTTATTGTGTTTATGTTTGCATGTAGATGGATTTCATTACTGCCGATTTGTTGGTTGTGCTCGATTAAGATTGGATCTTAGATCGGGGGATCTTGGGATAGTGGGAGAGGGTTTAGTTTTTAATTTCTGATATTTCTGGGAAATTTTATTATCTTTGTTATGAAATTGGCGTGGGAAAGAATGTGAGAGCTTGTGTGTTGATTTTGACTTTTTAAAACACAGTGGAAAATTTTGCCCTTTTGTTAATTCGACGTCTAGGGTTCGTTTGTTTGAAATTATGGCTTTGAGAGATGATATGTTAGATTGATAATTGGATTCTTTATCTTGTGAGCTGCGAGATGATTCGTTATTGAACAGTTTCTGATCAATAGATCCACAATTATAAGCCCCTTTTCGAGCCTGAGCGGACTGATACCCTGTAGTTTTCTTCGTTTTTGAAATTGTATGGTTCAATTGTTCATGGTTTGTAGCATTGGCGATCTCTTTCTCCCCTTTGTTAAAATTTTTGTTTTTGTAATAACTACGACGAGTCAGGATTCTCAACTCAATTCCTTAGGTTTACTTGGTTATTGAGCGCATCTTCACAAAAGGGTTTCTAAAACGGTGGTTCAAACAATGTTTAGGAAAGTTGATGAGTTGCATTGTTGTTGTTGTTCTTCTTCTTCTTTTAATCTATGTGAAGCTACTTGTGTTCTTTCATTGTTTATGGTTGGCTGAACATTGGGGTACCTGGAATTTCTTGTCTGATTGTTTTATATCGATGATAAAATGCTGTTTGAAGATATCCTTATGTCGGTTATTTACGTGCAGGTTACATCTCCCGCAGGTAATGTGGTTCATTCCTTGAAGGAGACCTCTGGCGACAAGTTTGAGTTTAAGGCTCCTCGTAGTGGAATGTATAAATTCTGTTTTCATAATCCTTACTCGACTCCCGAGACTGTTTCTTTCTACATCCATGTGGGTCACATTCCGAACGAACATGACCTTGCTAAAGATGGTAATTGATTAACTTCTGCATTGCTAAAGTCTTGGTTTGCCTGTGAGAAGTTAACACATTTCTCTTCTCACCTTGTTTTGGTCACTTCTTGTAGAACACCTAGACCCTATAAATGTTAAGATTGCTGAGCTTAGAGAGGCATTGGAGTCGGTCACTGCTGAGCAGAAATATTTGAAAGCACGTGATGCCCGCCACCGTCACAGTATGTGGTTTATTTTTACGCATGGTTTTGGTTTTACGAATTCGTTTGTTTATGCCATTTTTGGGAATTCTTGCTAGCAAATGTTGAAAACGCGGGCATTATATTGAAATCACTTTTCTTTTTTATTACTAGTCTAATATTAATGTAGAGGCATAGGCAACTCACAAGCTCTCACATAATAAAATCGCAATCTGCCTTCATTTTACCACATTTTTAGGCTTGTTTTTGTATGCCCTAGCACCCCCCCCCCCAAAAAAAAAAAAAAACAAAATTTGATGTGAATCATTTGCGGTTAACCGAATGTCAGAATGTTAGCTTTCTGAACGTAAATGTGTGAGATTATTACTATAGCTGAACAAAGAAAGCTTGAATTTTTTAGTTCGAATTCGTGAAATGTCTTTTTTCCCATCTTCATTGTATACGAATATAGCAGTCCACACGTCAAGACTCGTGATGAAATTGGCTCTACAGTTGAGGGAGCAACAAAAGAATCTTAAATTTATTCTAGCCTATCTACTTAAGTTTTTGAATTGATTTATGGGTGATTCTATGACACACAAAAGATTTTGGTAATCTTTTTGCTACCTTTTCCTTACGCCATTGTTGCGATCAAGTTGATAACTTATTGTTTTCCTTTTGATGCAGCGAACGAAAGCACAAGAAAGCGCGTAATTTTCTATACAGTGGGAGAGTATTTGTTGCTTGCTGTTGCAAGTGGGCTACAGGTCGTTTACATTCGTCGGCTGTTCAGTAAGTCAGTTGCATATAACCGGGTGTGA

mRNA sequence

ATGGAAAGGAGGCTGAGAGAGACGGGATTCGGATATCTGTTGGCGGGTCTTCTTCTGGTGAGCCTATTCACCGGAATCGATTCAATTTCGGTCACTGTGAACGAGCTTGAATGCGTTTATGAGTACGTTTTGTACGAAGGCGACACTGTTTCTGGAAATTTTGTGGTGGTCGATCATGATATTTTCTGGGGCGCCGATCATCCCGGCATTGATTTCTCTGTTACATCTCCCGCAGGTAATGTGGTTCATTCCTTGAAGGAGACCTCTGGCGACAAGTTTGAGTTTAAGGCTCCTCGTAGTGGAATGTATAAATTCTGTTTTCATAATCCTTACTCGACTCCCGAGACTGTTTCTTTCTACATCCATGTGGGTCACATTCCGAACGAACATGACCTTGCTAAAGATGAACACCTAGACCCTATAAATGTTAAGATTGCTGAGCTTAGAGAGGCATTGGAGTCGGTCACTGCTGAGCAGAAATATTTGAAAGCACGTGATGCCCGCCACCGTCACACGAACGAAAGCACAAGAAAGCGCGTAATTTTCTATACAGTGGGAGAGTATTTGTTGCTTGCTGTTGCAAGTGGGCTACAGGTCGTTTACATTCGTCGGCTGTTCAGTAAGTCAGTTGCATATAACCGGGTGTGA

Coding sequence (CDS)

ATGGAAAGGAGGCTGAGAGAGACGGGATTCGGATATCTGTTGGCGGGTCTTCTTCTGGTGAGCCTATTCACCGGAATCGATTCAATTTCGGTCACTGTGAACGAGCTTGAATGCGTTTATGAGTACGTTTTGTACGAAGGCGACACTGTTTCTGGAAATTTTGTGGTGGTCGATCATGATATTTTCTGGGGCGCCGATCATCCCGGCATTGATTTCTCTGTTACATCTCCCGCAGGTAATGTGGTTCATTCCTTGAAGGAGACCTCTGGCGACAAGTTTGAGTTTAAGGCTCCTCGTAGTGGAATGTATAAATTCTGTTTTCATAATCCTTACTCGACTCCCGAGACTGTTTCTTTCTACATCCATGTGGGTCACATTCCGAACGAACATGACCTTGCTAAAGATGAACACCTAGACCCTATAAATGTTAAGATTGCTGAGCTTAGAGAGGCATTGGAGTCGGTCACTGCTGAGCAGAAATATTTGAAAGCACGTGATGCCCGCCACCGTCACACGAACGAAAGCACAAGAAAGCGCGTAATTTTCTATACAGTGGGAGAGTATTTGTTGCTTGCTGTTGCAAGTGGGCTACAGGTCGTTTACATTCGTCGGCTGTTCAGTAAGTCAGTTGCATATAACCGGGTGTGA

Protein sequence

MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHDIFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFYIHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVIFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV

Homology

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BLAST of Csor.00g253210 vs. ExPASy Swiss-Prot
Match: Q9LIL4 (Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana OX=3702 GN=At3g22845 PE=2 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 9.9e-99
Identity = 177/215 (82.33%), Postives = 195/215 (90.70%), Query Frame = 0


Query: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60
           MERR  +    ++L GL+L++    I S+SVTVN+ ECV EYVLYEGDTVSGNFVVVDHD
Sbjct: 1   MERRQAKIHV-FVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHD 60

Query: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120
           IFWG+DHPG+DF+VTSPAGN+V +LK TSGDKFEFKAP+SGMYKFCFHNPYSTPETVSFY
Sbjct: 61  IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFY 120

Query: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180
           IHVGHIPNEHDLAKDEHLDP+NVKIAELREALESV AEQKYLKARD RHRHTNESTRKRV
Sbjct: 121 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 180

Query: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 216
           IFYTVGEY+ LA ASGLQV+YIR+LFSKSVAYNRV
Sbjct: 181 IFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

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BLAST of Csor.00g253210 vs. ExPASy Swiss-Prot
Match: Q9S7M9 (Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana OX=3702 GN=At3g07680 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.5e-26
Identity = 70/203 (34.48%), Postives = 104/203 (51.23%), Query Frame = 0


Query: 13  LLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHDIFWGADHPGIDF 72
           +L GLL    F     I   ++  EC      YEGDT+  +FVV+  D  W  +  G+D 
Sbjct: 8   VLLGLLW--SFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDL 67

Query: 73  SVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFYIHVGHIPNEHDL 132
            +  P G  +H  +E    K +F   + G+Y+FCF N     ET+ F + +GH       
Sbjct: 68  VIHGPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQH 127

Query: 133 AKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVIFYTVGEYLLLA 192
           AKDEH  P+  +I++L EAL ++  EQ +L+A+  R    NE+  KR +   + E   L 
Sbjct: 128 AKDEHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALI 187

Query: 193 VASGLQVVYIRRLFSKSVAYNRV 216
            AS LQV  +RRLF + +  +RV
Sbjct: 188 GASFLQVYLLRRLFERKLGMSRV 208

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BLAST of Csor.00g253210 vs. ExPASy Swiss-Prot
Match: Q769F9 (Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum OX=44689 GN=empA PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 67/198 (33.84%), Postives = 105/198 (53.03%), Query Frame = 0


Query: 13  LLAGLLLVSLFTGIDSIS--VTVNELECVYEYVLYEGDTVSGNFVVVDHDIFWGADHPGI 72
           L+  LL ++  + ++S S  V+    EC+YE +      V  +F  +   I  G +   I
Sbjct: 9   LVIALLCIASNSIVESFSFKVSAKVEECIYEEI-----GVDLSFTAMFQVIQGGFN--DI 68

Query: 73  DFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYS--TPETVSFYIHVGHIPN 132
           DF++ SP   +V+S +  S      ++  +G+Y FCF N  S  T +TVSF + VG    
Sbjct: 69  DFTIISPDKRIVYSGQRESEGTKTLRSSFAGVYSFCFSNKMSSLTDKTVSFILSVGESSP 128

Query: 133 EHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVIFYTVGEY 192
             ++AK + L PI   I  L + + +V  EQ Y K R+A HR+T EST  RV++++V E 
Sbjct: 129 IREIAKKKDLTPIERSIMTLSDGVIAVKNEQNYFKMREAAHRNTAESTNSRVLWWSVFEA 188

Query: 193 LLLAVASGLQVVYIRRLF 207
            +L   S  Q+ Y+RR F
Sbjct: 189 FVLIALSIWQIYYLRRFF 199

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BLAST of Csor.00g253210 vs. ExPASy Swiss-Prot
Match: A7SXK3 (Transmembrane emp24 domain-containing protein OS=Nematostella vectensis OX=45351 GN=v1g194562 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.7e-14
Identity = 42/139 (30.22%), Postives = 75/139 (53.96%), Query Frame = 0


Query: 70  IDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYS--TPETVSFYIHVGHIP 129
           ID  +  P   V++S +  +  K+ F A   G Y +CF N  S  TP+ + F + +G  P
Sbjct: 59  IDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMTPKVLKFSMDIGEAP 118

Query: 130 NEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVIFYTVGE 189
            +     +   D ++  +++L EA+  V  EQ+Y++ R+  HR  N++T  RV++++  E
Sbjct: 119 KDTSKEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSINDNTNSRVVWWSFFE 178

Query: 190 YLLLAVASGLQVVYIRRLF 207
            L+L   +  QV Y++R F
Sbjct: 179 SLVLVAMTLGQVYYLKRFF 197

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BLAST of Csor.00g253210 vs. ExPASy Swiss-Prot
Match: Q9Y3B3 (Transmembrane emp24 domain-containing protein 7 OS=Homo sapiens OX=9606 GN=TMED7 PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-13
Identity = 66/203 (32.51%), Postives = 98/203 (48.28%), Query Frame = 0


Query: 13  LLAGLLLVSLFTGIDSISVTV--NELECVYEYVLYEGDTVSGNFVVVDHDIFWGADHPGI 72
           LLA LLLV    G   I+  +  N  +C YE      D   G    ++  +  G  H  +
Sbjct: 21  LLALLLLVPGPGGASEITFELPDNAKQCFYE------DIAQGTKCTLEFQVITGG-HYDV 80

Query: 73  DFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYS--TPETVSFYIHVGH--- 132
           D  +  P G V++   +   D F F A ++G YKFCF N +S  T +TV F   VG    
Sbjct: 81  DCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPP 140

Query: 133 -IPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVIFYT 192
             P+E+ ++    ++   V I    EAL+SV   Q + + R+A+ R   E    RV +++
Sbjct: 141 LFPSENRVSALTQMESACVSI---HEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWS 200

Query: 193 VGEYLLLAVASGLQVVYIRRLFS 208
           VGE L+L V S  QV  ++  FS
Sbjct: 201 VGEALILLVVSIGQVFLLKSFFS 213

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BLAST of Csor.00g253210 vs. NCBI nr
Match: XP_022939384.1 (transmembrane emp24 domain-containing protein p24beta3-like [Cucurbita moschata] >KAG6597415.1 Transmembrane emp24 domain-containing protein p24beta3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028874.1 Transmembrane emp24 domain-containing protein p24beta3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 427 bits (1097), Expect = 1.23e-150
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60
           MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD
Sbjct: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60

Query: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120
           IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY
Sbjct: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120

Query: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180
           IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV
Sbjct: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180

Query: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215
           IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV
Sbjct: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215

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BLAST of Csor.00g253210 vs. NCBI nr
Match: XP_023538709.1 (transmembrane emp24 domain-containing protein p24beta3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 423 bits (1088), Expect = 2.90e-149
Identity = 213/215 (99.07%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60
           MERRLRETGFGYLLAGLLL SLF GIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD
Sbjct: 1   MERRLRETGFGYLLAGLLLASLFAGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60

Query: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120
           IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY
Sbjct: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120

Query: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180
           IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV
Sbjct: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180

Query: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215
           IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV
Sbjct: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215

[Close]

BLAST of Csor.00g253210 vs. NCBI nr
Match: XP_022974395.1 (transmembrane emp24 domain-containing protein p24beta3-like [Cucurbita maxima])

HSP 1 Score: 422 bits (1084), Expect = 1.18e-148
Identity = 213/215 (99.07%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60
           MERRLRETG GYLLAGLLLVSLF GIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD
Sbjct: 1   MERRLRETGCGYLLAGLLLVSLFAGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60

Query: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120
           IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY
Sbjct: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120

Query: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180
           IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV
Sbjct: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180

Query: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215
           IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV
Sbjct: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215

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BLAST of Csor.00g253210 vs. NCBI nr
Match: XP_038897452.1 (transmembrane emp24 domain-containing protein p24beta3 [Benincasa hispida])

HSP 1 Score: 409 bits (1050), Expect = 1.80e-143
Identity = 205/215 (95.35%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60
           MERR RE G GYLLAGLLLVSL   IDSISVTVNE+ECVYEYVLYEGDTVSGNFVVVDHD
Sbjct: 1   MERRAREKGIGYLLAGLLLVSLIARIDSISVTVNEIECVYEYVLYEGDTVSGNFVVVDHD 60

Query: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120
           IFWGADHPGIDF+VTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY
Sbjct: 61  IFWGADHPGIDFTVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120

Query: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180
           IHVGHIPNEH+LAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV
Sbjct: 121 IHVGHIPNEHNLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180

Query: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215
           IFYTVGEYLLLAVASGLQV+YIRRLFSKSVAYNRV
Sbjct: 181 IFYTVGEYLLLAVASGLQVIYIRRLFSKSVAYNRV 215

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BLAST of Csor.00g253210 vs. NCBI nr
Match: XP_008438614.1 (PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Cucumis melo])

HSP 1 Score: 404 bits (1038), Expect = 1.22e-141
Identity = 202/215 (93.95%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60
           MERR+RE G GYLLA LLL+SL  GIDSISVTVNE+ECVYEYVLYEGD+VSGNFVVVDHD
Sbjct: 1   MERRVREKGLGYLLAALLLLSLIAGIDSISVTVNEIECVYEYVLYEGDSVSGNFVVVDHD 60

Query: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120
           IFWGADHPGIDF+VTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY
Sbjct: 61  IFWGADHPGIDFTVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120

Query: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180
           IHVGHIPNE+D AKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV
Sbjct: 121 IHVGHIPNENDHAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180

Query: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215
           IFYTVGEYLLLAVASGLQV+YIRRLFSKSVAYNRV
Sbjct: 181 IFYTVGEYLLLAVASGLQVIYIRRLFSKSVAYNRV 215

[Close]

BLAST of Csor.00g253210 vs. ExPASy TrEMBL
Match: A0A6J1FH03 (transmembrane emp24 domain-containing protein p24beta3-like OS=Cucurbita moschata OX=3662 GN=LOC111445313 PE=3 SV=1)

HSP 1 Score: 427 bits (1097), Expect = 5.95e-151
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60
           MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD
Sbjct: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60

Query: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120
           IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY
Sbjct: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120

Query: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180
           IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV
Sbjct: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180

Query: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215
           IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV
Sbjct: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215

[Close]

BLAST of Csor.00g253210 vs. ExPASy TrEMBL
Match: A0A6J1IDU7 (transmembrane emp24 domain-containing protein p24beta3-like OS=Cucurbita maxima OX=3661 GN=LOC111473076 PE=3 SV=1)

HSP 1 Score: 422 bits (1084), Expect = 5.72e-149
Identity = 213/215 (99.07%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60
           MERRLRETG GYLLAGLLLVSLF GIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD
Sbjct: 1   MERRLRETGCGYLLAGLLLVSLFAGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60

Query: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120
           IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY
Sbjct: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120

Query: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180
           IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV
Sbjct: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180

Query: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215
           IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV
Sbjct: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215

[Close]

BLAST of Csor.00g253210 vs. ExPASy TrEMBL
Match: A0A1S3AWG7 (transmembrane emp24 domain-containing protein p24beta3 OS=Cucumis melo OX=3656 GN=LOC103483671 PE=3 SV=1)

HSP 1 Score: 404 bits (1038), Expect = 5.89e-142
Identity = 202/215 (93.95%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60
           MERR+RE G GYLLA LLL+SL  GIDSISVTVNE+ECVYEYVLYEGD+VSGNFVVVDHD
Sbjct: 1   MERRVREKGLGYLLAALLLLSLIAGIDSISVTVNEIECVYEYVLYEGDSVSGNFVVVDHD 60

Query: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120
           IFWGADHPGIDF+VTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY
Sbjct: 61  IFWGADHPGIDFTVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120

Query: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180
           IHVGHIPNE+D AKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV
Sbjct: 121 IHVGHIPNENDHAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180

Query: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215
           IFYTVGEYLLLAVASGLQV+YIRRLFSKSVAYNRV
Sbjct: 181 IFYTVGEYLLLAVASGLQVIYIRRLFSKSVAYNRV 215

[Close]

BLAST of Csor.00g253210 vs. ExPASy TrEMBL
Match: A0A5A7U264 (Transmembrane emp24 domain-containing protein p24beta3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00810 PE=3 SV=1)

HSP 1 Score: 403 bits (1036), Expect = 1.19e-141
Identity = 202/215 (93.95%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60
           MERR RE G GYLLA LLL+SL  GIDSISVTVNE+ECVYEYVLYEGD+VSGNFVVVDHD
Sbjct: 1   MERRAREKGLGYLLAALLLLSLIAGIDSISVTVNEIECVYEYVLYEGDSVSGNFVVVDHD 60

Query: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120
           IFWGADHPGIDF+VTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY
Sbjct: 61  IFWGADHPGIDFTVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120

Query: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180
           IHVGHIPNE+D AKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV
Sbjct: 121 IHVGHIPNENDHAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180

Query: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215
           IFYTVGEYLLLAVASGLQV+YIRRLFSKSVAYNRV
Sbjct: 181 IFYTVGEYLLLAVASGLQVIYIRRLFSKSVAYNRV 215

[Close]

BLAST of Csor.00g253210 vs. ExPASy TrEMBL
Match: A0A6J1C917 (transmembrane emp24 domain-containing protein p24beta3 OS=Momordica charantia OX=3673 GN=LOC111009500 PE=3 SV=1)

HSP 1 Score: 401 bits (1030), Expect = 1.05e-140
Identity = 203/217 (93.55%), Postives = 207/217 (95.39%), Query Frame = 0


Query: 1   MERRLR--ETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVD 60
           MERR R  E  FGYLLAGLLLVSL  GIDSISVTVNE+ECVYEYVLYEGDTVSGNFVVVD
Sbjct: 1   MERRQRQRERRFGYLLAGLLLVSLIAGIDSISVTVNEIECVYEYVLYEGDTVSGNFVVVD 60

Query: 61  HDIFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVS 120
           HDIFWGADHPGIDF+VTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVS
Sbjct: 61  HDIFWGADHPGIDFTVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVS 120

Query: 121 FYIHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRK 180
           F+IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARD RHRHTNESTRK
Sbjct: 121 FHIHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDTRHRHTNESTRK 180

Query: 181 RVIFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 215
           RVIFYTVGEYLLLAV SGLQV+YIRRLFSKSV YNRV
Sbjct: 181 RVIFYTVGEYLLLAVVSGLQVIYIRRLFSKSVGYNRV 217

[Close]

BLAST of Csor.00g253210 vs. TAIR 10
Match: AT3G22845.1 (emp24/gp25L/p24 family/GOLD family protein )

HSP 1 Score: 360.9 bits (925), Expect = 7.0e-100
Identity = 177/215 (82.33%), Postives = 195/215 (90.70%), Query Frame = 0


Query: 1   MERRLRETGFGYLLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHD 60
           MERR  +    ++L GL+L++    I S+SVTVN+ ECV EYVLYEGDTVSGNFVVVDHD
Sbjct: 1   MERRQAKIHV-FVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHD 60

Query: 61  IFWGADHPGIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120
           IFWG+DHPG+DF+VTSPAGN+V +LK TSGDKFEFKAP+SGMYKFCFHNPYSTPETVSFY
Sbjct: 61  IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFY 120

Query: 121 IHVGHIPNEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRV 180
           IHVGHIPNEHDLAKDEHLDP+NVKIAELREALESV AEQKYLKARD RHRHTNESTRKRV
Sbjct: 121 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 180

Query: 181 IFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV 216
           IFYTVGEY+ LA ASGLQV+YIR+LFSKSVAYNRV
Sbjct: 181 IFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

[Close]

BLAST of Csor.00g253210 vs. TAIR 10
Match: AT3G07680.1 (emp24/gp25L/p24 family/GOLD family protein )

HSP 1 Score: 119.0 bits (297), Expect = 4.6e-27
Identity = 70/203 (34.48%), Postives = 104/203 (51.23%), Query Frame = 0


Query: 13  LLAGLLLVSLFTGIDSISVTVNELECVYEYVLYEGDTVSGNFVVVDHDIFWGADHPGIDF 72
           +L GLL    F     I   ++  EC      YEGDT+  +FVV+  D  W  +  G+D 
Sbjct: 8   VLLGLLW--SFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDL 67

Query: 73  SVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFYIHVGHIPNEHDL 132
            +  P G  +H  +E    K +F   + G+Y+FCF N     ET+ F + +GH       
Sbjct: 68  VIHGPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQH 127

Query: 133 AKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVIFYTVGEYLLLA 192
           AKDEH  P+  +I++L EAL ++  EQ +L+A+  R    NE+  KR +   + E   L 
Sbjct: 128 AKDEHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALI 187

Query: 193 VASGLQVVYIRRLFSKSVAYNRV 216
            AS LQV  +RRLF + +  +RV
Sbjct: 188 GASFLQVYLLRRLFERKLGMSRV 208

[Close]

BLAST of Csor.00g253210 vs. TAIR 10
Match: AT1G57620.1 (emp24/gp25L/p24 family/GOLD family protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-13
Identity = 56/205 (27.32%), Postives = 102/205 (49.76%), Query Frame = 0


Query: 13  LLAGLLLVSLFTGIDSISVTVNEL--ECVYEYVLYEGDTVSGNFVVV--DHDIFWGADHP 72
           +L   L+ SL    +++ +TV     +CV E +      V  +++V+  +H IF     P
Sbjct: 10  ILLSALIFSLSPICEAVWLTVPHTGSKCVSEEI-QSNVIVLADYLVISEEHSIF-----P 69

Query: 73  GIDFSVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFYIHV----G 132
            +   VT+P G V+H  + T+  +F F    SG Y  CF     +     F I++    G
Sbjct: 70  TVSVKVTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTG 129

Query: 133 HIPNEHD-LAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVIFY 192
               + D +A+ E ++ + ++  +L  A+E++     YL+ R+A  R  +E T  RV +Y
Sbjct: 130 IAAKDWDSIARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSRVAWY 189

Query: 193 TVGEYLLLAVASGLQVVYIRRLFSK 209
           ++    +  V SGLQ++Y+++ F K
Sbjct: 190 SIMSLGICIVVSGLQILYLKQYFEK 208

The following BLAST results are available for this feature:

BLAST of Csor.00g253210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIL4	9.9e-99	82.33	Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana O...	[more]
Q9S7M9	6.5e-26	34.48	Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana O...	[more]
Q769F9	1.1e-17	33.84	Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum OX=4...	[more]
A7SXK3	5.7e-14	30.22	Transmembrane emp24 domain-containing protein OS=Nematostella vectensis OX=45351...	[more]
Q9Y3B3	1.3e-13	32.51	Transmembrane emp24 domain-containing protein 7 OS=Homo sapiens OX=9606 GN=TMED7...	[more]

BLAST of Csor.00g253210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939384.1	1.23e-150	100.00	transmembrane emp24 domain-containing protein p24beta3-like [Cucurbita moschata]...	[more]
XP_023538709.1	2.90e-149	99.07	transmembrane emp24 domain-containing protein p24beta3-like [Cucurbita pepo subs...	[more]
XP_022974395.1	1.18e-148	99.07	transmembrane emp24 domain-containing protein p24beta3-like [Cucurbita maxima]	[more]
XP_038897452.1	1.80e-143	95.35	transmembrane emp24 domain-containing protein p24beta3 [Benincasa hispida]	[more]
XP_008438614.1	1.22e-141	93.95	PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Cucumis melo]	[more]

BLAST of Csor.00g253210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FH03	5.95e-151	100.00	transmembrane emp24 domain-containing protein p24beta3-like OS=Cucurbita moschat...	[more]
A0A6J1IDU7	5.72e-149	99.07	transmembrane emp24 domain-containing protein p24beta3-like OS=Cucurbita maxima ...	[more]
A0A1S3AWG7	5.89e-142	93.95	transmembrane emp24 domain-containing protein p24beta3 OS=Cucumis melo OX=3656 G...	[more]
A0A5A7U264	1.19e-141	93.95	Transmembrane emp24 domain-containing protein p24beta3 OS=Cucumis melo var. maku...	[more]
A0A6J1C917	1.05e-140	93.55	transmembrane emp24 domain-containing protein p24beta3 OS=Momordica charantia OX...	[more]

BLAST of Csor.00g253210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22845.1	7.0e-100	82.33	emp24/gp25L/p24 family/GOLD family protein	[more]
AT3G07680.1	4.6e-27	34.48	emp24/gp25L/p24 family/GOLD family protein	[more]
AT1G57620.1	1.3e-13	27.32	emp24/gp25L/p24 family/GOLD family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 145..165
None	No IPR available	PANTHER	PTHR22811:SF169	BNAA01G24430D PROTEIN	coord: 13..211
IPR009038	GOLD domain	SMART	SM01190	EMP24_GP25L_2	coord: 28..207 e-value: 1.3E-55 score: 200.8
IPR009038	GOLD domain	PFAM	PF01105	EMP24_GP25L	coord: 31..206 e-value: 3.9E-44 score: 150.8
IPR009038	GOLD domain	PROSITE	PS50866	GOLD	coord: 36..123 score: 16.566895
IPR015720	Transmembrane emp24 domain-containing protein	PANTHER	PTHR22811	TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN	coord: 13..211
IPR036598	GOLD domain superfamily	SUPERFAMILY	101576	Supernatant protein factor (SPF), C-terminal domain	coord: 44..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g253210.m01	Csor.00g253210.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0030134	COPII-coated ER to Golgi transport vesicle
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005793	endoplasmic reticulum-Golgi intermediate compartment
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane