Csor.00g252870 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g252870
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr06: 9976489 .. 9976804 (-)
RNA-Seq ExpressionCsor.00g252870
SyntenyCsor.00g252870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCCCCCGAAAAACGTAAGTTCCTTCCCTTTCGAACTCGCTTTCGTTCATGTTTTTTGGCTGCAATGCCACCATTTCCAGCTTTGAAGTTCCAAGTTTTTTCATTTTCTGGGGTTGTTTTTCAATGCAGGAAGAGGGATATATATTCTGTATGAGGATGTAAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATCTTAGTGGAATCACACACTCCATACAACAAAACAATGAAACTTTCAGCCTCCTAA

mRNA sequence

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCCCCCGAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTAAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATCTTAGTGGAATCACACACTCCATACAACAAAACAATGAAACTTTCAGCCTCCTAA

Coding sequence (CDS)

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCCCCCGAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTAAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATCTTAGTGGAATCACACACTCCATACAACAAAACAATGAAACTTTCAGCCTCCTAA

Protein sequence

MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPYNKTMKLSAS
Homology
BLAST of Csor.00g252870 vs. NCBI nr
Match: KAG6597448.1 (hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143 bits (361), Expect = 3.42e-43
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPYNKT 60
          MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPYNKT
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPYNKT 60

Query: 61 MKLSAS 66
          MKLSAS
Sbjct: 61 MKLSAS 66

BLAST of Csor.00g252870 vs. NCBI nr
Match: KGN56989.1 (hypothetical protein Csa_010650 [Cucumis sativus])

HSP 1 Score: 123 bits (308), Expect = 3.69e-35
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 56
          MGWLQSLFSPLKKLWFRLHSSP+KRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 56

BLAST of Csor.00g252870 vs. NCBI nr
Match: POO02187.1 (hypothetical protein TorRG33x02_019710 [Trema orientale])

HSP 1 Score: 115 bits (287), Expect = 5.77e-32
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHT 55
          MGWLQSLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCP EDVHVLWSILVESHT
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVESHT 55

BLAST of Csor.00g252870 vs. NCBI nr
Match: PON80087.1 (hypothetical protein PanWU01x14_005370 [Parasponia andersonii])

HSP 1 Score: 115 bits (287), Expect = 5.77e-32
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHT 55
          MGWLQSLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCP EDVHVLWSILVESHT
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVESHT 55

BLAST of Csor.00g252870 vs. NCBI nr
Match: RXH80416.1 (hypothetical protein DVH24_041563 [Malus domestica])

HSP 1 Score: 115 bits (287), Expect = 6.77e-32
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHT 55
          MGWL SLFSPLKK+WFRLHS P+KRRGIYILYEDVKSCPCEDVHVLWSILVE+HT
Sbjct: 1  MGWLHSLFSPLKKMWFRLHSGPKKRRGIYILYEDVKSCPCEDVHVLWSILVEAHT 55

BLAST of Csor.00g252870 vs. ExPASy TrEMBL
Match: A0A0A0L7K5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147230 PE=4 SV=1)

HSP 1 Score: 123 bits (308), Expect = 1.79e-35
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 56
          MGWLQSLFSPLKKLWFRLHSSP+KRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 56

BLAST of Csor.00g252870 vs. ExPASy TrEMBL
Match: A0A2P5E3G9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_005370 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 2.80e-32
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHT 55
          MGWLQSLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCP EDVHVLWSILVESHT
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVESHT 55

BLAST of Csor.00g252870 vs. ExPASy TrEMBL
Match: A0A2P5FWQ0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_019710 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 2.80e-32
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHT 55
          MGWLQSLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCP EDVHVLWSILVESHT
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVESHT 55

BLAST of Csor.00g252870 vs. ExPASy TrEMBL
Match: A0A498IAF8 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041563 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 3.28e-32
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHT 55
          MGWL SLFSPLKK+WFRLHS P+KRRGIYILYEDVKSCPCEDVHVLWSILVE+HT
Sbjct: 1  MGWLHSLFSPLKKMWFRLHSGPKKRRGIYILYEDVKSCPCEDVHVLWSILVEAHT 55

BLAST of Csor.00g252870 vs. ExPASy TrEMBL
Match: A0A2G3CT74 (Uncharacterized protein (Fragment) OS=Capsicum chinense OX=80379 GN=BC332_07036 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 5.36e-32
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESH 54
          MGWLQSLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCPCEDV VLWSILVESH
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESH 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6597448.13.42e-43100.00hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN56989.13.69e-3598.21hypothetical protein Csa_010650 [Cucumis sativus][more]
POO02187.15.77e-3294.55hypothetical protein TorRG33x02_019710 [Trema orientale][more]
PON80087.15.77e-3294.55hypothetical protein PanWU01x14_005370 [Parasponia andersonii][more]
RXH80416.16.77e-3290.91hypothetical protein DVH24_041563 [Malus domestica][more]
Match NameE-valueIdentityDescription
A0A0A0L7K51.79e-3598.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147230 PE=4 SV=1[more]
A0A2P5E3G92.80e-3294.55Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_005370 PE... [more]
A0A2P5FWQ02.80e-3294.55Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_019710 PE=4 SV... [more]
A0A498IAF83.28e-3290.91Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041563 PE=4 SV=1[more]
A0A2G3CT745.36e-3294.44Uncharacterized protein (Fragment) OS=Capsicum chinense OX=80379 GN=BC332_07036 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33181OS01G0778500 PROTEINcoord: 1..59
NoneNo IPR availablePANTHERPTHR33181:SF7OS07G0572400 PROTEINcoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g252870.m01Csor.00g252870.m01mRNA