Csor.00g252400 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g252400
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	F-box-like domain-containing protein
Location	Csor_Chr06: 10223231 .. 10225180 (-)
RNA-Seq Expression	Csor.00g252400
Synteny	Csor.00g252400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTGCTCCATCTTCCACTTGATGTTGCACTGAAAATTGCTTCTTCTCTTCAGGTTCAAGCGGAGTTTTGTATCATTCTGATCTTCTTGTTTTACTTGAATGTTCTTTGGGATTAATCGATTTTTCTCTGTGGATTTTGGGCTGTGATGAAGGCATCGGACATTTGTGCTTTGGGCTGTTGCTCGCGGTTATGTCGGGAAATTTTCGATTCCGATTGTTTGTGGGAGTCTCTTGCAAGAGAAAGATGGCCTTATATCTATGCTTCTTCATCTACTGGTTCTTCTTCGTCAACTCCTGCAAAATTCCCCATATCCATGGTGCTCTTTTCATATCTTAATCTCCTTTTTTTTTTTTGGACCTCGGTTAATTATTTACCATATTGGATTATCCATTTCATGGTTACTATATTTAGGATTCTTGAAATCAATTGAGAGGTTGTTTTTTTGTTCTTTCTGCTTCGTAATTCAAATGTAGCTGTCTCTATCTGAAATGGTTGATTATTTAGTGAAACATACGGCGGATATATCTTAGTTATTTCACCATCACTTGAAGTCATCTTCATGTTATTTCATTGGCCTTATGATCATCCTATGATGTGTTAAGTATCTCATTTGTGAATTTACGTGTATTTCTTAGTTTCTTGAAAGCAATGAAGAGATTTGAAAACTTTTATGTTCAATAGTTGAATGAGCCCTTTCGAATTTTCTTCATCCCCGTATGTAATGATTTGAACAGACATTGGATATTTATCTTGAGTGGACTTAAGTTGGATGTTGATCTTGAGTCTTTTGTTGAATTCATTGGTATAATTCTGTTTGTGAACGAACAAAATGAAACGTCTTCCAGGGATGGAAAAGCTTTTACATCCTGAGGCATATTGAGATATTGGGAAGAGCCCAAGCAGCAGTCAAGTTTATAGAACAATGCCCTCCTTCGACACCGATTGAGGGTGGAGACTATCTCAGGACAATACTCGGCTTGCGGGATTTGAAGCTTAGTTTTATTGATGTTCAAATGGTGCTTTTCAAACCTCAACTGAACGGGCTGCTGAACTTGGTTGGCTTACACTACTGCACAAATTTGCTTGAAATCCCTGTACGTCTGCTGCTTTTTACCATTTTTGTTCAATCATTTGTAGGTTTATAATATATTTTGGTTGTGAACTTTTATACTTATTCCATTTTGACCCCCTTAAATCTTCAAAGGCTCTATTTTCGTCCTGAACTTTGAACAAAAATTCATTTTTAGTCTCAGCTATTGTTTCCTCTGTAGCCATTTGTTCAGAACTCCAAATATATTTTGGAAATTTGACACTGTCCTAATATACATAGTTTCAAACTGTTGTTTACATGGACATTTTCTTGTCAAATAAGTAAATTAAAGACTTCGATGTTGGGTTTTTGTTAGATACTTTGTAAAGCTTTAATCACTGATTCTTTATGCGAAGTTTAAGGACTAAAGCAAGATAGGACAAGATTAAAAGCTTAGAGTCTTAAGTACACAAGATTCTAGCTTATGATTTCATGGCCAAAGAACTTAGTGGTTAGAAAATGTTTTGAGTGATAAAACAAAATTCGTATACATTAAAGACTGTTTCGACATTCAAATTGTATAGGATCATTATTAGGATTCCAGCTTATTTTGCGTATCATGTATCTGAATTCTGAAGTTGTTGATTTGATTTCGATTCCTGGCAGGCCTATCGAGTCATGGAAGCACTTCAAAGATGCAAGATCTCAGAGAAACATATATGTGTGAAATGGTGGAAGCTAGGAAGATGGTTCTATGGCTTCCGCATGAGAGACGAACAACATACTCGTCGAGTCTCTCTGGCAGAACTGTTAACGGCAGAAGGGGAAGACGTTCTTGGGGTGCTTAGCCGAGGTCCTGTTCATGAGGTGCTCCGGGTTCAGGTTTCTGTAAGTGATCCCTTTGACAGTCACTGA

mRNA sequence

ATGGGGTTGCTCCATCTTCCACTTGATGTTGCACTGAAAATTGCTTCTTCTCTTCAGGCATCGGACATTTGTGCTTTGGGCTGTTGCTCGCGGTTATGTCGGGAAATTTTCGATTCCGATTGTTTGTGGGAGTCTCTTGCAAGAGAAAGATGGCCTTATATCTATGCTTCTTCATCTACTGGTTCTTCTTCGTCAACTCCTGCAAAATTCCCCATATCCATGGGATGGAAAAGCTTTTACATCCTGAGGCATATTGAGATATTGGGAAGAGCCCAAGCAGCAGTCAAGTTTATAGAACAATGCCCTCCTTCGACACCGATTGAGGGTGGAGACTATCTCAGGACAATACTCGGCTTGCGGGATTTGAAGCTTAGTTTTATTGATGTTCAAATGGTGCTTTTCAAACCTCAACTGAACGGGCTGCTGAACTTGGTTGGCTTACACTACTGCACAAATTTGCTTGAAATCCCTGCCTATCGAGTCATGGAAGCACTTCAAAGATGCAAGATCTCAGAGAAACATATATGTGTGAAATGGTGGAAGCTAGGAAGATGGTTCTATGGCTTCCGCATGAGAGACGAACAACATACTCGTCGAGTCTCTCTGGCAGAACTGTTAACGGCAGAAGGGGAAGACGTTCTTGGGGTGCTTAGCCGAGGTCCTGTTCATGAGGTGCTCCGGGTTCAGGTTTCTGTAAGTGATCCCTTTGACAGTCACTGA

Coding sequence (CDS)

ATGGGGTTGCTCCATCTTCCACTTGATGTTGCACTGAAAATTGCTTCTTCTCTTCAGGCATCGGACATTTGTGCTTTGGGCTGTTGCTCGCGGTTATGTCGGGAAATTTTCGATTCCGATTGTTTGTGGGAGTCTCTTGCAAGAGAAAGATGGCCTTATATCTATGCTTCTTCATCTACTGGTTCTTCTTCGTCAACTCCTGCAAAATTCCCCATATCCATGGGATGGAAAAGCTTTTACATCCTGAGGCATATTGAGATATTGGGAAGAGCCCAAGCAGCAGTCAAGTTTATAGAACAATGCCCTCCTTCGACACCGATTGAGGGTGGAGACTATCTCAGGACAATACTCGGCTTGCGGGATTTGAAGCTTAGTTTTATTGATGTTCAAATGGTGCTTTTCAAACCTCAACTGAACGGGCTGCTGAACTTGGTTGGCTTACACTACTGCACAAATTTGCTTGAAATCCCTGCCTATCGAGTCATGGAAGCACTTCAAAGATGCAAGATCTCAGAGAAACATATATGTGTGAAATGGTGGAAGCTAGGAAGATGGTTCTATGGCTTCCGCATGAGAGACGAACAACATACTCGTCGAGTCTCTCTGGCAGAACTGTTAACGGCAGAAGGGGAAGACGTTCTTGGGGTGCTTAGCCGAGGTCCTGTTCATGAGGTGCTCCGGGTTCAGGTTTCTGTAAGTGATCCCTTTGACAGTCACTGA

Protein sequence

MGLLHLPLDVALKIASSLQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSSTGSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLRDLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWWKLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH

Homology

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BLAST of Csor.00g252400 vs. NCBI nr
Match: KAG6597495.1 (hypothetical protein SDJN03_10675, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028954.1 hypothetical protein SDJN02_10137 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 489 bits (1259), Expect = 1.55e-174
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSST 60
           MGLLHLPLDVALKIASSLQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSST
Sbjct: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSST 60

Query: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR 120
           GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR
Sbjct: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR 120

Query: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW 180
           DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW
Sbjct: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW 180

Query: 181 KLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239
           KLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH
Sbjct: 181 KLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239

[Close]

BLAST of Csor.00g252400 vs. NCBI nr
Match: XP_023540636.1 (uncharacterized protein LOC111800940 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 488 bits (1256), Expect = 4.45e-174
Identity = 237/239 (99.16%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSST 60
           MGLLHLPLDVALKIASSLQASDICALGCCSRLCRE+FDSDCLWESLARERWPYIYASSST
Sbjct: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCRELFDSDCLWESLARERWPYIYASSST 60

Query: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR 120
           GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR
Sbjct: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR 120

Query: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW 180
           DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKH+CVKWW
Sbjct: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHVCVKWW 180

Query: 181 KLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239
           KLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH
Sbjct: 181 KLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239

[Close]

BLAST of Csor.00g252400 vs. NCBI nr
Match: XP_022950192.1 (uncharacterized protein LOC111453355 [Cucurbita moschata])

HSP 1 Score: 487 bits (1254), Expect = 8.98e-174
Identity = 237/239 (99.16%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSST 60
           MGLLHLPLDVALKIASSLQASDICALGCCSRLCRE+FDSDCLWESLARERWPYIYASSST
Sbjct: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCRELFDSDCLWESLARERWPYIYASSST 60

Query: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR 120
           GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR
Sbjct: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR 120

Query: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW 180
           DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW
Sbjct: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW 180

Query: 181 KLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239
           KLGRWFYGFRMRDEQHTRRVSLAEL+TAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH
Sbjct: 181 KLGRWFYGFRMRDEQHTRRVSLAELVTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239

[Close]

BLAST of Csor.00g252400 vs. NCBI nr
Match: XP_022973765.1 (uncharacterized protein LOC111472328 isoform X1 [Cucurbita maxima] >XP_022975461.1 uncharacterized protein LOC111474828 isoform X1 [Cucurbita maxima])

HSP 1 Score: 483 bits (1243), Expect = 4.27e-172
Identity = 234/239 (97.91%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSST 60
           MGLLHLPLDVALKIASSLQASDICALGCCSRLCRE+FDSDCLWESLARERWPYIYASSST
Sbjct: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCRELFDSDCLWESLARERWPYIYASSST 60

Query: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR 120
           GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPP TPIEGGDYLRTILGL+
Sbjct: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPLTPIEGGDYLRTILGLQ 120

Query: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW 180
           DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKH+CVKWW
Sbjct: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHVCVKWW 180

Query: 181 KLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239
           KLGRWFYGFRMRDEQHTRRVSLAEL+TAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH
Sbjct: 181 KLGRWFYGFRMRDEQHTRRVSLAELVTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239

[Close]

BLAST of Csor.00g252400 vs. NCBI nr
Match: XP_023540637.1 (uncharacterized protein LOC111800940 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 455 bits (1170), Expect = 3.11e-161
Identity = 218/222 (98.20%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 18  LQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSSTGSSSSTPAKFPISMGWK 77
           ++ASDICALGCCSRLCRE+FDSDCLWESLARERWPYIYASSSTGSSSSTPAKFPISMGWK
Sbjct: 1   MKASDICALGCCSRLCRELFDSDCLWESLARERWPYIYASSSTGSSSSTPAKFPISMGWK 60

Query: 78  SFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLRDLKLSFIDVQMVLFKPQ 137
           SFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLRDLKLSFIDVQMVLFKPQ
Sbjct: 61  SFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLRDLKLSFIDVQMVLFKPQ 120

Query: 138 LNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWWKLGRWFYGFRMRDEQHT 197
           LNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKH+CVKWWKLGRWFYGFRMRDEQHT
Sbjct: 121 LNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHVCVKWWKLGRWFYGFRMRDEQHT 180

Query: 198 RRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239
           RRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH
Sbjct: 181 RRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 222

[Close]

BLAST of Csor.00g252400 vs. ExPASy TrEMBL
Match: A0A6J1GE44 (uncharacterized protein LOC111453355 OS=Cucurbita moschata OX=3662 GN=LOC111453355 PE=4 SV=1)

HSP 1 Score: 487 bits (1254), Expect = 4.35e-174
Identity = 237/239 (99.16%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSST 60
           MGLLHLPLDVALKIASSLQASDICALGCCSRLCRE+FDSDCLWESLARERWPYIYASSST
Sbjct: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCRELFDSDCLWESLARERWPYIYASSST 60

Query: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR 120
           GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR
Sbjct: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR 120

Query: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW 180
           DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW
Sbjct: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW 180

Query: 181 KLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239
           KLGRWFYGFRMRDEQHTRRVSLAEL+TAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH
Sbjct: 181 KLGRWFYGFRMRDEQHTRRVSLAELVTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239

[Close]

BLAST of Csor.00g252400 vs. ExPASy TrEMBL
Match: A0A6J1IEA8 (uncharacterized protein LOC111472328 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474828 PE=4 SV=1)

HSP 1 Score: 483 bits (1243), Expect = 2.07e-172
Identity = 234/239 (97.91%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSST 60
           MGLLHLPLDVALKIASSLQASDICALGCCSRLCRE+FDSDCLWESLARERWPYIYASSST
Sbjct: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCRELFDSDCLWESLARERWPYIYASSST 60

Query: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR 120
           GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPP TPIEGGDYLRTILGL+
Sbjct: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPLTPIEGGDYLRTILGLQ 120

Query: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW 180
           DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKH+CVKWW
Sbjct: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHVCVKWW 180

Query: 181 KLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239
           KLGRWFYGFRMRDEQHTRRVSLAEL+TAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH
Sbjct: 181 KLGRWFYGFRMRDEQHTRRVSLAELVTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239

[Close]

BLAST of Csor.00g252400 vs. ExPASy TrEMBL
Match: A0A6J1ID51 (uncharacterized protein LOC111472328 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474828 PE=4 SV=1)

HSP 1 Score: 450 bits (1157), Expect = 1.44e-159
Identity = 215/222 (96.85%), Postives = 221/222 (99.55%), Query Frame = 0


Query: 18  LQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSSTGSSSSTPAKFPISMGWK 77
           ++ASDICALGCCSRLCRE+FDSDCLWESLARERWPYIYASSSTGSSSSTPAKFPISMGWK
Sbjct: 1   MKASDICALGCCSRLCRELFDSDCLWESLARERWPYIYASSSTGSSSSTPAKFPISMGWK 60

Query: 78  SFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLRDLKLSFIDVQMVLFKPQ 137
           SFYILRHIEILGRAQAAVKFIEQCPP TPIEGGDYLRTILGL+DLKLSFIDVQMVLFKPQ
Sbjct: 61  SFYILRHIEILGRAQAAVKFIEQCPPLTPIEGGDYLRTILGLQDLKLSFIDVQMVLFKPQ 120

Query: 138 LNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWWKLGRWFYGFRMRDEQHT 197
           LNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKH+CVKWWKLGRWFYGFRMRDEQHT
Sbjct: 121 LNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHVCVKWWKLGRWFYGFRMRDEQHT 180

Query: 198 RRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239
           RRVSLAEL+TAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH
Sbjct: 181 RRVSLAELVTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 222

[Close]

BLAST of Csor.00g252400 vs. ExPASy TrEMBL
Match: A0A6J1C8B1 (uncharacterized protein LOC111009254 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009254 PE=4 SV=1)

HSP 1 Score: 390 bits (1002), Expect = 1.43e-135
Identity = 192/239 (80.33%), Postives = 208/239 (87.03%), Query Frame = 0


Query: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSST 60
           MG LHLP+DVALKIASSLQASDICAL CCSRLCREI D DCLWESLARERWPYI ASSS+
Sbjct: 1   MGFLHLPIDVALKIASSLQASDICALACCSRLCREICDLDCLWESLARERWPYINASSSS 60

Query: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR 120
           GSSSST AK PIS GW++FYI +HIEI G+A+AAVKFIEQC PSTPIE GDY R I GL 
Sbjct: 61  GSSSSTLAKPPISTGWRNFYIRKHIEISGKAKAAVKFIEQCSPSTPIEAGDYHRAIAGLW 120

Query: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW 180
           DLKLSF+DVQMVLFKPQLN LLNLVGLHYC N L++PA +VMEAL   KISEKH+ VKWW
Sbjct: 121 DLKLSFVDVQMVLFKPQLNELLNLVGLHYCKNWLQVPANQVMEALLSHKISEKHVYVKWW 180

Query: 181 KLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239
           KLGRWFYGFRMRDE  TRRVSLAEL+ AEGED+LGVLSRG VHEVLRVQ++  DPF SH
Sbjct: 181 KLGRWFYGFRMRDEHQTRRVSLAELIAAEGEDILGVLSRGAVHEVLRVQIAAGDPFCSH 239

[Close]

BLAST of Csor.00g252400 vs. ExPASy TrEMBL
Match: A0A5A7U795 (F-box-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00440 PE=4 SV=1)

HSP 1 Score: 388 bits (997), Expect = 6.68e-135
Identity = 191/239 (79.92%), Postives = 206/239 (86.19%), Query Frame = 0


Query: 1   MGLLHLPLDVALKIASSLQASDICALGCCSRLCREIFDSDCLWESLARERWPYIYASSST 60
           MG  HLP D ALKIASSLQ S+IC+LGCCSR CR++ DSD LWESLARERWPYI      
Sbjct: 1   MGFDHLPTDTALKIASSLQVSEICSLGCCSRFCRQLCDSDYLWESLARERWPYI-----N 60

Query: 61  GSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLR 120
           GSSSST A+ PISMGWKSFYI RHIEILGRAQAAVKF+EQC PSTPIEGGDYLRTI GL 
Sbjct: 61  GSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFVEQCSPSTPIEGGDYLRTIGGLW 120

Query: 121 DLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWW 180
           DLKLSF+D QMVLFKPQLN LLNLVGLHYC   L++PA +++EALQRCKI+E+HICVKWW
Sbjct: 121 DLKLSFVDAQMVLFKPQLNELLNLVGLHYCRIWLQVPANQILEALQRCKIAERHICVKWW 180

Query: 181 KLGRWFYGFRMRDEQHTRRVSLAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSDPFDSH 239
           KLGRWFYGFRMRDEQ TRRVSLAEL+T EGEDVLGVLSRG VHEVLRVQVSV D F  H
Sbjct: 181 KLGRWFYGFRMRDEQQTRRVSLAELMTEEGEDVLGVLSRGAVHEVLRVQVSVGDSFAGH 234

[Close]

BLAST of Csor.00g252400 vs. TAIR 10
Match: AT4G15563.1 (unknown protein; Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-31
Identity = 65/153 (42.48%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 82  LRHIEILGRAQAAVKFIEQCPPSTPIEGGDYLRTILGLRDLKLSFIDVQMVLFKPQLNGL 141
           ++H E+  RA   +K++ + P +  +E G YL  +  +  ++  F DV++  FKP L+ L
Sbjct: 1   MQHKEMASRASEVIKYVTKSPATLSLEAGIYLHAVETMSSMRFGFQDVELFFFKPNLSVL 60

Query: 142 LNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHICVKWWKLGRWFYGFRMRDEQHTRRVS 201
           LNL+GL YC   L+    +V++ L++C ISE+ + VKW  LGRW  G RMRD+  +R+VS
Sbjct: 61  LNLIGLIYCIQHLKPRREQVVDVLRQCGISEQLVWVKWLTLGRWSGGSRMRDDIVSRQVS 120

Query: 202 LAELLTAEGEDVLGVLSRGPVHEVLRVQVSVSD 235
           L +++T + E VL VL RG VHEVLRV +S  D
Sbjct: 121 LVDVVTGKEETVLRVLQRGVVHEVLRVCISTVD 153

The following BLAST results are available for this feature:

BLAST of Csor.00g252400 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g252400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597495.1	1.55e-174	100.00	hypothetical protein SDJN03_10675, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023540636.1	4.45e-174	99.16	uncharacterized protein LOC111800940 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022950192.1	8.98e-174	99.16	uncharacterized protein LOC111453355 [Cucurbita moschata]	[more]
XP_022973765.1	4.27e-172	97.91	uncharacterized protein LOC111472328 isoform X1 [Cucurbita maxima] >XP_022975461...	[more]
XP_023540637.1	3.11e-161	98.20	uncharacterized protein LOC111800940 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g252400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GE44	4.35e-174	99.16	uncharacterized protein LOC111453355 OS=Cucurbita moschata OX=3662 GN=LOC1114533...	[more]
A0A6J1IEA8	2.07e-172	97.91	uncharacterized protein LOC111472328 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ID51	1.44e-159	96.85	uncharacterized protein LOC111472328 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1C8B1	1.43e-135	80.33	uncharacterized protein LOC111009254 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7U795	6.68e-135	79.92	F-box-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Csor.00g252400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15563.1	2.0e-31	42.48	unknown protein; Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 6..46 e-value: 2.4E-4 score: 30.4
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 3..44 e-value: 2.7E-7 score: 30.3
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 1..46 score: 10.053852
None	No IPR available	GENE3D	1.20.1280.50		coord: 2..87 e-value: 3.9E-8 score: 35.1
None	No IPR available	PANTHER	PTHR16008:SF4	F-BOX ONLY PROTEIN 4	coord: 2..236
IPR039588	F-box only protein 4	PANTHER	PTHR16008	F-BOX ONLY PROTEIN 4	coord: 2..236
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 3..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g252400.m01	Csor.00g252400.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding