Csor.00g251800 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g251800
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Pectin lyase-like superfamily protein
Location	Csor_Chr06: 10524644 .. 10527077 (+)
RNA-Seq Expression	Csor.00g251800
Synteny	Csor.00g251800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATGCTAGTAAGTACGTTTCTTTTATCTGGGTTTTCTTTGTTTTTTTGTTTTACGAATCATTTTATGTCGATTTCTGAAGAACCCCTTTTGTTCTTACCCTTGTTTTTCAATGTCTTTCACCATCTGTTTCATGTCTGTGTTCTTTACAGATGGTCCAGAAACCCTTTTTGACTTTTCCTGATTTGTATCCCTTTCCTTGATGATGTTGATTTTCTCGCAGGTTTTGATTTCCAGATTTGATGTTCTTCTGAATTCCTCTTTGATCTGTTCTTCATCTTGTCGGATTAGTTCTTTTCTTGCGATTTTGGGCTATTTGTTATCTGGGTTTCCACCATTGTTGTCTTTTTAAGCTTCTTTTGTTTCATTCTTTAGGTGGCATTGCTGCTGTTGCTACAATTGAGCAATGCTGCGAAGATTATTGGTGATGAGCTCTCCGGACAGTGCAATTCTAAGCCCATATTAGATCCAAGGCCACACAGTGTGTCTATCTTGGAGTTTGGGGCTGTTGGTGATGGCAAAACTCTCAACACCATTGCCTTCCAAAACGCCATTTTCTATCTCAAATCCTTCGCTGATAAGGGTGGAGCTCAGCTTTATGTTCCACCGGGAAAATGGCTCACTGGAAGCTTTAATCTCACTAGCCACCTTACCCTTTTTCTGGAAAAAGGTGCTACCATTCTTGCCTCTCAGGTATGTTCTTATTCTTGGATGAACATAGTGTTTGATTTTAGGCATTTGTTTTGTGATTATCGATCGTATCTTAAACACAGGACCCGTCCCATTGGGAACTTGTCAATCCGTTACCTTCGTATGGTAGAGGTGTTGAAGTTCCAGGGAAACGATACCGGAGCTTGATAAATGGTTACAATTTACACGATGTTGTAATAACAGGTTTGTTATTTGTTCGACACGCTTGATTTAGAATCTAGTTTGTGCGTATGCGATTCACTCGTATGAACATGTGTTATTGTCTTGATTTTCGATGTGCTAGGTGATGATGGTGTCATTGATGGTCAGGGTTTGGTTTGGTGGGATTGGTTCACTTCTCATTCCTTAAACTATAGCCGTCCTCACCTCGTGGAATTTGAGGATTCGGAATATGTAGTCGTTTCGAACCTTAGTTTCTTGAATACTCCTGCTTATAATATCCATCCAGTTTACTGCAGGTATGTCGTAACGTAGCTACTAGAATTCAGTTTCTTCTGCCTTTGTTTGTTCGGTTCACGTTGTTCGTATTTGTGAGCGAATCTGTATTGAAACATAAGTGTTTCATGTGCAGTAATGTCTATGTTTTCAACATCTCTGTCTCTGCACCTTCTGAATCTCCCTACACTGTTGGAATAGTCCCAGGTTTGAAATGCTTTCTCAGCTTCCTCATTGTCATTTGTTCGACTATTAGTGTGGGCTCCTCTGGCCGAATGGCTCGAGCACCATTGAAGAATATCTCCTTTAATCGATCTCTCGCTCTCTCTCTGTCTCTCACGCACACACACCACGTAGTGCTTAGTAGAAGATGCCATCGAGAAAGATATCAAGGGCAGTTTGCTGAATGTCGTTAGCTCGTTTAAGGAAAACAAGTTCTTATGATTCGGGTTTGAGTCTAGAAAAGATGACTCGTTAGACAGCATCATGATTAGAATGATTTATTAGAATGATGATCAAACCCGGACTTAAAATCTAGAAGTACGATGCGATTCATTCATTTTTGCTCGTAATTAATAAGGCGACGACGCCTTTTCTAAATAAAATTTGATTGGTGCTTTCAGATTCTTCTGATCATGTATGCATAGAGGGCTGCAACATTGCCACGGGATATGACGCCATCGTCTTGAAGAGCGGCTGGGATCAGTATGGTATAGCCTATGGTAGACCATCTAAAAACATACACATCAGAAACGTCCACCTTCAGTCGTCTTCAGGTTCGTCCATTGCCTTTGGTAGCGAGATGTCTGGTGGGATATCTAATGTTCTTGTCGAGCACGTGCACTTGTACAACTCGTCTACTGGCATTGAATTCAGAACTACCAAGGGAAGAGGAGGTTACATTAAAGGAATAGTTATATCAGACGTTGAAATGGAAAACATATCCACGGGATTCAGTGCCTCGGGTCATTTCGGGTCACATCCAGACGACGAGTTCGATCCTAACGCACTTCCAATCGTGCAGGACATAACGTTGCAGAATGTTCGAGGCACAAACATTAAAATTGCTGGAAACTTCACTGGGCTAAAGGAATCTCCCTTCACTTCAATCTATTTATCCAACATTACCTTTTCAATGAATTCATCTTCTTCCACTTCTTGGATCTGTTCAGATGTTTCTGGGTACTCGGAATCCGTTATCCCGGCGCCCTGTTCTGACCTCGATACTCGATATTCAATTTCTTCATTAGCAGCGAATTCAGCTGGAAAAGCTGCTGTTTTATGA

mRNA sequence

ATGAGGATGCTAGTGGCATTGCTGCTGTTGCTACAATTGAGCAATGCTGCGAAGATTATTGGTGATGAGCTCTCCGGACAGTGCAATTCTAAGCCCATATTAGATCCAAGGCCACACAGTGACCCGTCCCATTGGGAACTTGTCAATCCGTTACCTTCGTATGGTAGAGGTGTTGAAGTTCCAGGGAAACGATACCGGAGCTTGATAAATGGTTACAATTTACACGATGTTGTAATAACAGGTGATGATGGTGTCATTGATGGTCAGGGTTTGGTTTGGTGGGATTGGTTCACTTCTCATTCCTTAAACTATAGCCGTCCTCACCTCGTGGAATTTGAGGATTCGGAATATGTAGTCGTTTCGAACCTTAGTTTCTTGAATACTCCTGCTTATAATATCCATCCAGTTTACTGCAGTAATGTCTATGTTTTCAACATCTCTGTCTCTGCACCTTCTGAATCTCCCTACACTGTTGGAATAGTCCCAGATGTTTCTGGGTACTCGGAATCCGTTATCCCGGCGCCCTGTTCTGACCTCGATACTCGATATTCAATTTCTTCATTAGCAGCGAATTCAGCTGGAAAAGCTGCTGTTTTATGA

Coding sequence (CDS)

ATGAGGATGCTAGTGGCATTGCTGCTGTTGCTACAATTGAGCAATGCTGCGAAGATTATTGGTGATGAGCTCTCCGGACAGTGCAATTCTAAGCCCATATTAGATCCAAGGCCACACAGTGACCCGTCCCATTGGGAACTTGTCAATCCGTTACCTTCGTATGGTAGAGGTGTTGAAGTTCCAGGGAAACGATACCGGAGCTTGATAAATGGTTACAATTTACACGATGTTGTAATAACAGGTGATGATGGTGTCATTGATGGTCAGGGTTTGGTTTGGTGGGATTGGTTCACTTCTCATTCCTTAAACTATAGCCGTCCTCACCTCGTGGAATTTGAGGATTCGGAATATGTAGTCGTTTCGAACCTTAGTTTCTTGAATACTCCTGCTTATAATATCCATCCAGTTTACTGCAGTAATGTCTATGTTTTCAACATCTCTGTCTCTGCACCTTCTGAATCTCCCTACACTGTTGGAATAGTCCCAGATGTTTCTGGGTACTCGGAATCCGTTATCCCGGCGCCCTGTTCTGACCTCGATACTCGATATTCAATTTCTTCATTAGCAGCGAATTCAGCTGGAAAAGCTGCTGTTTTATGA

Protein sequence

MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHSDPSHWELVNPLPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFEDSEYVVVSNLSFLNTPAYNIHPVYCSNVYVFNISVSAPSESPYTVGIVPDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL

Homology

[Close]

BLAST of Csor.00g251800 vs. ExPASy Swiss-Prot
Match: A7PZL3 (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.8e-31
Identity = 63/123 (51.22%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 41  DPSHWELVNPLPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSH 100
           D S W ++ PLPSYGRG +    RY SLI G NL DV+ITGD+G IDGQG +WW  F   
Sbjct: 133 DISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGG 192

Query: 101 SLNYSRPHLVEFEDSEYVVVSNLSFLNTPAYNIHPVYCSNVYVFNISVSAPSESPYTVGI 160
            L Y+RP+L+E   S  + +SNL+ LN+P++N+HPVY  N+ +  I++ AP  SP T GI
Sbjct: 193 KLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGI 252

Query: 161 VPD 164
            PD
Sbjct: 253 NPD 255

[Close]

BLAST of Csor.00g251800 vs. ExPASy Swiss-Prot
Match: Q8RY29 (Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-07
Identity = 33/85 (38.82%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 81  GDDGVIDGQGLVWWDWFTSHSLNYSR-----PHLVEFEDSEYVVVSNLSFLNTPAYNIHP 140
           GD GV+DG G  WW    S   N ++     P  + F +S+ ++V NL   N     I  
Sbjct: 163 GDTGVVDGNGETWWQ--NSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISI 222

Query: 141 VYCSNVYVFNISVSAPSESPYTVGI 161
             CSNV V N+ V+AP++SP T GI
Sbjct: 223 EKCSNVQVSNVVVTAPADSPNTDGI 245

[Close]

BLAST of Csor.00g251800 vs. ExPASy Swiss-Prot
Match: P43212 (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 84  GVIDGQGLVWW----DWFTSHSL--NYSRPHLVEFEDSEYVVVSNLSFLNTPAYNIHPVY 143
           GVIDGQG  WW     W     +  +  RP  ++F+ S  +++  L  +N+P +++    
Sbjct: 154 GVIDGQGKQWWAGQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGN 213

Query: 144 CSNVYVFNISVSAPSESPYTVGI 161
           C  V +  IS++AP +SP T GI
Sbjct: 214 CEGVKIIGISITAPRDSPNTDGI 236

[Close]

BLAST of Csor.00g251800 vs. ExPASy Swiss-Prot
Match: Q9LW07 (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.3e-06
Identity = 35/100 (35.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 73  NLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFEDSEYVVVSNLSFLNTPAYN 132
           ++  +VI G DG I+GQG  WW+         SRP  ++F     + +S L+ L++P  +
Sbjct: 111 DIEGLVIEG-DGEINGQGSSWWEH------KGSRPTALKFRSCNNLRLSGLTHLDSPMAH 170

Query: 133 IHPVYCSNVYVFNISVSAPSESPYTVGIVPDVSGYSESVI 173
           IH   C+ V + ++ ++AP  SP T GI  DV   S  VI
Sbjct: 171 IHISECNYVTISSLRINAPESSPNTDGI--DVGASSNVVI 201

[Close]

BLAST of Csor.00g251800 vs. NCBI nr
Match: KAG6597555.1 (putative polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 400 bits (1028), Expect = 1.20e-140
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHSDPSHWELVNPLPSYGRGVEV 60
           MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHSDPSHWELVNPLPSYGRGVEV
Sbjct: 1   MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHSDPSHWELVNPLPSYGRGVEV 60

Query: 61  PGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFEDSEYVVV 120
           PGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFEDSEYVVV
Sbjct: 61  PGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFEDSEYVVV 120

Query: 121 SNLSFLNTPAYNIHPVYCSNVYVFNISVSAPSESPYTVGIVPDVSGYSESVIPAPCSDLD 180
           SNLSFLNTPAYNIHPVYCSNVYVFNISVSAPSESPYTVGIVPDVSGYSESVIPAPCSDLD
Sbjct: 121 SNLSFLNTPAYNIHPVYCSNVYVFNISVSAPSESPYTVGIVPDVSGYSESVIPAPCSDLD 180

Query: 181 TRYSISSLAANSAGKAAVL 199
           TRYSISSLAANSAGKAAVL
Sbjct: 181 TRYSISSLAANSAGKAAVL 199

[Close]

BLAST of Csor.00g251800 vs. NCBI nr
Match: XP_023539520.1 (probable polygalacturonase isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306 bits (784), Expect = 7.10e-100
Identity = 164/237 (69.20%), Postives = 165/237 (69.62%), Query Frame = 0


Query: 1   MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS-------------------- 60
           MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS                    
Sbjct: 1   MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHSVSILEFGAVGDGKTLNTIAF 60

Query: 61  --------------------------------------------------DPSHWELVNP 120
                                                             DPSHWELVNP
Sbjct: 61  QNAIFYLKSFADKGGAQLYVPPGKWLTGSINLTSHLTLFLEKGATILGSQDPSHWELVNP 120

Query: 121 LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV 167
           LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV
Sbjct: 121 LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV 180

[Close]

BLAST of Csor.00g251800 vs. NCBI nr
Match: XP_022939749.1 (probable polygalacturonase isoform X2 [Cucurbita moschata])

HSP 1 Score: 306 bits (784), Expect = 7.10e-100
Identity = 164/237 (69.20%), Postives = 165/237 (69.62%), Query Frame = 0


Query: 1   MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS-------------------- 60
           MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS                    
Sbjct: 1   MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHSVSILEFGAVGDGKTLNTIAF 60

Query: 61  --------------------------------------------------DPSHWELVNP 120
                                                             DPSHWELVNP
Sbjct: 61  QNAIFYLKSFADKGGAQLYVPPGKWLTGSINLTSHLTLFLEKGATILASQDPSHWELVNP 120

Query: 121 LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV 167
           LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV
Sbjct: 121 LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV 180

[Close]

BLAST of Csor.00g251800 vs. NCBI nr
Match: XP_022972277.1 (probable polygalacturonase isoform X2 [Cucurbita maxima])

HSP 1 Score: 306 bits (784), Expect = 8.00e-100
Identity = 164/237 (69.20%), Postives = 165/237 (69.62%), Query Frame = 0


Query: 1   MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS-------------------- 60
           MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS                    
Sbjct: 1   MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHSVSILEFGAVGDGKTLNTIAF 60

Query: 61  --------------------------------------------------DPSHWELVNP 120
                                                             DPSHWELVNP
Sbjct: 61  QNAIFYLKSFADKGGAQLYVPPGKWLTGSINLTSHLTLFLEKGATILGSQDPSHWELVNP 120

Query: 121 LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV 167
           LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV
Sbjct: 121 LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV 180

[Close]

BLAST of Csor.00g251800 vs. NCBI nr
Match: XP_022939716.1 (probable polygalacturonase isoform X1 [Cucurbita moschata] >XP_022939725.1 probable polygalacturonase isoform X1 [Cucurbita moschata] >XP_022939734.1 probable polygalacturonase isoform X1 [Cucurbita moschata] >XP_022939742.1 probable polygalacturonase isoform X1 [Cucurbita moschata])

HSP 1 Score: 300 bits (769), Expect = 1.43e-97
Identity = 160/233 (68.67%), Postives = 161/233 (69.10%), Query Frame = 0


Query: 5   VALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS------------------------ 64
           VALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS                        
Sbjct: 8   VALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHSVSILEFGAVGDGKTLNTIAFQNAI 67

Query: 65  ----------------------------------------------DPSHWELVNPLPSY 124
                                                         DPSHWELVNPLPSY
Sbjct: 68  FYLKSFADKGGAQLYVPPGKWLTGSINLTSHLTLFLEKGATILASQDPSHWELVNPLPSY 127

Query: 125 GRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFED 167
           GRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFED
Sbjct: 128 GRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFED 187

[Close]

BLAST of Csor.00g251800 vs. ExPASy TrEMBL
Match: A0A6J1FI43 (probable polygalacturonase isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445517 PE=3 SV=1)

HSP 1 Score: 306 bits (784), Expect = 3.44e-100
Identity = 164/237 (69.20%), Postives = 165/237 (69.62%), Query Frame = 0


Query: 1   MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS-------------------- 60
           MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS                    
Sbjct: 1   MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHSVSILEFGAVGDGKTLNTIAF 60

Query: 61  --------------------------------------------------DPSHWELVNP 120
                                                             DPSHWELVNP
Sbjct: 61  QNAIFYLKSFADKGGAQLYVPPGKWLTGSINLTSHLTLFLEKGATILASQDPSHWELVNP 120

Query: 121 LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV 167
           LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV
Sbjct: 121 LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV 180

[Close]

BLAST of Csor.00g251800 vs. ExPASy TrEMBL
Match: A0A6J1I4D7 (probable polygalacturonase isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470858 PE=3 SV=1)

HSP 1 Score: 306 bits (784), Expect = 3.87e-100
Identity = 164/237 (69.20%), Postives = 165/237 (69.62%), Query Frame = 0


Query: 1   MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS-------------------- 60
           MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS                    
Sbjct: 1   MRMLVALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHSVSILEFGAVGDGKTLNTIAF 60

Query: 61  --------------------------------------------------DPSHWELVNP 120
                                                             DPSHWELVNP
Sbjct: 61  QNAIFYLKSFADKGGAQLYVPPGKWLTGSINLTSHLTLFLEKGATILGSQDPSHWELVNP 120

Query: 121 LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV 167
           LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV
Sbjct: 121 LPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLV 180

[Close]

BLAST of Csor.00g251800 vs. ExPASy TrEMBL
Match: A0A6J1FGQ0 (probable polygalacturonase isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445517 PE=3 SV=1)

HSP 1 Score: 300 bits (769), Expect = 6.93e-98
Identity = 160/233 (68.67%), Postives = 161/233 (69.10%), Query Frame = 0


Query: 5   VALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS------------------------ 64
           VALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS                        
Sbjct: 8   VALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHSVSILEFGAVGDGKTLNTIAFQNAI 67

Query: 65  ----------------------------------------------DPSHWELVNPLPSY 124
                                                         DPSHWELVNPLPSY
Sbjct: 68  FYLKSFADKGGAQLYVPPGKWLTGSINLTSHLTLFLEKGATILASQDPSHWELVNPLPSY 127

Query: 125 GRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFED 167
           GRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFED
Sbjct: 128 GRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFED 187

[Close]

BLAST of Csor.00g251800 vs. ExPASy TrEMBL
Match: A0A6J1I844 (probable polygalacturonase isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470858 PE=3 SV=1)

HSP 1 Score: 300 bits (769), Expect = 7.80e-98
Identity = 160/233 (68.67%), Postives = 161/233 (69.10%), Query Frame = 0


Query: 5   VALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS------------------------ 64
           VALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS                        
Sbjct: 8   VALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHSVSILEFGAVGDGKTLNTIAFQNAI 67

Query: 65  ----------------------------------------------DPSHWELVNPLPSY 124
                                                         DPSHWELVNPLPSY
Sbjct: 68  FYLKSFADKGGAQLYVPPGKWLTGSINLTSHLTLFLEKGATILGSQDPSHWELVNPLPSY 127

Query: 125 GRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFED 167
           GRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFED
Sbjct: 128 GRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHLVEFED 187

[Close]

BLAST of Csor.00g251800 vs. ExPASy TrEMBL
Match: A0A0A0LAN4 (Pectate_lyase_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G165090 PE=3 SV=1)

HSP 1 Score: 282 bits (721), Expect = 1.28e-90
Identity = 152/238 (63.87%), Postives = 161/238 (67.65%), Query Frame = 0


Query: 1   MRML-VALLLLLQLSNAAKIIGDELSGQCNSKPILDPRPHS------------------- 60
           MRML VALLL LQLSNAAKIIG+EL GQC+SKP LDPRPHS                   
Sbjct: 1   MRMLLVALLLFLQLSNAAKIIGEELVGQCDSKPTLDPRPHSVSILEFGAVGDGKTLNTIA 60

Query: 61  ---------------------------------------------------DPSHWELVN 120
                                                              DPSHWELVN
Sbjct: 61  FQNAIFYLKSFADKGGAQLYVPPGKWLTGSINLTSHLTLFLEKGAVILGSQDPSHWELVN 120

Query: 121 PLPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSHSLNYSRPHL 167
           PLPSYGRG+EVPGKRYRSLINGYNL DVVITGDDGVIDGQGLVWW+WF+SHSLNYSRPHL
Sbjct: 121 PLPSYGRGIEVPGKRYRSLINGYNLQDVVITGDDGVIDGQGLVWWNWFSSHSLNYSRPHL 180

[Close]

BLAST of Csor.00g251800 vs. TAIR 10
Match: AT3G06770.3 (Pectin lyase-like superfamily protein )

HSP 1 Score: 198.0 bits (502), Expect = 7.3e-51
Identity = 87/127 (68.50%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 41  DPSHWELVNPLPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSH 100
           DPSHWE+V+PLPSYGRG+++PGKRY+SLING  LHDVV+TGD+G IDGQGLVWWD FTSH
Sbjct: 44  DPSHWEVVDPLPSYGRGIDLPGKRYKSLINGNKLHDVVVTGDNGTIDGQGLVWWDRFTSH 103

Query: 101 SLNYSRPHLVEFEDSEYVVVSNLSFLNTPAYNIHPVYCSNVYVFNISVSAPSESPYTVGI 160
           SL Y+RPHL+EF  SE V+VSNL+FLN PAY+I+ +Y S+VY+  I   +  +SPYT+GI
Sbjct: 104 SLKYNRPHLIEFLSSENVIVSNLTFLNAPAYSIYSIYSSHVYIHKILAHSSPKSPYTIGI 163

Query: 161 VPDVSGY 168
           VPD S Y
Sbjct: 164 VPDSSDY 170

[Close]

BLAST of Csor.00g251800 vs. TAIR 10
Match: AT3G06770.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 198.0 bits (502), Expect = 7.3e-51
Identity = 87/127 (68.50%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 41  DPSHWELVNPLPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSH 100
           DPSHWE+V+PLPSYGRG+++PGKRY+SLING  LHDVV+TGD+G IDGQGLVWWD FTSH
Sbjct: 44  DPSHWEVVDPLPSYGRGIDLPGKRYKSLINGNKLHDVVVTGDNGTIDGQGLVWWDRFTSH 103

Query: 101 SLNYSRPHLVEFEDSEYVVVSNLSFLNTPAYNIHPVYCSNVYVFNISVSAPSESPYTVGI 160
           SL Y+RPHL+EF  SE V+VSNL+FLN PAY+I+ +Y S+VY+  I   +  +SPYT+GI
Sbjct: 104 SLKYNRPHLIEFLSSENVIVSNLTFLNAPAYSIYSIYSSHVYIHKILAHSSPKSPYTIGI 163

Query: 161 VPDVSGY 168
           VPD S Y
Sbjct: 164 VPDSSDY 170

[Close]

BLAST of Csor.00g251800 vs. TAIR 10
Match: AT3G06770.2 (Pectin lyase-like superfamily protein )

HSP 1 Score: 198.0 bits (502), Expect = 7.3e-51
Identity = 87/127 (68.50%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 41  DPSHWELVNPLPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSH 100
           DPSHWE+V+PLPSYGRG+++PGKRY+SLING  LHDVV+TGD+G IDGQGLVWWD FTSH
Sbjct: 113 DPSHWEVVDPLPSYGRGIDLPGKRYKSLINGNKLHDVVVTGDNGTIDGQGLVWWDRFTSH 172

Query: 101 SLNYSRPHLVEFEDSEYVVVSNLSFLNTPAYNIHPVYCSNVYVFNISVSAPSESPYTVGI 160
           SL Y+RPHL+EF  SE V+VSNL+FLN PAY+I+ +Y S+VY+  I   +  +SPYT+GI
Sbjct: 173 SLKYNRPHLIEFLSSENVIVSNLTFLNAPAYSIYSIYSSHVYIHKILAHSSPKSPYTIGI 232

Query: 161 VPDVSGY 168
           VPD S Y
Sbjct: 233 VPDSSDY 239

[Close]

BLAST of Csor.00g251800 vs. TAIR 10
Match: AT5G49215.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-49
Identity = 85/125 (68.00%), Postives = 102/125 (81.60%), Query Frame = 0


Query: 41  DPSHWELVNPLPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSH 100
           DPSHW++ + LPSYGRG+++PGKRY SLING  LHDVV+TGD+G IDGQGLVWWD F SH
Sbjct: 113 DPSHWQVTDALPSYGRGIDLPGKRYMSLINGDMLHDVVVTGDNGTIDGQGLVWWDRFNSH 172

Query: 101 SLNYSRPHLVEFEDSEYVVVSNLSFLNTPAYNIHPVYCSNVYVFNISVSAPSESPYTVGI 160
           SL YSRPHLVEF  +E V+VSNL+FLN PAY IH VYC N+Y+  ++ +   ESPYT+GI
Sbjct: 173 SLEYSRPHLVEFVSAENVIVSNLTFLNAPAYTIHSVYCRNLYIHRVTANTCPESPYTIGI 232

Query: 161 VPDVS 166
           VPD S
Sbjct: 233 VPDSS 237

[Close]

BLAST of Csor.00g251800 vs. TAIR 10
Match: AT5G49215.2 (Pectin lyase-like superfamily protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-49
Identity = 85/125 (68.00%), Postives = 102/125 (81.60%), Query Frame = 0


Query: 41  DPSHWELVNPLPSYGRGVEVPGKRYRSLINGYNLHDVVITGDDGVIDGQGLVWWDWFTSH 100
           DPSHW++ + LPSYGRG+++PGKRY SLING  LHDVV+TGD+G IDGQGLVWWD F SH
Sbjct: 111 DPSHWQVTDALPSYGRGIDLPGKRYMSLINGDMLHDVVVTGDNGTIDGQGLVWWDRFNSH 170

Query: 101 SLNYSRPHLVEFEDSEYVVVSNLSFLNTPAYNIHPVYCSNVYVFNISVSAPSESPYTVGI 160
           SL YSRPHLVEF  +E V+VSNL+FLN PAY IH VYC N+Y+  ++ +   ESPYT+GI
Sbjct: 171 SLEYSRPHLVEFVSAENVIVSNLTFLNAPAYTIHSVYCRNLYIHRVTANTCPESPYTIGI 230

Query: 161 VPDVS 166
           VPD S
Sbjct: 231 VPDSS 235

The following BLAST results are available for this feature:

BLAST of Csor.00g251800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7PZL3	4.8e-31	51.22	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 ...	[more]
Q8RY29	6.3e-07	38.82	Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2	[more]
P43212	1.1e-06	33.73	Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1	[more]
Q9LW07	5.3e-06	35.00	Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g1572...	[more]

BLAST of Csor.00g251800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597555.1	1.20e-140	100.00	putative polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023539520.1	7.10e-100	69.20	probable polygalacturonase isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022939749.1	7.10e-100	69.20	probable polygalacturonase isoform X2 [Cucurbita moschata]	[more]
XP_022972277.1	8.00e-100	69.20	probable polygalacturonase isoform X2 [Cucurbita maxima]	[more]
XP_022939716.1	1.43e-97	68.67	probable polygalacturonase isoform X1 [Cucurbita moschata] >XP_022939725.1 proba...	[more]

BLAST of Csor.00g251800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FI43	3.44e-100	69.20	probable polygalacturonase isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445...	[more]
A0A6J1I4D7	3.87e-100	69.20	probable polygalacturonase isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11147085...	[more]
A0A6J1FGQ0	6.93e-98	68.67	probable polygalacturonase isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445...	[more]
A0A6J1I844	7.80e-98	68.67	probable polygalacturonase isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147085...	[more]
A0A0A0LAN4	1.28e-90	63.87	Pectate_lyase_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G16...	[more]

BLAST of Csor.00g251800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06770.3	7.3e-51	68.50	Pectin lyase-like superfamily protein	[more]
AT3G06770.1	7.3e-51	68.50	Pectin lyase-like superfamily protein	[more]
AT3G06770.2	7.3e-51	68.50	Pectin lyase-like superfamily protein	[more]
AT5G49215.1	1.8e-49	68.00	Pectin lyase-like superfamily protein	[more]
AT5G49215.2	1.8e-49	68.00	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 36..171 e-value: 2.1E-30 score: 107.8
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 64..161 e-value: 4.1E-11 score: 42.5
None	No IPR available	PANTHER	PTHR31339:SF15	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 41..165
None	No IPR available	PANTHER	PTHR31339:SF15	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 4..40
None	No IPR available	PANTHER	PTHR31339	PECTIN LYASE-RELATED	coord: 41..165
None	No IPR available	PANTHER	PTHR31339	PECTIN LYASE-RELATED	coord: 4..40
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 67..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g251800.m01	Csor.00g251800.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity