Csor.00g251320 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g251320
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description50S ribosomal protein L18
LocationCsor_Chr06: 10785734 .. 10788656 (+)
RNA-Seq ExpressionCsor.00g251320
SyntenyCsor.00g251320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCAGCCATTGCTCCATTATCGTTCCTCGGAAGTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCATTCCTCCTCATCTCAATTTTCCGTCGACCACTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGAGAGGACCGTGCTGCTCGCCATTCTCGTATCAGGAAGAAGGTAATCATCGAGTCCTTATTCCTCTATTTAACAACTTACCGCCTTCCCTCCCCTTCGCGTACTTTGTTGTCCTAATTCGGCGTTTCTCTTGTTCCGCATTGTTCTGTGCCCTAAAATTTTTCGGAGATTCACCGGAAATGGAGGTAGGTTGGGATTATTCTTGAAATGAGGTATCTAGGTTTCGTTTGTTTTAATTATTCCCGGGAATTACTCGGTGTTTCTCGGTTCTTATTGCAAGTGTGTGATGTTGTTTTACTTCCTTGTGGATATTGTTTCATTCTAGGTATCTATTTATTGTGAACTTCCAAAGGATTGATTTGATAATTCATGAACTCGTCGTTTATTTTAGAAGTTCTGGTTAGACTAGCTTGGAGGTGTACTTGTATATTAGAATTTTGTCATTGTTCCACTACCAATGTCCTGGATTTCTGAAGATTGAGGAAAAGAGGGAAAAGAACAATGAGCTTGTTTATTTGTCATTGCAGGGAGTCAAAATTTCAAAATAGAAATATTTTATTGTTCTCAGCATCAAATGATGTTCATGAAAGCTGTAATTGGAATTTGTTTCAAGATAAGATCTGCGGAGACTTACAGTGCTTTGGGCCTCAGATGACTTGAAAGTAAATTTACTCATTGGAAAAGCTAAAATTTATAGAAAAATGTAGCTTGTACAAAGAATAGATAGGAAACCAGAGTTTGGGGCCTCGAACACAAAACAAGATAAGAAAGATATCCCACATAGTATTTATTCTTTTAGTTAGGAAACAAGCCTCATATATGGACCACAATCGATTACAGCCGAAATGTGGGATGGTAACTGATCTCTCAAAACTGGAGGGTAAAGATGGTACAAAAATGGATCATTCTACATAAATGCCTCTATGAGATCCCTCTCATTGGTTAGAGATGATAATGAAGCATTCCTTGTAAGGGTGTGGAAACCTCTCCCTAGCAGACATGTTTTAAAACCTTGAGGGGAAGCCCAAAGAAGACAATATCTACTAGCGGTGGGCTTGGACTGTTACAAATGGTACCAGAGCCAGATATCGGGTGGATACCAACGAGGGCGCTAGGCCTCCAAGGAGGTGGATTGTGAGATCCCACATTAGTTGGAAAGGAGAACGAAGCATTCCATGTAAGGGTGTGGAAACCTCTCCCTAGCAGACATGTTTTAAAACCTTGAGGGGAAGCCCAAAGAAAACAATATCTACTAGCGGTGGGCTTGGACTGTTACAAATGGTACCAGAGCCAGATATCGGGTGGTGTACCAACGAGGGCGCTAGGCCTCCAAGGAGGTGGATTGTGAGATCTCACATTAGTTGGAAAGGAGAACGAAGCATTCCTTGTAAGGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAAACTTTGAGGGGAAGCCCAAAGAGGACAATATCTACTAGTGGTGGGCTTGGACTGTTACAAATGGTACCAGAGCCAAATATCGGGTGGTGTACCAACGAGGACGCTAGGCCTCCAAGGAGGTGGATTGTGAGATCCCACATTAGTTGGAGAGGAGAACGAAGCATTCCTTATGAGGGTGTAGAAACCTCTCCCTAGTAGACGCGTTTTAAAATCATGATGCTAACGGTGATACGTAACGGGCCAAAGTGGACGATATTTGCTAGTAGTGGGCTTGAGCTGTTACAAAAACTCTACATATCCTTGACCTGACACTTTGGGAAGGTGACATTTTCAATTTTTGCTATAGGATCTGTCTCCAACTCAAAAACTTTTGGAATACATCTAGACTGGTTAAAAGAAAGATCTCGCTTTATCAAATGGGTATAAATGGCGATCTCACACCCTCTGGGCAATATAAGCCACAGGGTATGGTCAATGAGAAATCTGGGAGATTGACTCCCTTTAGAACAGCACTGAGTTCAAAATTATTATATTTAGAAGAGCCAATTGATTCTTGCTGGTATACAGTAGAACAGTTCACAGTACATTCATCTTCCTGTGCCTCAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGTGAGTTCACTGCAACTAAGAATTAATTCATTTATGTTTAGCTTTCATTCTTACCCAACATCTGTAACGGTCCAAGCTCACCGCTAGCAGATATTGTTCTCTTTGGACTTTCCCTTTTGGGCTTCCTCTAATAGATATTGCCCCCTTCAAAATGTCTTTACATGGACACTGAGTTTAGTTATCGTACATGGCCTTGCTTGAAAAGATTTATTCAATAAGTTCCATCTCTATGCCTTTGAGCTCTAGTCCGACTTGTCATTCTATGTACTCTTATCTATGTACTCTTACATATGTAGCAGGCCATATCGACAGTAGAATTACAAGTTTAGAAACTAAACAGACACCATCATAATTTACGGTCGCATCCGCACCTTCAGAAGTGAAATCTTTGTTATATGTGGATAATATATGATTGCAGGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGA

mRNA sequence

ATGCCTTCAGCCATTGCTCCATTATCGTTCCTCGGAAGTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCATTCCTCCTCATCTCAATTTTCCGTCGACCACTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGAGAGGACCGTGCTGCTCGCCATTCTCGTATCAGGAAGAAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGA

Coding sequence (CDS)

ATGCCTTCAGCCATTGCTCCATTATCGTTCCTCGGAAGTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCATTCCTCCTCATCTCAATTTTCCGTCGACCACTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGAGAGGACCGTGCTGCTCGCCATTCTCGTATCAGGAAGAAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGA

Protein sequence

MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Homology
[Close]
BLAST of Csor.00g251320 vs. ExPASy Swiss-Prot
Match: P82195 (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 221.5 bits (563), Expect = 7.4e-57
Identity = 121/171 (70.76%), Postives = 137/171 (80.12%), Query Frame = 0 

Query: 3   SAIAPLSFLGSSILGVSYS--QNLRIPP-HLNFPSTTSSSGRHSLVIEAKATTRREDRAA 62
           +A   LSF  S++   S S  Q L +PP  +NF   T        +I+AKA TRREDR A
Sbjct: 2   AAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLP------LIQAKAHTRREDRTA 61

Query: 63  RHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGP 122
           RH RIRKKVEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAA STMQK+ISE +DY++GP
Sbjct: 62  RHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGP 121

Query: 123 TIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           T+EVA+K+GE IAKSCLEKGITKVAFDRGGYPYHGRV+ALADAAREHGLVF
Sbjct: 122 TVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 166

[Close]
BLAST of Csor.00g251320 vs. ExPASy Swiss-Prot
Match: Q9SX68 (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 9.0e-55
Identity = 111/138 (80.43%), Postives = 118/138 (85.51%), Query Frame = 0 

Query: 33  PSTTSSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P ++SS    S+V+EAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGLVF 171
           HGR+EALA AAREHGL F
Sbjct: 153 HGRIEALAAAAREHGLQF 170

[Close]
BLAST of Csor.00g251320 vs. ExPASy Swiss-Prot
Match: Q8SAY0 (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.4e-47
Identity = 102/169 (60.36%), Postives = 129/169 (76.33%), Query Frame = 0 

Query: 5   IAPLSFLGSSILGVSYSQNLRIP-PHLNFPSTTSSSGRHSLVIEA--KATTRREDRAARH 64
           +A  +  G+     + S +L IP P ++ PS + +  R SLV+ A  K +T + DR ARH
Sbjct: 2   LASPALAGARAFAATVSGSLGIPIPAISAPSPSQARRRASLVVVAKVKVSTPQADRIARH 61

Query: 65  SRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTI 124
            R+RKKV GTTERPRLSVFRSNKHLY QVIDD+K  TL + STM KS+S+ L+Y++GPT+
Sbjct: 62  VRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTV 121

Query: 125 EVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           EVA+K+GE IAKSCLEKGITKV FDRGG+ YHGR++ALADAARE+GL F
Sbjct: 122 EVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGLDF 170

[Close]
BLAST of Csor.00g251320 vs. ExPASy Swiss-Prot
Match: Q5L3S3 (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rplR PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.3e-33
Identity = 77/118 (65.25%), Postives = 88/118 (74.58%), Query Frame = 0 

Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           LD T+   IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL F
Sbjct: 67  LDSTN--NIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]
BLAST of Csor.00g251320 vs. ExPASy Swiss-Prot
Match: P09415 (50S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.3e-33
Identity = 77/118 (65.25%), Postives = 89/118 (75.42%), Query Frame = 0 

Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GTTERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           LD T+   IE AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL F
Sbjct: 67  LDSTN--NIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]
BLAST of Csor.00g251320 vs. NCBI nr
Match: KAG6597602.1 (50S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 328 bits (842), Expect = 3.03e-113
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60
           MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR
Sbjct: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

[Close]
BLAST of Csor.00g251320 vs. NCBI nr
Match: XP_023538937.1 (50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324 bits (831), Expect = 1.44e-111
Identity = 168/170 (98.82%), Postives = 169/170 (99.41%), Query Frame = 0 

Query: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60
           M SAIAPLSFLG+SILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR
Sbjct: 1   MSSAIAPLSFLGTSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

[Close]
BLAST of Csor.00g251320 vs. NCBI nr
Match: XP_022935706.1 (50S ribosomal protein L18, chloroplastic [Cucurbita moschata])

HSP 1 Score: 321 bits (822), Expect = 3.40e-110
Identity = 167/169 (98.82%), Postives = 167/169 (98.82%), Query Frame = 0 

Query: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60
           M SAIAPLSFLGSSILGVSYSQNLRIPPHLNFPST SSSGRHSLVIEAKATTRREDRAAR
Sbjct: 1   MSSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTISSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV 169
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV 169

[Close]
BLAST of Csor.00g251320 vs. NCBI nr
Match: XP_022972054.1 (50S ribosomal protein L18, chloroplastic [Cucurbita maxima])

HSP 1 Score: 317 bits (811), Expect = 1.62e-108
Identity = 164/170 (96.47%), Postives = 167/170 (98.24%), Query Frame = 0 

Query: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60
           M SA A +SFLGSSILGVSYSQNLR+PPHLNFPS+TSSSGRHSLVIEAKATTRREDRAAR
Sbjct: 1   MSSATAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

[Close]
BLAST of Csor.00g251320 vs. NCBI nr
Match: XP_038885362.1 (50S ribosomal protein L18, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 301 bits (771), Expect = 2.03e-102
Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 0 

Query: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60
           M SA APLSFLG+S L VSYSQNLR  PHL+FP+TTSSSGRHSLV+EA+ATTRREDR+AR
Sbjct: 1   MASATAPLSFLGTSFLSVSYSQNLRNRPHLHFPATTSSSGRHSLVVEAQATTRREDRSAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Csor.00g251320 vs. ExPASy TrEMBL
Match: A0A6J1F5G8 (50S ribosomal protein L18, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442526 PE=3 SV=1)

HSP 1 Score: 321 bits (822), Expect = 1.65e-110
Identity = 167/169 (98.82%), Postives = 167/169 (98.82%), Query Frame = 0 

Query: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60
           M SAIAPLSFLGSSILGVSYSQNLRIPPHLNFPST SSSGRHSLVIEAKATTRREDRAAR
Sbjct: 1   MSSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTISSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV 169
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV 169

[Close]
BLAST of Csor.00g251320 vs. ExPASy TrEMBL
Match: A0A6J1IAC8 (50S ribosomal protein L18, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470699 PE=3 SV=1)

HSP 1 Score: 317 bits (811), Expect = 7.84e-109
Identity = 164/170 (96.47%), Postives = 167/170 (98.24%), Query Frame = 0 

Query: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60
           M SA A +SFLGSSILGVSYSQNLR+PPHLNFPS+TSSSGRHSLVIEAKATTRREDRAAR
Sbjct: 1   MSSATAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

[Close]
BLAST of Csor.00g251320 vs. ExPASy TrEMBL
Match: A0A5A7UA63 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00090 PE=3 SV=1)

HSP 1 Score: 297 bits (760), Expect = 4.67e-101
Identity = 153/170 (90.00%), Postives = 160/170 (94.12%), Query Frame = 0 

Query: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60
           M S  AP SFLG+S L VSYSQN+   PHL+FP+TTSSSGRHSLV+EAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Csor.00g251320 vs. ExPASy TrEMBL
Match: A0A1S3AXQ6 (50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939 PE=3 SV=1)

HSP 1 Score: 297 bits (760), Expect = 4.67e-101
Identity = 153/170 (90.00%), Postives = 160/170 (94.12%), Query Frame = 0 

Query: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60
           M S  AP SFLG+S L VSYSQN+   PHL+FP+TTSSSGRHSLV+EAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Csor.00g251320 vs. ExPASy TrEMBL
Match: A0A0A0L9A4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 290 bits (743), Expect = 1.82e-98
Identity = 150/170 (88.24%), Postives = 157/170 (92.35%), Query Frame = 0 

Query: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60
           M S  AP SFL +S L VSYSQN+   PHL+FP TTSSSGRHSLV+EAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Csor.00g251320 vs. TAIR 10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 214.5 bits (545), Expect = 6.4e-56
Identity = 111/138 (80.43%), Postives = 118/138 (85.51%), Query Frame = 0 

Query: 33  PSTTSSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P ++SS    S+V+EAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGLVF 171
           HGR+EALA AAREHGL F
Sbjct: 153 HGRIEALAAAAREHGLQF 170

[Close]
BLAST of Csor.00g251320 vs. TAIR 10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 84.7 bits (208), Expect = 7.7e-17
Identity = 62/169 (36.69%), Postives = 90/169 (53.25%), Query Frame = 0 

Query: 3   SAIAPLSFLGSSILGVSYSQNLRIPPHLNFP-STTSSSGRHSLVIEAKATTRREDRAARH 62
           ++++ + F  S ILG       R+ P+  FP   T+ S     VIEA+  TR E    R+
Sbjct: 5   TSLSTVQFRVSDILGT------RLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRN 64

Query: 63  SRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTI 122
            R RKK  GT  +PRLSVF S+K LY  ++DD     L   ST+QKSI      T    I
Sbjct: 65  RRSRKKFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VI 124

Query: 123 EVAKKVGEAIAKSCLEKGITKV-AFDRGGYPYHGRVEALADAAREHGLV 170
           E AK+VGE + K+ ++  I ++ ++DR G     R++A   A  +HG +
Sbjct: 125 EAAKRVGEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHGFL 164

[Close]
BLAST of Csor.00g251320 vs. TAIR 10
Match: AT3G17626.1 (structural constituent of ribosome )

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-09
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 117 SGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHG 155
           +G TIE+AKKVGE I KSC+E GITKVAFDR  Y YHG
Sbjct: 10  TGSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

The following BLAST results are available for this feature:
BLAST of Csor.00g251320 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821957.4e-5770.7650S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P... [more]
Q9SX689.0e-5580.4350S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1... [more]
Q8SAY02.4e-4760.3650S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994... [more]
Q5L3S33.3e-3365.2550S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 ... [more]
P094153.3e-3365.2550S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1... [more]
BLAST of Csor.00g251320 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6597602.13.03e-113100.0050S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_023538937.11.44e-11198.8250S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022935706.13.40e-11098.8250S ribosomal protein L18, chloroplastic [Cucurbita moschata][more]
XP_022972054.11.62e-10896.4750S ribosomal protein L18, chloroplastic [Cucurbita maxima][more]
XP_038885362.12.03e-10291.1850S ribosomal protein L18, chloroplastic-like [Benincasa hispida][more]
BLAST of Csor.00g251320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F5G81.65e-11098.8250S ribosomal protein L18, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1IAC87.84e-10996.4750S ribosomal protein L18, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A5A7UA634.67e-10190.0050S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3AXQ64.67e-10190.0050S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939... [more]
A0A0A0L9A41.82e-9888.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1[more]
BLAST of Csor.00g251320 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G48350.16.4e-5680.43Ribosomal L18p/L5e family protein [more]
AT1G14205.17.7e-1736.69Ribosomal L18p/L5e family protein [more]
AT3G17626.11.6e-0973.68structural constituent of ribosome [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 52..170
e-value: 6.3E-46
score: 155.5
IPR005484Ribosomal protein L18PANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 33..170
NoneNo IPR availableGENE3D3.30.420.100coord: 51..170
e-value: 1.2E-46
score: 160.0
NoneNo IPR availablePANTHERPTHR12899:SF339S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 33..170
NoneNo IPR availableCDDcd00432Ribosomal_L18_L5ecoord: 64..168
e-value: 7.41945E-46
score: 143.835
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 53..168
IPR004389Ribosomal protein L18, bacterial-typeTIGRFAMTIGR00060TIGR00060coord: 54..170
e-value: 5.9E-42
score: 140.6
IPR004389Ribosomal protein L18, bacterial-typeHAMAPMF_01337_BRibosomal_L18_Bcoord: 52..170
score: 27.840448

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g251320.m01Csor.00g251320.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0003735 structural constituent of ribosome