Csor.00g250850 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g250850
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Eukaryotic translation initiation factor 4C
Location	Csor_Chr06: 11083305 .. 11083622 (-)
RNA-Seq Expression	Csor.00g250850
Synteny	Csor.00g250850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAAGCGTCTATGCCATATCCGGGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGCGATATAATACTTGTCGGTCTTCGCGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCCGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAACACCCGTCTCAACGAGGGTATTGCTGGTGGTATCGACGATGAGGATGATGGTGGTGCTGATGACTATCTTGAGTTCGAGGACGAAGATATCGACAAGATTTAG

mRNA sequence

ATGTTAGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAAGCGTCTATGCCATATCCGGGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGCGATATAATACTTGTCGGTCTTCGCGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCCGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAACACCCGTCTCAACGAGGGTATTGCTGGTGGTATCGACGATGAGGATGATGGTGGTGCTGATGACTATCTTGAGTTCGAGGACGAAGATATCGACAAGATTTAG

Coding sequence (CDS)

ATGTTAGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAAGCGTCTATGCCATATCCGGGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGCGATATAATACTTGTCGGTCTTCGCGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCCGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAACACCCGTCTCAACGAGGGTATTGCTGGTGGTATCGACGATGAGGATGATGGTGGTGCTGATGACTATCTTGAGTTCGAGGACGAAGATATCGACAAGATTTAG

Protein sequence

MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI

Homology

[Close]

BLAST of Csor.00g250850 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 3.3e-47
Identity = 95/106 (89.62%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEA CIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEA
Sbjct: 41  MLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEA 100

Query: 61  RLLKAYGELPENTRLNEGI-AGGIDDEDDGGADDYLEFEDEDIDKI 106
           RLLKAYGELP+NTRLNEGI AGG+D+E D  A+DY+EFEDEDIDKI
Sbjct: 101 RLLKAYGELPDNTRLNEGIGAGGLDEEMD-TANDYIEFEDEDIDKI 145

[Close]

BLAST of Csor.00g250850 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 174.9 bits (442), Expect = 4.9e-43
Identity = 85/106 (80.19%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEA C+DGTKRLCHIRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEA
Sbjct: 41  MLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDG-GADDYLEFEDEDIDKI 106
           RLLKAYGELP+  RLNEG+   +D  ++G G  DY++FEDEDIDKI
Sbjct: 101 RLLKAYGELPDTVRLNEGV--DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]

BLAST of Csor.00g250850 vs. ExPASy Swiss-Prot
Match: Q6GVM3 (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes OX=9598 GN=EIF1AY PE=2 SV=3)

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-31
Identity = 71/105 (67.62%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGR EA C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEA
Sbjct: 41  MLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 106
           R LKAYGELPE+ ++NE    G  D+D+   DD +  +DEDID I
Sbjct: 101 RSLKAYGELPEHAKINETDTFGPGDDDEVQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Csor.00g250850 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-31
Identity = 71/105 (67.62%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGR EA C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 106
           R LKAYGELPE+ ++NE    G  D+D+   DD +  +DEDID I
Sbjct: 101 RSLKAYGELPEHAKINETDTFGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Csor.00g250850 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-31
Identity = 71/105 (67.62%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGR EA C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 106
           R LKAYGELPE+ ++NE    G  D+D+   DD +  +DEDID I
Sbjct: 101 RSLKAYGELPEHAKINETDTFGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Csor.00g250850 vs. NCBI nr
Match: KAG6597649.1 (hypothetical protein SDJN03_10829, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217 bits (552), Expect = 4.01e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Sbjct: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105
           RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105

[Close]

BLAST of Csor.00g250850 vs. NCBI nr
Match: XP_022932723.1 (eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022972115.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_023540729.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo] >XP_023540730.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217 bits (552), Expect = 1.48e-70
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Sbjct: 41  MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105
           RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 101 RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Csor.00g250850 vs. NCBI nr
Match: KAG6582047.1 (hypothetical protein SDJN03_22049, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213 bits (541), Expect = 1.91e-69
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEA CIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Sbjct: 1   MLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105
           RLLKAYGELPE+TRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 61  RLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105

[Close]

BLAST of Csor.00g250850 vs. NCBI nr
Match: XP_022145199.1 (eukaryotic translation initiation factor 1A [Momordica charantia] >XP_022956094.1 eukaryotic translation initiation factor 1A [Cucurbita moschata] >XP_022956095.1 eukaryotic translation initiation factor 1A [Cucurbita moschata] >XP_022979975.1 eukaryotic translation initiation factor 1A [Cucurbita maxima] >XP_022979976.1 eukaryotic translation initiation factor 1A [Cucurbita maxima] >XP_023527417.1 eukaryotic translation initiation factor 1A [Cucurbita pepo subsp. pepo] >XP_023527418.1 eukaryotic translation initiation factor 1A [Cucurbita pepo subsp. pepo] >XP_038902096.1 eukaryotic translation initiation factor 1A [Benincasa hispida] >XP_038902102.1 eukaryotic translation initiation factor 1A [Benincasa hispida])

HSP 1 Score: 213 bits (541), Expect = 7.05e-69
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEA CIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Sbjct: 41  MLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105
           RLLKAYGELPE+TRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 101 RLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Csor.00g250850 vs. NCBI nr
Match: XP_021280987.1 (eukaryotic translation initiation factor 1A [Herrania umbratica] >OMO64371.1 Translation initiation factor 1A (eIF-1A) [Corchorus capsularis] >OMP08574.1 Translation initiation factor 1A (eIF-1A) [Corchorus olitorius])

HSP 1 Score: 212 bits (540), Expect = 1.00e-68
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEA CIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Sbjct: 41  MLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105
           RLLKAYGELPENTRLNEGIAGGID+EDDGGADDY+EFEDEDIDKI
Sbjct: 101 RLLKAYGELPENTRLNEGIAGGIDEEDDGGADDYIEFEDEDIDKI 145

[Close]

BLAST of Csor.00g250850 vs. ExPASy TrEMBL
Match: A0A6J1I7M9 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111470747 PE=3 SV=1)

HSP 1 Score: 217 bits (552), Expect = 7.18e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Sbjct: 41  MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105
           RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 101 RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Csor.00g250850 vs. ExPASy TrEMBL
Match: A0A6J1F2J6 (Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC111439187 PE=3 SV=1)

HSP 1 Score: 217 bits (552), Expect = 7.18e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Sbjct: 41  MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105
           RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 101 RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Csor.00g250850 vs. ExPASy TrEMBL
Match: A0A6J1IS99 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111479507 PE=3 SV=1)

HSP 1 Score: 213 bits (541), Expect = 3.41e-69
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEA CIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Sbjct: 41  MLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105
           RLLKAYGELPE+TRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 101 RLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Csor.00g250850 vs. ExPASy TrEMBL
Match: A0A6J1GY26 (Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC111457892 PE=3 SV=1)

HSP 1 Score: 213 bits (541), Expect = 3.41e-69
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEA CIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Sbjct: 41  MLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105
           RLLKAYGELPE+TRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 101 RLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Csor.00g250850 vs. ExPASy TrEMBL
Match: A0A6J1CUI5 (Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LOC111014705 PE=3 SV=1)

HSP 1 Score: 213 bits (541), Expect = 3.41e-69
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEA CIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Sbjct: 41  MLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105
           RLLKAYGELPE+TRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 101 RLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Csor.00g250850 vs. TAIR 10
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 195.7 bits (496), Expect = 1.9e-50
Identity = 92/105 (87.62%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRCEA CIDGTKRLCHIRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEA
Sbjct: 41  MLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 106
           RLLKAYGELPENTRLNEGI G ++D+DD   DDY+EFEDEDID+I
Sbjct: 101 RLLKAYGELPENTRLNEGIVGDLEDDDDNNDDDYVEFEDEDIDRI 145

[Close]

BLAST of Csor.00g250850 vs. TAIR 10
Match: AT5G35680.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 190.3 bits (482), Expect = 8.0e-49
Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRC+  CIDG KRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEA
Sbjct: 41  MLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 106
           RLLKAYGELPENTRLNEGI G +DD+DD   +DY+EFEDEDID+I
Sbjct: 101 RLLKAYGELPENTRLNEGIVGDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of Csor.00g250850 vs. TAIR 10
Match: AT5G35680.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 190.3 bits (482), Expect = 8.0e-49
Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRC+  CIDG KRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEA
Sbjct: 41  MLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 106
           RLLKAYGELPENTRLNEGI G +DD+DD   +DY+EFEDEDID+I
Sbjct: 101 RLLKAYGELPENTRLNEGIVGDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of Csor.00g250850 vs. TAIR 10
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-42
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1   MLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 60
           MLGNGRC+  CIDG KRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEA
Sbjct: 41  MLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEA 100

Query: 61  RLLKAYGELPENTRLNEGIAGGIDDEDD 89
           RLLKAYGELPENTRLNEGI G +DD+DD
Sbjct: 101 RLLKAYGELPENTRLNEGIVGDLDDDDD 128

The following BLAST results are available for this feature:

BLAST of Csor.00g250850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56331	3.3e-47	89.62	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=...	[more]
P47815	4.9e-43	80.19	Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV...	[more]
Q6GVM3	1.5e-31	67.62	Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes OX...	[more]
P47813	1.9e-31	67.62	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96...	[more]
Q8BMJ3	1.9e-31	67.62	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10...	[more]

BLAST of Csor.00g250850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597649.1	4.01e-71	100.00	hypothetical protein SDJN03_10829, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022932723.1	1.48e-70	100.00	eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022972...	[more]
KAG6582047.1	1.91e-69	98.10	hypothetical protein SDJN03_22049, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022145199.1	7.05e-69	98.10	eukaryotic translation initiation factor 1A [Momordica charantia] >XP_022956094....	[more]
XP_021280987.1	1.00e-68	97.14	eukaryotic translation initiation factor 1A [Herrania umbratica] >OMO64371.1 Tra...	[more]

BLAST of Csor.00g250850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7M9	7.18e-71	100.00	Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1F2J6	7.18e-71	100.00	Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IS99	3.41e-69	98.10	Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GY26	3.41e-69	98.10	Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1CUI5	3.41e-69	98.10	Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Csor.00g250850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04520.1	1.9e-50	87.62	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.1	8.0e-49	85.71	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.2	8.0e-49	85.71	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	1.1e-42	89.77	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 1..70 e-value: 6.5E-33 score: 125.3
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 1..105
IPR001253	Translation initiation factor 1A (eIF-1A)	CDD	cd05793	S1_IF1A	coord: 1..69 e-value: 6.81229E-38 score: 120.321
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 1..53 e-value: 9.0E-19 score: 67.1
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 1..56 score: 26.081738
None	No IPR available	GENE3D	2.40.50.140		coord: 1..105 e-value: 1.8E-37 score: 129.9
None	No IPR available	PANTHER	PTHR21668:SF18	EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE	coord: 1..105
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 1..23
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g250850.m01	Csor.00g250850.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding