Csor.00g250440 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g250440
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	rho GTPase-activating protein gacH
Location	Csor_Chr06: 11326915 .. 11328160 (+)
RNA-Seq Expression	Csor.00g250440
Synteny	Csor.00g250440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCCACGGATGATGGTCGACAAGACGTCCTGGACCCCAACTGAGTTGTTCCGGTAAGATTCCCACGCGCGTAAGCCTCCTCTTCACGCCCACACATTAATTAATTAATTATTTATTAAAAAAAAAGAAAAAGGTTGTTAATTTCCATCTCCCATTTTCTTTCTTTCCTTCTGGTTCCTTCATTTGTTGTTCATGTTCCTAAGCTTTGGTGGGTTAGTAATGAGTATACCTCCAAATATGGCAACAATCACAGCCGCCTTAGAACGCTCTCTTCAAAACTGTTCCTTAAGCCGCCACCGCCGCCGCCATCATGATCATCATCACCAACAACAACAAGCCCCAAATTCCTCTTCTTCTGATCTTCTTCAACCTCCCACCACTTTGGACCTCAACTCCCATATCTCTCTCCCTTACCACTGGGAGCAGTGTCTCGATCTAAAGGTTATTTTTTTCTTCTGGGTTCGGTTGATTATTATTGGGAGGAAGTCTTAGATTAGCTAATTTAGGGAATGATCATCAGTTTCTCCTCGTGGGAAGCCCAAAGCTCTTCTGGGTGGGAGTGAGTCGCTAATTTAGGGAATGATCATGAGTTTATAAGTAAAAGAATACATCTCTATTGATATGAGGCATTTTGGGAAGGGTAAAATAAAGCCACAAGAGCTTGTGTTCAAAATGGACAATATCGTACCATTGTGGAGAGTCGTTATTCCTACACAAACTTATTAGGGTTTCGTGTTTGGGTATAGAATTCATGGAAAGGAAGGAACTTTAAGGGGTTTTTTGAAATTTTGCTTAATGGGTTTTGCTTAAATGTGGAGGGTTGCTTATAATTTGAAGAGAATATGGAGAATGTGAGGTTTTTTGTTTGTTTTTTTGGCAGACGGGGGAGATTTACTACATAAACTGGAGGAATGGAATGAAGGCGAAGGAGGATCCGAGGTCTATCACAGAAGATCATTATAGTGAAGATTACTATTACTCGGATGACGATGACGATGACGATGAGGATAGCAACGAGTCGTCGACGGAGTCATCGAATAACAACAACGAGAACAACAAGAACTATGCAGCGATGGAAGAACAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGATGTGTTGGTGGTGGCAGGTTGCAAGAGCTGCCTAATGTATTTTATGGTGCCAAAGCTGGTTGAAGATTGTCCAAAATGCAGTAATGGTCAGCTTCTTCATTTTGATCGCTCTGAAAATGAGATTCCATGA

mRNA sequence

ATGCGTCCACGGATGATGGTCGACAAGACGTCCTGGACCCCAACTGAGTTGTTCCGCTTTGGTGGGTTAGTAATGAGTATACCTCCAAATATGGCAACAATCACAGCCGCCTTAGAACGCTCTCTTCAAAACTGTTCCTTAAGCCGCCACCGCCGCCGCCATCATGATCATCATCACCAACAACAACAAGCCCCAAATTCCTCTTCTTCTGATCTTCTTCAACCTCCCACCACTTTGGACCTCAACTCCCATATCTCTCTCCCTTACCACTGGGAGCAGTGTCTCGATCTAAAGACGGGGGAGATTTACTACATAAACTGGAGGAATGGAATGAAGGCGAAGGAGGATCCGAGGTCTATCACAGAAGATCATTATAGTGAAGATTACTATTACTCGGATGACGATGACGATGACGATGAGGATAGCAACGAGTCGTCGACGGAGTCATCGAATAACAACAACGAGAACAACAAGAACTATGCAGCGATGGAAGAACAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGATGTGTTGGTGGTGGCAGGTTGCAAGAGCTGCCTAATGTATTTTATGGTGCCAAAGCTGGTTGAAGATTGTCCAAAATGCAGTAATGGTCAGCTTCTTCATTTTGATCGCTCTGAAAATGAGATTCCATGA

Coding sequence (CDS)

ATGCGTCCACGGATGATGGTCGACAAGACGTCCTGGACCCCAACTGAGTTGTTCCGCTTTGGTGGGTTAGTAATGAGTATACCTCCAAATATGGCAACAATCACAGCCGCCTTAGAACGCTCTCTTCAAAACTGTTCCTTAAGCCGCCACCGCCGCCGCCATCATGATCATCATCACCAACAACAACAAGCCCCAAATTCCTCTTCTTCTGATCTTCTTCAACCTCCCACCACTTTGGACCTCAACTCCCATATCTCTCTCCCTTACCACTGGGAGCAGTGTCTCGATCTAAAGACGGGGGAGATTTACTACATAAACTGGAGGAATGGAATGAAGGCGAAGGAGGATCCGAGGTCTATCACAGAAGATCATTATAGTGAAGATTACTATTACTCGGATGACGATGACGATGACGATGAGGATAGCAACGAGTCGTCGACGGAGTCATCGAATAACAACAACGAGAACAACAAGAACTATGCAGCGATGGAAGAACAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGATGTGTTGGTGGTGGCAGGTTGCAAGAGCTGCCTAATGTATTTTATGGTGCCAAAGCTGGTTGAAGATTGTCCAAAATGCAGTAATGGTCAGCTTCTTCATTTTGATCGCTCTGAAAATGAGATTCCATGA

Protein sequence

MRPRMMVDKTSWTPTELFRFGGLVMSIPPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTLDLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYSDDDDDDDEDSNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCSNGQLLHFDRSENEIP

Homology

[Close]

BLAST of Csor.00g250440 vs. NCBI nr
Match: KAG6597689.1 (hypothetical protein SDJN03_10869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 431 bits (1108), Expect = 3.26e-152
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MRPRMMVDKTSWTPTELFRFGGLVMSIPPNMATITAALERSLQNCSLSRHRRRHHDHHHQ 60
           MRPRMMVDKTSWTPTELFRFGGLVMSIPPNMATITAALERSLQNCSLSRHRRRHHDHHHQ
Sbjct: 1   MRPRMMVDKTSWTPTELFRFGGLVMSIPPNMATITAALERSLQNCSLSRHRRRHHDHHHQ 60

Query: 61  QQQAPNSSSSDLLQPPTTLDLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSI 120
           QQQAPNSSSSDLLQPPTTLDLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSI
Sbjct: 61  QQQAPNSSSSDLLQPPTTLDLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSI 120

Query: 121 TEDHYSEDYYYSDDDDDDDEDSNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVV 180
           TEDHYSEDYYYSDDDDDDDEDSNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVV
Sbjct: 121 TEDHYSEDYYYSDDDDDDDEDSNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVV 180

Query: 181 AGCKSCLMYFMVPKLVEDCPKCSNGQLLHFDRSENEIP 218
           AGCKSCLMYFMVPKLVEDCPKCSNGQLLHFDRSENEIP
Sbjct: 181 AGCKSCLMYFMVPKLVEDCPKCSNGQLLHFDRSENEIP 218

[Close]

BLAST of Csor.00g250440 vs. NCBI nr
Match: KAG7029133.1 (hypothetical protein SDJN02_10318 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 387 bits (994), Expect = 4.56e-135
Identity = 197/199 (98.99%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 20  FGGLVMSIPPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTL 79
           FGGLVMS PPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTL
Sbjct: 5   FGGLVMSTPPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTL 64

Query: 80  DLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYSDDDDDDD 139
           DLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYSDDDDDDD
Sbjct: 65  DLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYSDDDDDDD 124

Query: 140 EDSNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDC 199
           EDS+ESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDC
Sbjct: 125 EDSDESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDC 184

Query: 200 PKCSNGQLLHFDRSENEIP 218
           PKCSNGQLLHFDRSENEIP
Sbjct: 185 PKCSNGQLLHFDRSENEIP 203

[Close]

BLAST of Csor.00g250440 vs. NCBI nr
Match: XP_023540596.1 (histone chaperone RTT106-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370 bits (950), Expect = 2.09e-128
Identity = 193/199 (96.98%), Postives = 193/199 (96.98%), Query Frame = 0


Query: 20  FGGLVMSIPPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTL 79
           FGGLVMS PPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTL
Sbjct: 5   FGGLVMSTPPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTL 64

Query: 80  DLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYSDDDDDDD 139
           DLNSHISLP HWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYSDDDDDDD
Sbjct: 65  DLNSHISLPCHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYSDDDDDDD 124

Query: 140 EDSNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDC 199
            D  ESSTESSNNNNENNKNYAAMEEQE EEEEEEEDVLVVAGCKSCLMYFMVPKLVEDC
Sbjct: 125 SD--ESSTESSNNNNENNKNYAAMEEQE-EEEEEEEDVLVVAGCKSCLMYFMVPKLVEDC 184

Query: 200 PKCSNGQLLHFDRSENEIP 218
           PKCSNGQLLHFDRSENEIP
Sbjct: 185 PKCSNGQLLHFDRSENEIP 200

[Close]

BLAST of Csor.00g250440 vs. NCBI nr
Match: XP_022932700.1 (rho GTPase-activating protein gacH [Cucurbita moschata])

HSP 1 Score: 362 bits (930), Expect = 2.25e-125
Identity = 191/199 (95.98%), Postives = 192/199 (96.48%), Query Frame = 0


Query: 20  FGGLVMSIPPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTL 79
           FGGLVMS PPNMATITAALERSLQNCSLSR RRRHHDHHHQQQQAPNSSSSDLLQPPTTL
Sbjct: 5   FGGLVMSTPPNMATITAALERSLQNCSLSR-RRRHHDHHHQQQQAPNSSSSDLLQPPTTL 64

Query: 80  DLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYSDDDDDDD 139
           DLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR ITEDHYSEDYYYSDD  DDD
Sbjct: 65  DLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRPITEDHYSEDYYYSDD--DDD 124

Query: 140 EDSNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDC 199
           EDS+ESSTESSNNNNEN KNYAAMEEQE EEEEEEEDVLVVAGCKSCLMYFMVPKLVEDC
Sbjct: 125 EDSDESSTESSNNNNENKKNYAAMEEQE-EEEEEEEDVLVVAGCKSCLMYFMVPKLVEDC 184

Query: 200 PKCSNGQLLHFDRSENEIP 218
           PKCSNGQLLHFDRSENEIP
Sbjct: 185 PKCSNGQLLHFDRSENEIP 199

[Close]

BLAST of Csor.00g250440 vs. NCBI nr
Match: XP_023540597.1 (uncharacterized protein LOC111800911 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359 bits (921), Expect = 1.04e-123
Identity = 193/217 (88.94%), Postives = 193/217 (88.94%), Query Frame = 0


Query: 20  FGGLVMSIPPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTL 79
           FGGLVMS PPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTL
Sbjct: 5   FGGLVMSTPPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTL 64

Query: 80  DLNSHISLPYHWEQCLDLK------------------TGEIYYINWRNGMKAKEDPRSIT 139
           DLNSHISLP HWEQCLDLK                  TGEIYYINWRNGMKAKEDPRSIT
Sbjct: 65  DLNSHISLPCHWEQCLDLKVIFFGFKCEVFCLFFFWQTGEIYYINWRNGMKAKEDPRSIT 124

Query: 140 EDHYSEDYYYSDDDDDDDEDSNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVA 199
           EDHYSEDYYYSDDDDDDD D  ESSTESSNNNNENNKNYAAMEEQE EEEEEEEDVLVVA
Sbjct: 125 EDHYSEDYYYSDDDDDDDSD--ESSTESSNNNNENNKNYAAMEEQE-EEEEEEEDVLVVA 184

Query: 200 GCKSCLMYFMVPKLVEDCPKCSNGQLLHFDRSENEIP 218
           GCKSCLMYFMVPKLVEDCPKCSNGQLLHFDRSENEIP
Sbjct: 185 GCKSCLMYFMVPKLVEDCPKCSNGQLLHFDRSENEIP 218

[Close]

BLAST of Csor.00g250440 vs. ExPASy TrEMBL
Match: A0A6J1F2V9 (rho GTPase-activating protein gacH OS=Cucurbita moschata OX=3662 GN=LOC111439168 PE=4 SV=1)

HSP 1 Score: 362 bits (930), Expect = 1.09e-125
Identity = 191/199 (95.98%), Postives = 192/199 (96.48%), Query Frame = 0


Query: 20  FGGLVMSIPPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTL 79
           FGGLVMS PPNMATITAALERSLQNCSLSR RRRHHDHHHQQQQAPNSSSSDLLQPPTTL
Sbjct: 5   FGGLVMSTPPNMATITAALERSLQNCSLSR-RRRHHDHHHQQQQAPNSSSSDLLQPPTTL 64

Query: 80  DLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYSDDDDDDD 139
           DLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR ITEDHYSEDYYYSDD  DDD
Sbjct: 65  DLNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRPITEDHYSEDYYYSDD--DDD 124

Query: 140 EDSNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDC 199
           EDS+ESSTESSNNNNEN KNYAAMEEQE EEEEEEEDVLVVAGCKSCLMYFMVPKLVEDC
Sbjct: 125 EDSDESSTESSNNNNENKKNYAAMEEQE-EEEEEEEDVLVVAGCKSCLMYFMVPKLVEDC 184

Query: 200 PKCSNGQLLHFDRSENEIP 218
           PKCSNGQLLHFDRSENEIP
Sbjct: 185 PKCSNGQLLHFDRSENEIP 199

[Close]

BLAST of Csor.00g250440 vs. ExPASy TrEMBL
Match: A0A6J1I5N3 (uncharacterized protein LOC111470894 OS=Cucurbita maxima OX=3661 GN=LOC111470894 PE=4 SV=1)

HSP 1 Score: 344 bits (883), Expect = 1.28e-118
Identity = 183/197 (92.89%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 25  MSIPPNMATITAALERSLQNCSLSRHRRR-HHDHHHQQQQAPNSSSSDLLQPPTTLDLNS 84
           MS PPNMATITAALERSLQNCSLSRHRRR HHDHH QQQ APNSSSS LLQPPTTLDLNS
Sbjct: 1   MSTPPNMATITAALERSLQNCSLSRHRRRRHHDHHQQQQHAPNSSSSHLLQPPTTLDLNS 60

Query: 85  HISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYSDDDDDDDEDSN 144
           HISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYY DDDDD    S+
Sbjct: 61  HISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYFDDDDD----SD 120

Query: 145 ESSTESSNNNNENNKNYAAMEEQEE--EEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPK 204
           ESSTESSNNNN+NNKNYAAMEEQEE  EEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPK
Sbjct: 121 ESSTESSNNNNKNNKNYAAMEEQEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPK 180

Query: 205 CSNGQLLHFDRSENEIP 218
           CSNGQLLHFDRSENEIP
Sbjct: 181 CSNGQLLHFDRSENEIP 193

[Close]

BLAST of Csor.00g250440 vs. ExPASy TrEMBL
Match: A0A6J1GTR7 (uncharacterized protein LOC111457490 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457490 PE=4 SV=1)

HSP 1 Score: 223 bits (569), Expect = 4.68e-71
Identity = 133/198 (67.17%), Postives = 146/198 (73.74%), Query Frame = 0


Query: 25  MSIPPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTLDLNSH 84
           MS  P MAT+TAALERSL+NCSLS          H+Q   P  S S        L LNSH
Sbjct: 1   MSRAPTMATVTAALERSLENCSLS----------HRQAAPPVPSDSHGGSSTHHLHLNSH 60

Query: 85  ISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITED-HYSEDYY-YSDDDDDDDE-- 144
           +SLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR  TED  YS+DYY YSDDDDDDD   
Sbjct: 61  LSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRFTTEDDQYSDDYYCYSDDDDDDDSSY 120

Query: 145 DSNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCP 204
           DS ESST SSNN N+N KN          EE++EEDVLVVAGCK CLMYFMVPK +E+CP
Sbjct: 121 DSEESSTASSNNKNKN-KNM---------EEQQEEDVLVVAGCKRCLMYFMVPKHLEECP 178

Query: 205 KCSNGQLLHFDRSENEIP 218
           KCS+G+LLHFDRSEN+IP
Sbjct: 181 KCSSGELLHFDRSENDIP 178

[Close]

BLAST of Csor.00g250440 vs. ExPASy TrEMBL
Match: A0A6J1IQL3 (methionine aminopeptidase 2-like OS=Cucurbita maxima OX=3661 GN=LOC111479618 PE=4 SV=1)

HSP 1 Score: 221 bits (564), Expect = 3.17e-70
Identity = 133/203 (65.52%), Postives = 148/203 (72.91%), Query Frame = 0


Query: 25  MSIPPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTLDLNSH 84
           MS  P MAT+TAALERSLQNCSLS          H+Q   P  S S        L LNSH
Sbjct: 1   MSRTPTMATVTAALERSLQNCSLS----------HRQATPPVPSDSHGGSSTHHLHLNSH 60

Query: 85  ISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITED-HYSEDYY-YSDDDDDDDED- 144
           +SLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR  TED  YS+DYY YSDDDDD+D+D 
Sbjct: 61  LSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRFTTEDDQYSDDYYCYSDDDDDNDDDD 120

Query: 145 ------SNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLMYFMVPKL 204
                 S ESSTESSNN N+N KN          EE++EEDVLVVAGCK CLMYFMVPK 
Sbjct: 121 DDSSYDSEESSTESSNNKNKN-KNM---------EEQQEEDVLVVAGCKRCLMYFMVPKH 180

Query: 205 VEDCPKCSNGQLLHFDRSENEIP 218
           +E+CPKCS+G+LL+FDRSEN+IP
Sbjct: 181 LEECPKCSSGELLYFDRSENDIP 183

[Close]

BLAST of Csor.00g250440 vs. ExPASy TrEMBL
Match: A0A6J1GTV5 (protein Tube-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457490 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 1.56e-69
Identity = 133/209 (63.64%), Postives = 147/209 (70.33%), Query Frame = 0


Query: 25  MSIPPNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTLDLNSH 84
           MS  P MAT+TAALERSL+NCSLS          H+Q   P  S S        L LNSH
Sbjct: 1   MSRAPTMATVTAALERSLENCSLS----------HRQAAPPVPSDSHGGSSTHHLHLNSH 60

Query: 85  ISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITED-HYSEDYY-YSDDDDDDDED- 144
           +SLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR  TED  YS+DYY YSDDDDDDD+D 
Sbjct: 61  LSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRFTTEDDQYSDDYYCYSDDDDDDDDDD 120

Query: 145 ------------SNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLMY 204
                       S ESST SSNN N+N KN          EE++EEDVLVVAGCK CLMY
Sbjct: 121 DDDDDDDDSSYDSEESSTASSNNKNKN-KNM---------EEQQEEDVLVVAGCKRCLMY 180

Query: 205 FMVPKLVEDCPKCSNGQLLHFDRSENEIP 218
           FMVPK +E+CPKCS+G+LLHFDRSEN+IP
Sbjct: 181 FMVPKHLEECPKCSSGELLHFDRSENDIP 189

[Close]

BLAST of Csor.00g250440 vs. TAIR 10
Match: AT2G33510.1 (CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). )

HSP 1 Score: 179.9 bits (455), Expect = 2.2e-45
Identity = 114/189 (60.32%), Postives = 136/189 (71.96%), Query Frame = 0


Query: 29  PNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQP--PTTLDLNSHIS 88
           PNM TIT +LE+S+ NCSL+  RRR       +     SSS++ + P    TL+LNSH+S
Sbjct: 4   PNMETITESLEKSMMNCSLNDRRRRVVGDGFGR-----SSSNEHMTPISDRTLELNSHLS 63

Query: 89  LPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSI-TEDHYSEDYY--YSDDDDDDDEDSN 148
           LP HWEQCLDLKTGEIYYINW+NGM+ KEDPR +   D  S D Y     ++D    DS 
Sbjct: 64  LPCHWEQCLDLKTGEIYYINWKNGMRVKEDPRKVMNADPDSGDSYGTVCSEEDSSYYDSE 123

Query: 149 ESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCS 208
           ESS+ESS ++ EN+K     EE+EEEEEEEEEDVLVVAGCK+C MYFMVPKLVEDCPKC+
Sbjct: 124 ESSSESSPSSRENHKE---EEEEEEEEEEEEEDVLVVAGCKACFMYFMVPKLVEDCPKCA 183

Query: 209 NGQLLHFDR 213
             QLLHFDR
Sbjct: 184 -AQLLHFDR 183

[Close]

BLAST of Csor.00g250440 vs. TAIR 10
Match: AT2G33510.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1). )

HSP 1 Score: 169.9 bits (429), Expect = 2.3e-42
Identity = 114/204 (55.88%), Postives = 136/204 (66.67%), Query Frame = 0


Query: 29  PNMATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQP--PTTLDLNSHIS 88
           PNM TIT +LE+S+ NCSL+  RRR       +     SSS++ + P    TL+LNSH+S
Sbjct: 4   PNMETITESLEKSMMNCSLNDRRRRVVGDGFGR-----SSSNEHMTPISDRTLELNSHLS 63

Query: 89  LPYHWEQCLDLK---------------TGEIYYINWRNGMKAKEDPRSI-TEDHYSEDYY 148
           LP HWEQCLDLK               TGEIYYINW+NGM+ KEDPR +   D  S D Y
Sbjct: 64  LPCHWEQCLDLKVKLITTETSNSCRFRTGEIYYINWKNGMRVKEDPRKVMNADPDSGDSY 123

Query: 149 --YSDDDDDDDEDSNESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLM 208
                ++D    DS ESS+ESS ++ EN+K     EE+EEEEEEEEEDVLVVAGCK+C M
Sbjct: 124 GTVCSEEDSSYYDSEESSSESSPSSRENHKE---EEEEEEEEEEEEEDVLVVAGCKACFM 183

Query: 209 YFMVPKLVEDCPKCSNGQLLHFDR 213
           YFMVPKLVEDCPKC+  QLLHFDR
Sbjct: 184 YFMVPKLVEDCPKCA-AQLLHFDR 198

[Close]

BLAST of Csor.00g250440 vs. TAIR 10
Match: AT1G28070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33510.1); Has 85 Blast hits to 77 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-29
Identity = 90/196 (45.92%), Postives = 117/196 (59.69%), Query Frame = 0


Query: 31  MATITAALERSLQNCSLSRHRRRHHDHHHQQQQAPNSSSSDLLQPPTTLDLNSHISLPYH 90
           MA IT  LERS+QNCSL   R    D           S   +      L+L+SH S+P H
Sbjct: 1   MADITEYLERSMQNCSLIDRRSSMGDGF-------GMSDEHIPISDRFLELSSHFSVPSH 60

Query: 91  WEQCLDLKTGEIYYINWRNGMKAKEDPR-SITEDHY-------SEDYYYSDDDDDDDEDS 150
            EQCLDLKTGEIYY +W +GM+ KEDPR S++  +Y       S    +S ++     +S
Sbjct: 61  LEQCLDLKTGEIYYRSWNSGMRVKEDPRKSMSRGNYADQSSGESSGTVFSSEEVSSYYES 120

Query: 151 NESSTESSNNNNENNKNYAAMEEQEEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKC 210
            ESS+ESS ++ + +K            EE++EDVLVVAGCK+CLMYFMVPKL +DCPKC
Sbjct: 121 EESSSESSPSSRKYHK------------EEQDEDVLVVAGCKACLMYFMVPKLFKDCPKC 176

Query: 211 SNGQLLHFDRSENEIP 219
           +  QLLHFD+  +  P
Sbjct: 181 AT-QLLHFDQLHSTSP 176

The following BLAST results are available for this feature:

BLAST of Csor.00g250440 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g250440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597689.1	3.26e-152	100.00	hypothetical protein SDJN03_10869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7029133.1	4.56e-135	98.99	hypothetical protein SDJN02_10318 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023540596.1	2.09e-128	96.98	histone chaperone RTT106-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022932700.1	2.25e-125	95.98	rho GTPase-activating protein gacH [Cucurbita moschata]	[more]
XP_023540597.1	1.04e-123	88.94	uncharacterized protein LOC111800911 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g250440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F2V9	1.09e-125	95.98	rho GTPase-activating protein gacH OS=Cucurbita moschata OX=3662 GN=LOC111439168...	[more]
A0A6J1I5N3	1.28e-118	92.89	uncharacterized protein LOC111470894 OS=Cucurbita maxima OX=3661 GN=LOC111470894...	[more]
A0A6J1GTR7	4.68e-71	67.17	uncharacterized protein LOC111457490 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IQL3	3.17e-70	65.52	methionine aminopeptidase 2-like OS=Cucurbita maxima OX=3661 GN=LOC111479618 PE=...	[more]
A0A6J1GTV5	1.56e-69	63.64	protein Tube-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457490 PE=4 ...	[more]

BLAST of Csor.00g250440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33510.1	2.2e-45	60.32	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis t...	[more]
AT2G33510.2	2.3e-42	55.88	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_c...	[more]
AT1G28070.1	1.3e-29	45.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 152..176
None	No IPR available	GENE3D	2.20.70.10		coord: 86..122 e-value: 2.5E-5 score: 25.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..176
None	No IPR available	PANTHER	PTHR14791:SF43	BNAA04G19570D PROTEIN	coord: 36..213
None	No IPR available	PANTHER	PTHR14791	BOMB/KIRA PROTEINS	coord: 36..213
IPR036020	WW domain superfamily	SUPERFAMILY	51045	WW domain	coord: 83..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g250440.m01	Csor.00g250440.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding