Csor.00g250390 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGAATCAGGAAAATCTTGATGCTGATGGGAAAGTGGAGTCTGTGATATCAATTCAAACACCAGACTATGATAGTTGGGACACTTTTGGTGACGATGAAATCATGCAGCAGAAATCTGCAATTTTTGTTCAGGAGGCTGAGAAAGTTCCATTTGTTGGTGACAAGGCAGGTTCACCTATTTAAGTTTAATATCCTGCATTTTTTTAGTCTTGATGTTGCAACACTTTTACCTCTTTTTCTTCCGTGTGTTTGTGTTTTTGGTTCTTTTTTTTTTTTTTTTTGTTTGGTACATGTTTCATCTTATACTGTTGCATCTGGCGTTCTGTTGTGTTCCTGGATTTTTATTATCCATTTTTTCATCCTTATTTGCATTCAAGGACCATGCTTCATCCACCTATGCTATGAAGTGGGAAACCAAGTTTTAATCTTTATTCTTCCCTTCTTTTTCCATATTATGCTATGAAGTGGATACACTTATTTTATCAATCATACCATGTTTGGAAAAATCATAAAACATTGTTTACAAACACAGTTTCTAAGCATAGATTTAGAAATTATTTGGATTTTAGAAATGTTGGAGGGATTCTGCACCGTTGTTTGCTTCAAAAGTTGAACTTTATGCATGTTTATTGACATTTTTTGGTGTTTAGCTTTTGGGCTTATGTCTCTAACCCTCTTATGGAGCTTGGGGTAGGGTTGGTTGTTTTTTGTTGGATGAGGTGCTTTTGAATTCCTCTGTGGCTTCATAGCTCTAGGATGGTCTAATCAATTGATCTTTCTTTTACTCCCTAATGAATCTTAATGGCAACGGAGCTGCAGGAACCACTTTCTTCTTTAGAAGCTGAATATAAATCCGGAAGTCCCATTTTGCTGGAGAAAATTAAGGTTTTATTTATTGCCTTTATTCTATTGTTATTTTTGGGAGAGTAGTTTTTCTTAGAATATATTTAAATTACATGTTATGCAGGTGCTCAGTGGCCAATATGCTGCCATTCGTCGAACACGCGGTGATGGGAATTGCTTTCTCCGCAGCTTCATGTTTTCTTATCTTGTAAGTCTAAACACTTTTAATGTATCTCAGCAGATTGGTTATTGTACTTTTGGTGCATCATCGGACTTCAGCTGCTACTGACTTGGCCTCTCTAACCAGGAACATATTTTAGAGTCGCAAGACACCGCTGAAGTTGATCGGATCAAAATAAATGTGGAAAATTGTAGGAAAACACTTCGAAGTCTGGGATATACAGAAATTACTTTCGAAGATTTTTTTGAGGTAAATTGTTTCTATGCCCATGTTTTAAAAAATTAGTTTATTATTTGAATGTCTATCCCTGCTATAAGCAATATTGACTTATTTCTCCCATTTAACTCAAGTCGATGGAAGTTTAGAATCAACTGTTCTTACAATCTCAAAATGTGCTATCGAACATACCAGATAGAAATAGTGCTACATCAATTTTATTGTTGCCGAGATGTTGTCCTTGCAATTTGTGATGACTGAGGATGTTTTTAATAATTAATTCATTATGCCTCTATCTCATAGTTCATGCTAATTCTTAATTTGAACATTTTATGTATCGAGTGCTTCACCTCATTGAAGTCGTCCCCACTTCGTTTTGTGCCTTGCACATGAACCCTAAAGAGCTGTTCTGTTTCATCGTGCTTCCTACTTTTAAAAACATTGTCCTGAATTTATACCACCTGAAAGAATTGAGATGTCTAGACTCATCCTTATTTATTATTGTTGTCTTTATTTCCTTTCGGTATAAACTAGCTAAATATCCTTCGTTAATGGTGGTTGCCTTAAATATAATTTCTGATTAATAGGTATGTTTAAAATATCTTTTCAGCTATTCCTTGAGCAGCTGGAAAGTGCTCTTCAAGGAAATGAAAATTCTATAAGGTGTCAATGACCTGCCCTTCTACCTTGGAATTTCAATTCTCGAATTTTATTTTATAGTGGAATATTCTGTTGCTTTCAGCTGTGAAATCGGTCATTCATGATTACATTTGACTCTTAGTTTTCTTGAATGCAGTCATGATGAACTTGTTCTTAGGAGTCGAGACCAATCCATCTCTGATTATGGTCGGTGATGTTTGTAAATTCAATATTCAGTTGCCTCGCTCTTTCTGTTTCTTCTGACAAATTTGTTTTGCTAGTTGTTATGTTTTTCAGGTTTGTTACATCAGGTGAAATTCAAAAGCGTTCAGAATTTTTTGAGCCTTTTATTATGGGATTGACACATGGAACGGTTGATCAGGTTTCTTAAATTTGTAAAACTTCAAACAAGTTTTACATTATTTGTTGGCCTTTATTATTTAGATTTATGTCGCAAATTGGACCATACAAATTATGTTGAAACCTAAGTTGATTGGTTTGGGTAGCGAGTTTTAAGTGTAGTTTCTAGCAGAAACAGATTATACTTAGTATGCAATAATGATGATTTAGATCATGTTACCTTGGACAGGAATAATATTGGATCTTTCACATTCCCTTGTTGTTTGTTTACTTCGAGTGGGGAATAGAATAAGTGCAACCCACTTAAAAATGAAGATTCATGTTCGTATTTTGGAGAAGCATCATTACATCATAAATGATTATCAATCGCCTACTCCTATTCTCTGGGTCCAATTTTTTTTTTAAAAAAATCTCTACCATTTTGTGGGTCCTACATATATTGAACTTCTGACTCATTCTAAGAATCTAATTGCCAACAAACAATATCTACCACAATTTTCTTTTTCCTGATCCAGATTTAATTTTAGTAAACAAAACCACCTTGAGTAACCTATTTGTCGATAAAGGCTATGTAAATAAAAAAGAGTGCAAAGGGTATGGGTTCAAGGCTTCAAGCCATGGTAACACCTACCCAGGTTTTAATTTCCTGTGAATTGCTTTGCTATCTAATGCAGTAGGGTAGACAGTTGTCCTGTAAGAATAGTTGAGGTGTGTAAAAATTGATCCAAACATTTATGGATTTAAAAAAAATATTCTGTCCAATTAGTCAGGATTTTGGTTCACTGTTTGTTTGCATTAAATATACAAGACCTTAGGTCCATTGTTTTATCTGGATTAAAATGAGATTGCTTTGGTCTTATTATCCCATATTTTTGTGCATTAGAATCCTTTTATTCTCTTATTTAAGAAGATAGAATAACCTTTATATCATGATTTTCAATCTCGTTCTCATTTTATCTTTTCTGGCACAGTTCTGCAAATCAGCAGTTGAACCAATGGGTGAAGAGAGTGATCATGTACACATAATTGCGTTATCTGATGCATTGGGTGTGCCAATCCGTGTTCTGTACCTCGATCGGAGCTCTTGTGATTCTGGTGGCATCAGTGTAAATCACCATGATTTTGTTCCTGCTTCTAGTGATGTCTCAGGTGTTAGTGTTGGCTCTGAGATAAAGATCCCTTTCATTACTTTGCTCTATCGTCCTGGTCACTATGATATTCTCTATCCAAAGTGATGCACATTGGTAAGCTTTTCTCTTGAACTTCTTCGAAAAATTCAGTCACAGAAATGTCTCTTCCTGCCCACCTTTTATATTGCAAGAGATTAACTGTATAGTCTGTATATATAAAATGATGATGTTTTAACAGTGTATTACTGCTACATCCTCATTCATCATGCAAAATGATATTTCCATTCGTAGTTGTCTACTATTATTTGCAAATATGTTTGAAGTCTTTGATTTACTTGGGATTTTATAGGATTACTGAAGGATTTTTTCTGGGTTCATCTTAAGTTTAATGTCATGTATTTCAGGCCACTGGCGAACCCAGGTGGGGCTCTCAAAGATGAACTGCATTGGCACGGCAAACATGGATCCAAAGTTTCGATGA ATGCAGAATCAGGAAAATCTTGATGCTGATGGGAAAGTGGAGTCTGTGATATCAATTCAAACACCAGACTATGATAGTTGGGACACTTTTGGTGACGATGAAATCATGCAGCAGAAATCTGCAATTTTTGTTCAGGAGGCTGAGAAAGTTCCATTTGTTGGTGACAAGGAACCACTTTCTTCTTTAGAAGCTGAATATAAATCCGGAAGTCCCATTTTGCTGGAGAAAATTAAGGTGCTCAGTGGCCAATATGCTGCCATTCGTCGAACACGCGGTGATGGGAATTGCTTTCTCCGCAGCTTCATGTTTTCTTATCTTGAACATATTTTAGAGTCGCAAGACACCGCTGAAGTTGATCGGATCAAAATAAATGTGGAAAATTGTAGGAAAACACTTCGAAGTCTGGGATATACAGAAATTACTTTCGAAGATTTTTTTGAGCTATTCCTTGAGCAGCTGGAAAGTGCTCTTCAAGGAAATGAAAATTCTATAAGTCATGATGAACTTGTTCTTAGGAGTCGAGACCAATCCATCTCTGATTATGTTGTTATGTTTTTCAGGTTTGTTACATCAGGTGAAATTCAAAAGCGTTCAGAATTTTTTGAGCCTTTTATTATGGGATTGACACATGGAACGGTTGATCAGTTCTGCAAATCAGCAGTTGAACCAATGGGTGAAGAGAGTGATCATGTACACATAATTGCGTTATCTGATGCATTGGGTGTGCCAATCCGTGTTCTGTACCTCGATCGGAGCTCTTGTGATTCTGGTGGCATCAGTGTAAATCACCATGATTTTGTTCCTGCTTCTAGTGATGTCTCAGTGATGCACATTGGCCACTGGCGAACCCAGGTGGGGCTCTCAAAGATGAACTGCATTGGCACGGCAAACATGGATCCAAAGTTTCGATGA ATGCAGAATCAGGAAAATCTTGATGCTGATGGGAAAGTGGAGTCTGTGATATCAATTCAAACACCAGACTATGATAGTTGGGACACTTTTGGTGACGATGAAATCATGCAGCAGAAATCTGCAATTTTTGTTCAGGAGGCTGAGAAAGTTCCATTTGTTGGTGACAAGGAACCACTTTCTTCTTTAGAAGCTGAATATAAATCCGGAAGTCCCATTTTGCTGGAGAAAATTAAGGTGCTCAGTGGCCAATATGCTGCCATTCGTCGAACACGCGGTGATGGGAATTGCTTTCTCCGCAGCTTCATGTTTTCTTATCTTGAACATATTTTAGAGTCGCAAGACACCGCTGAAGTTGATCGGATCAAAATAAATGTGGAAAATTGTAGGAAAACACTTCGAAGTCTGGGATATACAGAAATTACTTTCGAAGATTTTTTTGAGCTATTCCTTGAGCAGCTGGAAAGTGCTCTTCAAGGAAATGAAAATTCTATAAGTCATGATGAACTTGTTCTTAGGAGTCGAGACCAATCCATCTCTGATTATGTTGTTATGTTTTTCAGGTTTGTTACATCAGGTGAAATTCAAAAGCGTTCAGAATTTTTTGAGCCTTTTATTATGGGATTGACACATGGAACGGTTGATCAGTTCTGCAAATCAGCAGTTGAACCAATGGGTGAAGAGAGTGATCATGTACACATAATTGCGTTATCTGATGCATTGGGTGTGCCAATCCGTGTTCTGTACCTCGATCGGAGCTCTTGTGATTCTGGTGGCATCAGTGTAAATCACCATGATTTTGTTCCTGCTTCTAGTGATGTCTCAGTGATGCACATTGGCCACTGGCGAACCCAGGTGGGGCTCTCAAAGATGAACTGCATTGGCACGGCAAACATGGATCCAAAGTTTCGATGA MQNQENLDADGKVESVISIQTPDYDSWDTFGDDEIMQQKSAIFVQEAEKVPFVGDKEPLSSLEAEYKSGSPILLEKIKVLSGQYAAIRRTRGDGNCFLRSFMFSYLEHILESQDTAEVDRIKINVENCRKTLRSLGYTEITFEDFFELFLEQLESALQGNENSISHDELVLRSRDQSISDYVVMFFRFVTSGEIQKRSEFFEPFIMGLTHGTVDQFCKSAVEPMGEESDHVHIIALSDALGVPIRVLYLDRSSCDSGGISVNHHDFVPASSDVSVMHIGHWRTQVGLSKMNCIGTANMDPKFR Homology
BLAST of Csor.00g250390 vs. ExPASy Swiss-Prot
Match: Q8LG98 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1 OS=Arabidopsis thaliana OX=3702 GN=OTU1 PE=1 SV=2) HSP 1 Score: 380.9 bits (977), Expect = 1.3e-104 Identity = 189/268 (70.52%), Postives = 222/268 (82.84%), Query Frame = 0
BLAST of Csor.00g250390 vs. ExPASy Swiss-Prot
Match: Q96FW1 (Ubiquitin thioesterase OTUB1 OS=Homo sapiens OX=9606 GN=OTUB1 PE=1 SV=2) HSP 1 Score: 169.9 bits (429), Expect = 4.6e-41 Identity = 104/244 (42.62%), Postives = 144/244 (59.02%), Query Frame = 0
BLAST of Csor.00g250390 vs. ExPASy Swiss-Prot
Match: Q7TQI3 (Ubiquitin thioesterase OTUB1 OS=Mus musculus OX=10090 GN=Otub1 PE=1 SV=2) HSP 1 Score: 169.9 bits (429), Expect = 4.6e-41 Identity = 104/244 (42.62%), Postives = 144/244 (59.02%), Query Frame = 0
BLAST of Csor.00g250390 vs. ExPASy Swiss-Prot
Match: B2RYG6 (Ubiquitin thioesterase OTUB1 OS=Rattus norvegicus OX=10116 GN=Otub1 PE=1 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 4.6e-41 Identity = 104/244 (42.62%), Postives = 144/244 (59.02%), Query Frame = 0
BLAST of Csor.00g250390 vs. ExPASy Swiss-Prot
Match: Q9VL00 (Ubiquitin thioesterase otubain-like OS=Drosophila melanogaster OX=7227 GN=CG4968 PE=2 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 1.0e-40 Identity = 105/255 (41.18%), Postives = 149/255 (58.43%), Query Frame = 0
BLAST of Csor.00g250390 vs. NCBI nr
Match: KAG6597694.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 605 bits (1561), Expect = 2.01e-218 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0
BLAST of Csor.00g250390 vs. NCBI nr
Match: XP_022932663.1 (ubiquitin thioesterase otubain-like isoform X1 [Cucurbita moschata] >XP_022932664.1 ubiquitin thioesterase otubain-like isoform X1 [Cucurbita moschata] >XP_022932665.1 ubiquitin thioesterase otubain-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 541 bits (1394), Expect = 5.50e-193 Identity = 274/279 (98.21%), Postives = 276/279 (98.92%), Query Frame = 0
BLAST of Csor.00g250390 vs. NCBI nr
Match: KAG7029138.1 (Ubiquitin thioesterase otubain-like protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 541 bits (1394), Expect = 5.50e-193 Identity = 273/279 (97.85%), Postives = 277/279 (99.28%), Query Frame = 0
BLAST of Csor.00g250390 vs. NCBI nr
Match: XP_023539139.1 (ubiquitin thioesterase otubain-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023539140.1 ubiquitin thioesterase otubain-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 540 bits (1390), Expect = 2.24e-192 Identity = 272/279 (97.49%), Postives = 277/279 (99.28%), Query Frame = 0
BLAST of Csor.00g250390 vs. NCBI nr
Match: XP_022972221.1 (ubiquitin thioesterase otubain-like isoform X1 [Cucurbita maxima] >XP_022972222.1 ubiquitin thioesterase otubain-like isoform X1 [Cucurbita maxima] >XP_022972223.1 ubiquitin thioesterase otubain-like isoform X1 [Cucurbita maxima] >XP_022972224.1 ubiquitin thioesterase otubain-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 536 bits (1382), Expect = 3.71e-191 Identity = 273/279 (97.85%), Postives = 273/279 (97.85%), Query Frame = 0
BLAST of Csor.00g250390 vs. ExPASy TrEMBL
Match: A0A6J1F2S9 (Ubiquitin thioesterase OS=Cucurbita moschata OX=3662 GN=LOC111439146 PE=3 SV=1) HSP 1 Score: 541 bits (1394), Expect = 2.66e-193 Identity = 274/279 (98.21%), Postives = 276/279 (98.92%), Query Frame = 0
BLAST of Csor.00g250390 vs. ExPASy TrEMBL
Match: A0A6J1I9A3 (Ubiquitin thioesterase OS=Cucurbita maxima OX=3661 GN=LOC111470817 PE=3 SV=1) HSP 1 Score: 536 bits (1382), Expect = 1.79e-191 Identity = 273/279 (97.85%), Postives = 273/279 (97.85%), Query Frame = 0
BLAST of Csor.00g250390 vs. ExPASy TrEMBL
Match: A0A6J1CXW6 (Ubiquitin thioesterase OS=Momordica charantia OX=3673 GN=LOC111015206 PE=3 SV=1) HSP 1 Score: 505 bits (1300), Expect = 5.58e-179 Identity = 252/274 (91.97%), Postives = 264/274 (96.35%), Query Frame = 0
BLAST of Csor.00g250390 vs. ExPASy TrEMBL
Match: A0A1S3BZ50 (Ubiquitin thioesterase OS=Cucumis melo OX=3656 GN=LOC103494633 PE=3 SV=1) HSP 1 Score: 499 bits (1286), Expect = 7.57e-177 Identity = 250/274 (91.24%), Postives = 261/274 (95.26%), Query Frame = 0
BLAST of Csor.00g250390 vs. ExPASy TrEMBL
Match: A0A0A0KX37 (Ubiquitin thioesterase OS=Cucumis sativus OX=3659 GN=Csa_4G007720 PE=3 SV=1) HSP 1 Score: 499 bits (1286), Expect = 7.57e-177 Identity = 250/274 (91.24%), Postives = 262/274 (95.62%), Query Frame = 0
BLAST of Csor.00g250390 vs. TAIR 10
Match: AT1G28120.1 (CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). ) HSP 1 Score: 380.9 bits (977), Expect = 9.2e-106 Identity = 189/268 (70.52%), Postives = 222/268 (82.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|