Csor.00g250150 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g250150
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 65 kDa protein
LocationCsor_Chr06: 11474296 .. 11483716 (+)
RNA-Seq ExpressionCsor.00g250150
SyntenyCsor.00g250150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGCTGCCATCAAAGATTGCACGCCTAAGGACCACAGGATTAAAGATCATACTGAGGGTATGAGAGCAAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTGGAGTACGGTGCTCTTACCACTATTTATTGTTTTCATCTTACATTATAATTTGTAATGTATTGTTATGTATGCTAGGTCTACAAATTCTTTAAGATTGATAGTTGAAATTGATGATTCTTTAATGTTTCATTTTCTTGAAAACGCAAGTTGTTCTGTAAGTTCTAAACTGTCGAACTTTTGTATTTAAGTTTTGAGCATCTACACAATTCGACATACTCTAGTTTAAACGAGCCTCACAAAAGGTACTGAATCAACATTATAGGAGTACTAAATCAACATTTAATGAGAATGACATAGATCAGTTCTGTAAGTCGTAGGTCCAAAAACGGTGATATAGTTCTTCTCTTTAGAGATGTAATTTAGACAATTCTGTGGCACTAGCCTATATGTCTATAAAAGATTTGTCTAAATCAAATGTGGAGAAAATGAAAGTCTTTGCGATTATGTGGATGATGTTCTTGAATACTTGCACACAAAAATAGGTTAATCAGACAATTCCAACAATCCAAAGAGAAAATATATACAATCCTTAAACGGAAAAGGTACGGATATTCTTTGGATACCTTCTGCACTGCATCACCTGTTGTTGTGTTGATTCGATTCATTTTCTTCAAAATACTGTAGGTTCTTGATTACCCACTGTTATTGATCTGATTGAAATTGTTTGTTCTTTACCAAGTTTCTATGGAGACAATTGTATTTGGTTGTACATTTGTTAAAATTTGGTAAACACTTTTTTAGGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGCTGTCCCACGCTTTTATACACAGGTTGTTGTTTACAAATGAAATGGTAATTTATATGTTTTAAAGAGAAATTTAAAACTTATATGCTTAAAGTGAAGTTCAATTTTGAATGTTGCCTCTCGTGACCTCCTGAGGTTTTTTTGGTGACTTTTCTCAGTAGTTGTTGCTAGTGCTCCTTGCTCATGTTGGTTGCTGGTCTTCTTCCTAGAAAAATAGAAACAAAACCTTCTCTTGTGGTTTTGGTCCAAGGAAGAAAGGTAGACAATGTAGGATTAAGGAATCTCATTTAAAATAAAAGGTTTGAGTTAGTTCTTGAGGAAGTTATGATTGTTTGGCTAACTAACTCCCTTGAGTATCTGCTGTTGCTTGCCCTGCACTCTCCAAAGTTCTATTGAAAGGTTGACTGTTGTGATGGGTTTATTTGGACTCAAAAGATTACAAACAAAAGAGGTTCCTTTCTTGAGATCATCAAGGTTTATAGATTGGGAGGTAAGAGAAATCTTGTTGTTCCTTCTAATAGAGATTAGATGGTTGGAAGTCCTTCCAGGAACTTCTTATAGAGTTTTTGGATGAAACATGAAAACCAAATGAGAAGCCAAAGAAACTCCCGAATAAAACCCTCATGGAAGGGAAGTGCGAAGGCTCCTCCTTTGAAGAGGTGTTGAAAAATGAACCAATGAATCTTGTTGTTCCTTCTGATAGAGATTAGATGGTTGGAAGTCCTGCAAGGAACTTCTTATAGAGATTTTGAATGAAACATGAAAACCAAATTAGAAGCCAAAGAAGCTCTCAAATAAAACCCTCATGGAAGGGAAGTGTGAAGGCTCCTCCTTTGCAGAGGTGTTGAAAAATAAACCAATAAGGAGAAAAAGATTCCTCAAAGTATGTTAGAGGAGGAGGGTTTTAGTCTTGTAGAAGCGGATAAGAAGGAAGTTACATTTTTTAAATGGGTTAAACCGTTGGTTATTACCAGAAGAGACTTCCACGATGATTGGGCAAAATTTTTGGAAACCCTTGACAAGCAGCCGGAGGAATCTTTCACTGTTAATCTTTTCTTCCCTGATAAAGCCCTTTTGTTGTGCCCCTTGACAAAGTGTACAAGGCTACTAGCTACGATTGTAAGGGGGGTTACATTAGGAGCCTTTACAATGAAGTTAGAAAGACAGGTCCCTTGGGAGAACGAGAGAACTACAAGGGTCCCCTCTTACAGGGGTTGGATAAAATTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCCTTGCATTTATGGAGCCTAGCCACGTTCAAGGCGATAATTGATTGCTTTGAGGGGATTTTGTGGACTATGCAAATCAAAGCTCTTCCCTCATTGAATGCTTAGAAGTTGCAATTGAAGTGCAAGGAATTACTGTGGATTCATCCCCCAATGAAGTGAAAATCCTTGATAGAGAACAAGTGTCTTCCTCCCAGATGATTGTGCTCCAAGATGGCTGGTTGTTGGCCTAAAAGAAAGTTGAAGTTCACAGTGGACTTTAGTCTGAAGCAGCCACAAGGTTCCATGACAATGACATGAGATCCGGTTCTAATCTGATAGATTTGTGGAGGTTAAGGGACAGATTTTTTTTTTTTACTCATCAGTAACTAGTTTTTACCCGAATATTCCAATGTTGCAGGGAGAGGTTTCAGTCTTCTACCTAAATTTGAATCACATGTTCGAGAAGATTGACGGTGGACCCCACACGGTTGATCGTAGCCTTCGCTCAAGCTCCACACGAATACAGACTCCCCTGTCAAGTCAAAGTAACAGTGGTCCTTTGCATCAGGGAGACATTCCAAATTTCCCTCTAATTTCAGGGGGAAAGGGAAAATTAGTCAAATTTGTGGAAGATTTAGAGAAGGGTCGTGGAAAAGTCTTTTTTTTTTTTTTTTTACAAGGGGAAAATTTTCTCTACAAGCAATACCAAGGCTAAGCTTTGCAATAAAAATTTGATGATGAAAAAGATGTGGTAAAGGAAAACGAAAGAGGGGTAGAGGATTATGTAGAGATCCTTGAGAATTTTCAGCTTTGTTTTCAAGAAAATGAAGCTTTCCCTTTATCTTTAGAAGTGGATACAACCTTGGCTATTGAGAAAAGAAAAGATGGGAATGATGGTACTATAATGAAAGTAGATCACGTAGAGGAAACTCAAGAGGAGAGGAAAAGGAAAAAAGTCAAAAGGGTTGGTGGAGTTATGTTCCTTCACCGTTTAGCAGAAGTCTGGTTAAAGCTTTGAAAAGATGGAAATTGTGTATATTCCTAGAAGAGGCAATCCAATGGGCAAGAAGAACGTTAGATAGTTGAATGGCATTTTGAGAACATTGGGAGAACGAACCAGAGGAAGTAGATGAAGGGGTTTGTCTCACGAAGATAGTCTTATGGAACGTTAGAGGCCTTGGTGCTCTCTCCAAAAAGTGCTTGTTAAGGAGTTTTTAGTTAAAATTAGTCTGGATGTTGTGGTTCAATTTGGTCGAATGTTACTTGATGTTTCTTATTAAAAAAAAAAAAAAAAAAAAAAACTTGTATGTTTAACCTATGGAAGCACATTTGAAGTAAATACTCACAACTTCTTTTTTTAATTGTAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCACTCACAACTTATTTTTTTAATTGTAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCTGCACCACCGTCATCCCTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATGTGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGTAACTTGCCTAGATTGATAAATGTAGGTTGCGCATATTTGGTTCACTTTAAGTACATAGATGCATTTGTGCACTCATGGTTTGTTGGTGGAATGCGGTTATTTTGAAGATTTTGGAGGATGCTGGGCAGTGTATTTAGATACTTACCTCTTTGTTGCTTTGAATTTTATTTTCCTTGGTACACCACACAATTTACTTTATGAAAAGATTGAATAGAAAGGCATTTTCCGTGAAAACTTAAGCAGTGATATAGGAGTAATTTTTTTGTTTTTTCCCTGATTAAGTATAATCTGCAGAAAACTCTCACCTTGTTGAGCAAGATAATCTAATGTAAGGATAGCCTGGTTAAATGAAAGGTTTGGCACCAGACTCTTAGTATGAAGACTAACTACCATCAAAGGTCCAATTTAGCATCTTCCCTATTCTCTCAAGTGCTAAATTCGTGAGCAGCTCGCTAGGGATGGCCATTCCTCCATAACAGCATCAGAAAAGTTTCTCCCATATTTGTGATTCCATCCTCTCAAAGGATTGGTCCAACATTGACAAATAAGGGAGCCCTTGGCGTTTGCAATGCTAAAGACAGTTGAAAAGGCCAAGTGGGGAGGAGCATTGATAAGCCAGGGATCCTCCCAAAATAGAACTTTATCTCCATTACCTACAGCCACCTCTTAACACGTATTGGCCAAGTTACAATAAGAAGTAGAGACCTAGGGACTGAAGTTGAATGGACATTTAGAAGAAGGGTTCCATTCTTCAAATGAGAGTGGTGAGACTGGTGTTTTGTTGAAGTTGTTACCTACAATCTTTAGTTGCATCCCGTTTATTTTTTTTCTTTTTGGTAAAAATACTTTCCTTTGTCCTTGTCTTCTTAGTTCTCCTGTATTGTTTGATTTTTATTCTATTCATTTTTTTACTACTTTAAGAAGGTATCTTTCCTTATTTTATGAGGCCTGATATAATAATCTACTCCCTTTTGTCTTGGCTTACTGATTAATTGGATATAAATGTGCATTAGGATGTGGAAGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGGTTGCTTTTATCATTAGATATAGCTAATTGGCATATGCTTTATTTATATGATTCATCAAATTCACTTGTTTAGTTGTTGCAGTTTAAAATTGCCCCTAAGGTGGTTCATGACGGAAAGCAGGAAGGAAAGGAGGATGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGGTACTTTACCATGTGATATTTTAATGCTCAAGTATGAAACTACTACATGTTATTCGTACATTCATTTATTTAAGCTCCATTTCTTGTATATGTTTTAACAAATTATTTAGTGAGGGAAAAAAAAGTGCTTTTGAAGATGGTTAAACATTTTTCTTAAATAAAAACTTACCACATATGCTTATAAAAAAGGCTTACTGCATAAGAAATTTGACCATGATTTGGTTCCTATTGGTTTTAAATTCAGAATTTCGACAAAGGTAGTTCTAAGACGTTTTGCTTTTGTTTTCTTGGACAATCATGGGCATCTTGTTCCTTGGGGTGTGCAACCTTATTTTCTTGTGAAATATTTGGCTGGAGAGAGATAGGAGGATTTTTAGAAGGGTTGTGTGTCAGTAGAGACTAGAGAGGTATGGTCCACGATTAGATTTAATGACTCTCTTTGGGTGTCAATGACCAAATGGGTTTGGTATTGCTCTTTTGTCTCTTGTTAGCAAAGTTGTGAATTTCTAGATGCGGATATTTTAAGTTTCTGCTTTGTTGACAGCATTTTGGATATCGATGTTCCTTCTTTTGTAGATGCTTGTTGGGTTGGCCAGTGGTCAATAAAGGTTATGAGAATAATTAAGGGTTTAGAGGGAAGGAGTTCAATAAATTTTCTTTTCTTTGTTTTAATAAATTTGTCTTTCATTTCCCTGGTTTAGGGTTGGGTATATATAAGCTACCTTTTCTTTTAATTTACCATTTGAGTATGATATAAAAATAATGTTGGAAATTTCATGGATATTGCAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGTAAGTTTCTTTGCCCCAATTCAGCCTGTGTGCATATATGGAAACACACGGCACTATTTTTTCACTATTTGTTATTTTTGTTATTTTCTCATGAACTGATTGATATTAAGGAATCTTGGGTAGGGGTTCAAATATGAAGCAAAGTCGTGAGATGGCAAGAGGATTGGGGGAATTTGGGATGTACTCCGTGTGAATAATTTTTGACGTATTTATGGATGAAAACTCCCCCTTTGACCTCTTACTGTGATGCCCCTTGAAACGGGTGATGTATTATGACAATAAAAGGCAAACAAGCTAAGGGCTAGGGGTTGAGAATACCCCTGCCCAAACTCCTACAAAAGAGCCTTTCCATTGTTAATAATCACGAGGTTGTGATTACAAAAGTACTTCTTGTGGTTTGAGCAGACCAAGAGATTTTATGCTGCATAGAATTATAAAAATAATCCACCAGAGTCGACTTGTCTTTGGAAATTCTTTTGTGTCACTCTTTCCAAATAAGTCAAAGGCCTTTTAAGAAGTTATGTTAAAAGTTTTCTAGAAGCCAAGAATCGACACAATCAGGGAGACAATATGCCATACCAGATTCATTCAAAATGAAACATCAGGCCTTCTGAGCATAAAAGCACTGAATGAAGATGTGATTGAAGGTCTCATTTTCATTATAGCACAAACACTCGACTGTAAGAGGTAAACTTTGGTGTTAAGGCTTTTTGTACACCGAAGTCTGAATAAAAAAAATTTAATTTTCTTTGGTATCTTGAACTTTCATATGTAGTGTTCACCAAAGGAGTTCTTTGGTGAGATGAAGGAAGATGGATTTCACATAACAAAAGCCATTTGGATCTAACTTCCGCCAGATTCTGTCTTTGGCCCCTAGATAGCTGGACCTCATCTAGTTTTTCCGAAAAATCGTCCCAGCTAGCCACCCCTGTATTGAACATTCAAACAGACACCAAGAGTTTGTGAAAAGAAGTTTTCTTATGTTCGATAAAATTATGCCTCTGACCTTTTGGTTACATGAATATATCGAGATGTAAATCTGAGATTTCATAAATGGGCATCTATACTATTATGTTACTGCCACCTCATTTGTAATCCTTGGATAGGCCTATATATTTGTCTTTTTTAAGACAACAATTGCAATGATCTATCCCGATCACCCTATATATTTGTTTTTTGAATTCATCTTTTCAATGGGAGGTTTTAAATATGTTGCTTTTAAATTGTATTTTGTAGGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACTGTGAAGCTAATGCAGGTTAGGTATTGTTGTCAGATGTGTACGTTTAGATAAGAATTTTTTGGATAACCGAGAACTATAATTTCTTCCCTGATTACTTGAAGCACATCTATAAAGTTGTCAGATGTCTACAGTTTGATAAAAAGCAACACCTGCAAAGTTGTCTCATTCTCTGAGTTGGGGAGATAAGAGTATGTATAATGTGCTTTATTGTTAGGCATCGGCTTTTACAAAGATAAATAAGCATAAATAAAGCAAGTCTTAGAAAAAGCATTGTGTCGTAGATGACCTAAAGATGCGGTTCTCAATATTGCAATAATGCATAGTGTTGTCAACTCCTCTCTACCATTTAAATGCGACCCTGGTCACTATTTTTAAAGGGTGAAAGGCCACAGCTTAGCCATTAAAAGTCACAATATATAGAAAGTAGTAAAACCATATATTAAAGTTCCAATATTAAGCATGGAACACTAAGAATAAAGGGTTAAGTATTTGAAGACAACAAATCTTATCAATCTCTTGGATTGGATCCCTTTTGTAGCTAGTGTTGGGACTCCTGTTTGTGGGTGTGTTTTTTTTGTATACCCTTGTATATTTCTTCATTTTTCTCAGTGAAAGCTCGGTTTCTTATAAAAAAAACAATTATATCAGTCTTGCTAACCATGTTGGGAACATTTCTCTTCAAGTTTGATGCTGAGGAAGGTAGAAATCAATTATAACATGACCTTTTATCAAGTGAATAGAGAAATTGTATCTAAACAAAGTATCTAAAGAAAGTATCTAAATGCTGCAAGCAACAAACCACGGAAAGCTTAGAAAAAAATAATCAGATTAAACTCGGACTAGGATAACAATTGTTCAAAAGAATACAACCTATATTATCAAATAAGAGCTTACTTACCTCATAATCCAACTACTTGGATGTCTAGCGTGGCTTCAATGTTTTTTCTTATTAAATTTCTTGAAAGACAAGCAGAAAGTAATTATTGGCCGTCCAAGTGTATTTAATTATGACTTGGGGTTCTGAAGTTTCCTTATTTTGAATTTCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACATGCTTTGGTTAGTAGTAAAATTCAGTATTTGGTTTACACCAGGGTTATTTTTGAATTAATAGCAATAAGATAAAAGAAAGCTAGAGGCATGAAGCTATGGTGTAGAAAATCACTAGTTCACTTGACACCATAAAAGCGACTCTGTTACAAAGGCTTAATTGTTTGTTCGTTAATATTTTGTGCAACTTAAGTTCTATGCTTGCTGGCTCATAGTTGGTACAAAAGCTTACCTTCGCTGGTGATTTATATTTATTCACTAGGAAGGGTTAATGGCAGTTGCTCTTTATTTATTTATTATTATAATTTTTTGTAAAATCTCTTTGTTACCTTTGTTTTCTTCCGAATAAATATGATATATGCATCTAGAGTTTATGTATGGGAATGTCTGGGTGAAAAACCACCCGAAAAACTACCCAGCCATTCCAGGGGGCTGGTATCTCTCCCTTATTTTAGAACCTCAGCAAAATGCTAACTTCCCTACTCCTGTACTCATATGACACGCACAAGATAAATAACTGTCAGACTCAACTTTTCCCATATTACCTCTCCTAAGATATGTTTTCACAATTGGTGGCCTTGCAAAATACTGCTAAGACTTCTCTTTTGGATGCCCTTCGGCTTGAAATACTATAGAATTGTTATTTCAAATACCTGAAGGTTGTAGTGTTATTTGTGGTTGCGTTTTTGGTTTGTTCTATTCTTCCTGTAGGAGTAAACTGATTTACATGTCTAAGATGCCACATTTATCGTTTTGACAGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCTGCCAAGGGAGTTAAAGTCGGCTCCTAG

mRNA sequence

ATGGATGATGCTGCCATCAAAGATTGCACGCCTAAGGACCACAGGATTAAAGATCATACTGAGGGTATGAGAGCAAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTGGAGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGCTGTCCCACGCTTTTATACACAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCTGCACCACCGTCATCCCTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATGTGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAAGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGTTTAAAATTGCCCCTAAGGTGGTTCATGACGGAAAGCAGGAAGGAAAGGAGGATGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACATGCTTTGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCTGCCAAGGGAGTTAAAGTCGGCTCCTAG

Coding sequence (CDS)

ATGGATGATGCTGCCATCAAAGATTGCACGCCTAAGGACCACAGGATTAAAGATCATACTGAGGGTATGAGAGCAAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTGGAGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGCTGTCCCACGCTTTTATACACAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCTGCACCACCGTCATCCCTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATGTGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAAGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGTTTAAAATTGCCCCTAAGGTGGTTCATGACGGAAAGCAGGAAGGAAAGGAGGATGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACATGCTTTGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCTGCCAAGGGAGTTAAAGTCGGCTCCTAG

Protein sequence

MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS
Homology
[Close]
BLAST of Csor.00g250150 vs. ExPASy Swiss-Prot
Match: Q8RWV8 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP65 PE=1 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 1.2e-101
Identity = 202/330 (61.21%), Postives = 243/330 (73.64%), Query Frame = 0 

Query: 31  GEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 90
           GEPIA +LG+DYPFPPHL+YAYPPPD NIL NI NALIAVP  YTQVLHLMNKMN+P PF
Sbjct: 139 GEPIAPKLGIDYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMNLPPPF 198

Query: 91  RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSG 150
           RL LPTPPLP + P                 +  + + SS ESEMES E+          
Sbjct: 199 RLALPTPPLPKAGP----------------QQTDLEHQSSSESEMESDED---------- 258

Query: 151 VSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPK 210
              T++SG KR+R   +VG G+DKDV HETVGVKPS+L PKEIP I+K   V Q KI  K
Sbjct: 259 -IGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHVMQIKITSK 318

Query: 211 VVHDGKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGS 270
           V  D  +E  E++  +  +E +++ ++LK +A+LE+LE+G+LPP++ILSLPMFKNYTAG+
Sbjct: 319 VTQDEYKEESENE--DPADEPKEKDSNLKPFASLEELEKGRLPPQDILSLPMFKNYTAGN 378

Query: 271 PTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVEL 330
           P+ VLYIKNLAKDVV DD YYIFGS F   + AKS+L V+LMQEGRMRGQAF+T PSVE+
Sbjct: 379 PSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEV 438

Query: 331 AQHALNLVNGYVFKGKPMIIQFGRNPGAAK 361
           A  ALNLVNG+VFKGKPMIIQFGR PGAAK
Sbjct: 439 AHRALNLVNGFVFKGKPMIIQFGRTPGAAK 439

[Close]
BLAST of Csor.00g250150 vs. ExPASy Swiss-Prot
Match: F1Q8J0 (RNA-binding region-containing protein 3 OS=Danio rerio OX=7955 GN=rnpc3 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.7e-38
Identity = 136/399 (34.09%), Postives = 202/399 (50.63%), Query Frame = 0 

Query: 1   MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           + D  + D T      K+  E  +         IA  LG+ +   P L+Y YPPP   IL
Sbjct: 97  LKDPPVSDRTAAAVAEKEKKEKQQPSVPLMDTSIAPSLGLKFQTNPTLKYLYPPPSSGIL 156

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120
           TNI + L++VP+FY QVLHLMNKMN+P+PFR P+  PP    +P+ P     PP PP   
Sbjct: 157 TNITHTLLSVPKFYVQVLHLMNKMNLPSPFR-PVTAPPPMFEMPSGPLP---PPFPPENP 216

Query: 121 PRPQ-ITNVSSDESEMES-SEEDVEGKYNSSGVSK-------TARSGNKRSRCEAIVGPG 180
           P P+   + S +ESE ES  EE+ E      G+           ++ +KR + +      
Sbjct: 217 PLPEHDESGSEEESEYESEDEEERERMIRLMGLVNQPCKRPLRTKTSSKRKKPKLKDLLF 276

Query: 181 IDKDVAHETVG--VKPSTLVPKEIPMIKKKNPVFQFKIAPKV--VHDGKQEGK------- 240
           I K  +H   G  ++P+ +  +   + +KK    +F I+ +V  + +G  + +       
Sbjct: 277 IPKPDSHGPSGPVLQPADVFEQPHALGQKK---IEFHISSEVSAILEGPGQNQKLPFADA 336

Query: 241 -EDDINNEV---------------------EETEKEAADLKS-YATLEDLERGKLPPEEI 300
            ED  + EV                     EE ++E  D+ S + +  +LERG+L  +EI
Sbjct: 337 TEDTPDMEVSAQETTEGFGKIYPSAQVPRQEEEQEEDEDIPSEFISRRELERGRLSRDEI 396

Query: 301 LSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFG-GIDEAKSALTVKLMQEGR 356
             L +FK Y  G PT  LY+KN+AK V   DL +I+G       +E ++   + LM+EGR
Sbjct: 397 KKLSVFKKYEPGEPTCRLYVKNVAKHVEEKDLKFIYGRYIDISSEEERNMFDIVLMKEGR 456

[Close]
BLAST of Csor.00g250150 vs. ExPASy Swiss-Prot
Match: Q5R6C7 (RNA-binding region-containing protein 3 OS=Pongo abelii OX=9601 GN=RNPC3 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.8e-37
Identity = 131/398 (32.91%), Postives = 199/398 (50.00%), Query Frame = 0 

Query: 13  DHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPR 72
           D  ++D  E      L     IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+
Sbjct: 122 DDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPK 181

Query: 73  FYTQVLHLMNKMNIPAPF-----RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QIT 132
           FY QVLHLMNKMN+P PF     R P+    +P   P PP+S    P PP   P P +  
Sbjct: 182 FYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLHAPLPPTS----PQPPEEPPLPEEDE 241

Query: 133 NVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRC---EAIVGPGIDKDVAHETVGV 192
            +SS+ESE ES++++   + N   + + A    KR +      +      KD+ +  +  
Sbjct: 242 ELSSEESEYESTDDEDRQRMNK--LMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCP 301

Query: 193 KPSTLVPKEIP--MIKKKNPV----FQFKIAPKV----VHDGKQEGKEDDINNEVEETEK 252
             S+L P  +P  +  +  PV     +F I+  +      D ++E   ++ N+++  TE 
Sbjct: 302 SHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEV 361

Query: 253 EAADL-------------------------KSYATLEDLERGKLPPEEILSLPMFKNYTA 312
           +A+++                             +  +LE+G++  EE+ +L +F++Y  
Sbjct: 362 DASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEP 421

Query: 313 GSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPS 366
           G P   +Y+KNLAK V   DL YIFG       E +  +  ++LM+EGRM+GQAFV LP+
Sbjct: 422 GEPNCRIYVKNLAKHVEEKDLKYIFGRYVDFSSETRRIMFDIRLMKEGRMKGQAFVGLPN 481

[Close]
BLAST of Csor.00g250150 vs. ExPASy Swiss-Prot
Match: Q96LT9 (RNA-binding region-containing protein 3 OS=Homo sapiens OX=9606 GN=RNPC3 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.8e-37
Identity = 130/398 (32.66%), Postives = 199/398 (50.00%), Query Frame = 0 

Query: 13  DHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPR 72
           D  ++D  E      L     IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+
Sbjct: 122 DDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPK 181

Query: 73  FYTQVLHLMNKMNIPAPF-----RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QIT 132
           FY QVLHLMNKMN+P PF     R P+    +P   P PP+S    P PP   P P +  
Sbjct: 182 FYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLHAPLPPTS----PQPPEEPPLPDEDE 241

Query: 133 NVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRC---EAIVGPGIDKDVAHETVGV 192
            +SS+ESE ES++++   + N   + + A    KR +      +      KD+ +  +  
Sbjct: 242 ELSSEESEYESTDDEDRQRMNK--LMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCP 301

Query: 193 KPSTLVPKEIP--MIKKKNPV----FQFKIAPKV----VHDGKQEGKEDDINNEVEETEK 252
             S+L P  +P  +  +  PV     +F I+  +      D ++E   ++ N+++  TE 
Sbjct: 302 SHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEV 361

Query: 253 EAADL-------------------------KSYATLEDLERGKLPPEEILSLPMFKNYTA 312
           +A+++                             +  +LE+G++  EE+ +L +F++Y  
Sbjct: 362 DASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEP 421

Query: 313 GSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPS 366
           G P   +Y+KNLAK V   DL YIFG       E +  +  ++LM+EGRM+GQAF+ LP+
Sbjct: 422 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPN 481

[Close]
BLAST of Csor.00g250150 vs. ExPASy Swiss-Prot
Match: Q4G055 (RNA-binding region-containing protein 3 OS=Rattus norvegicus OX=10116 GN=Rnpc3 PE=1 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 6.3e-37
Identity = 131/395 (33.16%), Postives = 190/395 (48.10%), Query Frame = 0 

Query: 13  DHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPR 72
           D  +++  E      L     IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+
Sbjct: 122 DDTVENDKEKKEPDVLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPK 181

Query: 73  FYTQVLHLMNKMNIPAPFRLPLPTP-----------PLPPSVPAPPSSLTLPPLPPPATP 132
           FY QVLHLMNKMN+P PF      P           PLPP+ P PP     PPLP     
Sbjct: 182 FYVQVLHLMNKMNLPTPFGPITARPPMYEDYVQLHAPLPPTSPQPPEE---PPLP----- 241

Query: 133 RPQITNVSSDESEMESSEEDVEGKYNS-----------SGVSKTARSGNKRSRCEAIVGP 192
             +  ++SS ESE ESS+E+   + N                K      KR   + +  P
Sbjct: 242 -DEDEDLSSKESEYESSDEEDRQRMNKLMELANFQPKRPKTVKPRHVRKKRKIKDMLTVP 301

Query: 193 GIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVH------DGKQEGKE--- 252
                  H    + PS +  +  P+  KK    +F I+  V        + +Q  +E   
Sbjct: 302 SPASQSLHPV--LLPSDVFDQPQPVGNKK---IEFNISTNVPAALNKDLETEQNNEEKNS 361

Query: 253 -------DDIN------------NEVEETEKEAADLKS-YATLEDLERGKLPPEEILSLP 312
                  DD N            N  EE ++++ ++ S + +  +LE+G++  EE+ +L 
Sbjct: 362 DSPDTGLDDSNTGFGKLFPKPNVNITEEIKEDSDEMPSQFISRRELEKGRISREEMETLS 421

Query: 313 MFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQ 356
           +F++Y  G P   +Y+KNLA+ V   DL +IFG       E +  +  ++LM+EGRM+GQ
Sbjct: 422 VFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQ 481

[Close]
BLAST of Csor.00g250150 vs. NCBI nr
Match: KAG6597718.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 709 bits (1829), Expect = 3.80e-257
Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0 

Query: 1   MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120

Query: 121 PRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180
           PRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Sbjct: 121 PRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180

Query: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLKS 240
           VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLKS
Sbjct: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLKS 240

Query: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300
           YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI
Sbjct: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300

Query: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 360
           DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK
Sbjct: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 360

Query: 361 GVKVGS 366
           GVKVGS
Sbjct: 361 GVKVGS 366

[Close]
BLAST of Csor.00g250150 vs. NCBI nr
Match: XP_022932769.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita moschata] >XP_022932770.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita moschata] >XP_022932771.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita moschata])

HSP 1 Score: 697 bits (1799), Expect = 1.42e-252
Identity = 361/366 (98.63%), Postives = 363/366 (99.18%), Query Frame = 0 

Query: 1   MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           MDDAAIKDCTPKDHR KDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120

Query: 121 PRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180
           PRPQITN+SSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Sbjct: 121 PRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180

Query: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLKS 240
           VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHD KQEGKEDDINNEVEETEKEAADLKS
Sbjct: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLKS 240

Query: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300
           YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI
Sbjct: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300

Query: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 360
           DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQ ALNLVNGYVFKGKPMIIQFGR+PGAAK
Sbjct: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQQALNLVNGYVFKGKPMIIQFGRSPGAAK 360

Query: 361 GVKVGS 366
           GVKVGS
Sbjct: 361 GVKVGS 366

[Close]
BLAST of Csor.00g250150 vs. NCBI nr
Match: XP_023540623.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo] >XP_023540624.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo] >XP_023540625.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 692 bits (1787), Expect = 8.25e-251
Identity = 358/361 (99.17%), Postives = 359/361 (99.45%), Query Frame = 0 

Query: 1   MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           MDDAAIKDCTPKDHR KDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120

Query: 121 PRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180
           PRPQITN+SSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Sbjct: 121 PRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180

Query: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLKS 240
           VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVV DGKQEGKEDDINNEVEETEKEAADLKS
Sbjct: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVIDGKQEGKEDDINNEVEETEKEAADLKS 240

Query: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300
           YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI
Sbjct: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300

Query: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 360
           DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK
Sbjct: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 360

[Close]
BLAST of Csor.00g250150 vs. NCBI nr
Match: XP_022972081.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima] >XP_022972082.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima] >XP_022972083.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima])

HSP 1 Score: 686 bits (1771), Expect = 2.26e-248
Identity = 355/361 (98.34%), Postives = 356/361 (98.61%), Query Frame = 0 

Query: 1   MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           MDDAAIKDC PKDHR KDHT GMRA PLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MDDAAIKDCMPKDHRSKDHTVGMRATPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120

Query: 121 PRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180
           PRPQITN+SSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Sbjct: 121 PRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180

Query: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLKS 240
           VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHD KQEGKEDDINNEVEETEKEAADLKS
Sbjct: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLKS 240

Query: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300
           YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI
Sbjct: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300

Query: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 360
           DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK
Sbjct: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 360

[Close]
BLAST of Csor.00g250150 vs. NCBI nr
Match: XP_038903908.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Benincasa hispida])

HSP 1 Score: 620 bits (1598), Expect = 4.00e-222
Identity = 323/361 (89.47%), Postives = 337/361 (93.35%), Query Frame = 0 

Query: 1   MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+DAAIKD   KDHR KDHTE MRARPLHFGEPIAARLGVDYPFPPHL YAYPPPDGNIL
Sbjct: 1   MEDAAIKDAISKDHRSKDHTESMRARPLHFGEPIAARLGVDYPFPPHLGYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS+PA PS   LPPLPPPAT
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAQPS---LPPLPPPAT 120

Query: 121 PRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180
           PRPQ+TN+SSDESEMESSEEDV+GKYNSSGVSKTA+SG+KRSRCE IVGPGIDK+VAHE 
Sbjct: 121 PRPQVTNMSSDESEMESSEEDVDGKYNSSGVSKTAKSGDKRSRCETIVGPGIDKNVAHEA 180

Query: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLKS 240
           VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+HDGK     D+INN+ EETEKEA DLK 
Sbjct: 181 VGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKV----DNINNDCEETEKEANDLKP 240

Query: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300
           YATLEDLERGKLPPEEILSLPMFKNYTAG+PTSVLYIKNLAKDV+NDDLYYIFGSLF GI
Sbjct: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGNPTSVLYIKNLAKDVLNDDLYYIFGSLFEGI 300

Query: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 360
           DEAKSALTVKLMQEGRMRGQAFVT PSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK
Sbjct: 301 DEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 354

[Close]
BLAST of Csor.00g250150 vs. ExPASy TrEMBL
Match: A0A6J1EXB4 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111439218 PE=4 SV=1)

HSP 1 Score: 697 bits (1799), Expect = 6.88e-253
Identity = 361/366 (98.63%), Postives = 363/366 (99.18%), Query Frame = 0 

Query: 1   MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           MDDAAIKDCTPKDHR KDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120

Query: 121 PRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180
           PRPQITN+SSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Sbjct: 121 PRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180

Query: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLKS 240
           VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHD KQEGKEDDINNEVEETEKEAADLKS
Sbjct: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLKS 240

Query: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300
           YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI
Sbjct: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300

Query: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 360
           DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQ ALNLVNGYVFKGKPMIIQFGR+PGAAK
Sbjct: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQQALNLVNGYVFKGKPMIIQFGRSPGAAK 360

Query: 361 GVKVGS 366
           GVKVGS
Sbjct: 361 GVKVGS 366

[Close]
BLAST of Csor.00g250150 vs. ExPASy TrEMBL
Match: A0A6J1I4Z6 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111470724 PE=4 SV=1)

HSP 1 Score: 686 bits (1771), Expect = 1.10e-248
Identity = 355/361 (98.34%), Postives = 356/361 (98.61%), Query Frame = 0 

Query: 1   MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           MDDAAIKDC PKDHR KDHT GMRA PLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MDDAAIKDCMPKDHRSKDHTVGMRATPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 120

Query: 121 PRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180
           PRPQITN+SSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Sbjct: 121 PRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET 180

Query: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLKS 240
           VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHD KQEGKEDDINNEVEETEKEAADLKS
Sbjct: 181 VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLKS 240

Query: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300
           YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI
Sbjct: 241 YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI 300

Query: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 360
           DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK
Sbjct: 301 DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 360

[Close]
BLAST of Csor.00g250150 vs. ExPASy TrEMBL
Match: A0A1S3BJY8 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490451 PE=4 SV=1)

HSP 1 Score: 604 bits (1558), Expect = 2.78e-216
Identity = 319/362 (88.12%), Postives = 329/362 (90.88%), Query Frame = 0 

Query: 1   MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+DAAIK    KDH  +DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS PAPPS SLTLPPLPPPA
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPA 120

Query: 121 TPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TN+ SDESEMESSEEDVEGKYNSSGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TSRSQVTNMPSDESEMESSEEDVEGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+HDGK     D  NN+ E  EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKV----DKTNNDGEGAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGG 300
            YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDV+NDDLYYIFGSLF G
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 IDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAA 360
           IDEAKSALTVKLMQEGRMRGQAFVT PS+ELAQ ALNLVNGYVFKGKPMIIQFGRNPGA 
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIELAQLALNLVNGYVFKGKPMIIQFGRNPGAV 358

[Close]
BLAST of Csor.00g250150 vs. ExPASy TrEMBL
Match: A0A6J1DFW4 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020131 PE=4 SV=1)

HSP 1 Score: 603 bits (1554), Expect = 1.09e-215
Identity = 318/362 (87.85%), Postives = 330/362 (91.16%), Query Frame = 0 

Query: 1   MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           MD A+ K    KDH  KDHTEGMRARPLH  EPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MDGASTKHGMAKDHMSKDHTEGMRARPLHVTEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPP P P 
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPPPLPT 120

Query: 121 TPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           TPRP +TN+SSDESEMESSEE+VEGKY+SSGVSKTA+ GNKRSRCE IVGPGIDKDVAHE
Sbjct: 121 TPRPHVTNMSSDESEMESSEEEVEGKYHSSGVSKTAKLGNKRSRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPS LVPKEIPMIKK NPVFQ KI PKV+HDGK    +D INNE+EE EKE  DLK
Sbjct: 181 AVGVKPSPLVPKEIPMIKK-NPVFQIKIVPKVIHDGK----DDTINNELEEPEKEEPDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGG 300
            YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGG
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGG 300

Query: 301 IDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAA 360
           ID+AKSALTVKLMQEGRMRGQAFVT PS+ELAQHALNLVNGYVFKGKPMIIQFGRNPGAA
Sbjct: 301 IDDAKSALTVKLMQEGRMRGQAFVTFPSIELAQHALNLVNGYVFKGKPMIIQFGRNPGAA 357

[Close]
BLAST of Csor.00g250150 vs. ExPASy TrEMBL
Match: A0A0A0KCT1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G118290 PE=4 SV=1)

HSP 1 Score: 554 bits (1427), Expect = 2.28e-196
Identity = 292/336 (86.90%), Postives = 305/336 (90.77%), Query Frame = 0 

Query: 1   MDDAAIKDCTPKDHRIKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+ AAIKD   KDH  +DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPPLPPP 
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 121 TPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TN+ SDESEMESSEEDVEGKYN SGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+HDGK      +INN+ EE EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKV----GNINNDGEEAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGG 300
            YATLEDLERGKLPPEEILSLPMFKNYTAG+PTSVLYIKNLAKDV+NDDLYYIFGSLF G
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 IDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHAL 335
           IDEAKSALTVKLMQEGRMRGQAFVT PS+ELAQ AL
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIELAQRAL 332

[Close]
BLAST of Csor.00g250150 vs. TAIR 10
Match: AT1G09230.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 371.3 bits (952), Expect = 8.8e-103
Identity = 202/330 (61.21%), Postives = 243/330 (73.64%), Query Frame = 0 

Query: 31  GEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 90
           GEPIA +LG+DYPFPPHL+YAYPPPD NIL NI NALIAVP  YTQVLHLMNKMN+P PF
Sbjct: 139 GEPIAPKLGIDYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMNLPPPF 198

Query: 91  RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSG 150
           RL LPTPPLP + P                 +  + + SS ESEMES E+          
Sbjct: 199 RLALPTPPLPKAGP----------------QQTDLEHQSSSESEMESDED---------- 258

Query: 151 VSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPK 210
              T++SG KR+R   +VG G+DKDV HETVGVKPS+L PKEIP I+K   V Q KI  K
Sbjct: 259 -IGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHVMQIKITSK 318

Query: 211 VVHDGKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGS 270
           V  D  +E  E++  +  +E +++ ++LK +A+LE+LE+G+LPP++ILSLPMFKNYTAG+
Sbjct: 319 VTQDEYKEESENE--DPADEPKEKDSNLKPFASLEELEKGRLPPQDILSLPMFKNYTAGN 378

Query: 271 PTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVEL 330
           P+ VLYIKNLAKDVV DD YYIFGS F   + AKS+L V+LMQEGRMRGQAF+T PSVE+
Sbjct: 379 PSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEV 438

Query: 331 AQHALNLVNGYVFKGKPMIIQFGRNPGAAK 361
           A  ALNLVNG+VFKGKPMIIQFGR PGAAK
Sbjct: 439 AHRALNLVNGFVFKGKPMIIQFGRTPGAAK 439

[Close]
BLAST of Csor.00g250150 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 45.8 bits (107), Expect = 8.5e-05
Identity = 28/87 (32.18%), Postives = 45/87 (51.72%), Query Frame = 0 

Query: 271 PTSVLYIKNLAKDVVNDDL---YYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPS 330
           P   +YI+NL + +  ++L    Y   S FG I      L V  ++  ++RGQA+VT   
Sbjct: 8   PNQSIYIQNLNERIKKEELKRSLYCLFSQFGRI------LDVVALKTPKLRGQAWVTFSE 67

Query: 331 VELAQHALNLVNGYVFKGKPMIIQFGR 355
           V  A HA+  +  + F  KPM +Q+ +
Sbjct: 68  VTAAGHAVRQMQNFPFYDKPMRLQYAK 88

The following BLAST results are available for this feature:
BLAST of Csor.00g250150 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8RWV81.2e-10161.21U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana O... [more]
F1Q8J05.7e-3834.09RNA-binding region-containing protein 3 OS=Danio rerio OX=7955 GN=rnpc3 PE=2 SV=... [more]
Q5R6C72.8e-3732.91RNA-binding region-containing protein 3 OS=Pongo abelii OX=9601 GN=RNPC3 PE=2 SV... [more]
Q96LT94.8e-3732.66RNA-binding region-containing protein 3 OS=Homo sapiens OX=9606 GN=RNPC3 PE=1 SV... [more]
Q4G0556.3e-3733.16RNA-binding region-containing protein 3 OS=Rattus norvegicus OX=10116 GN=Rnpc3 P... [more]
BLAST of Csor.00g250150 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6597718.13.80e-257100.00U11/U12 small nuclear ribonucleoprotein 65 kDa protein, partial [Cucurbita argyr... [more]
XP_022932769.11.42e-25298.63U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita moschata] >XP_... [more]
XP_023540623.18.25e-25199.17U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pe... [more]
XP_022972081.12.26e-24898.34U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima] >XP_02... [more]
XP_038903908.14.00e-22289.47U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Benincasa hispida][more]
BLAST of Csor.00g250150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EXB46.88e-25398.63U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita moschata OX=... [more]
A0A6J1I4Z61.10e-24898.34U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita maxima OX=36... [more]
A0A1S3BJY82.78e-21688.12U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 OS=Cucumis mel... [more]
A0A6J1DFW41.09e-21587.85U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 OS=Momordica c... [more]
A0A0A0KCT12.28e-19686.90RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G118290 PE=4 SV... [more]
BLAST of Csor.00g250150 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G09230.18.8e-10361.21RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G30260.18.5e-0532.18U2 small nuclear ribonucleoprotein B [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 221..241
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..162
NoneNo IPR availablePANTHERPTHR16105:SF0RNA-BINDING REGION-CONTAINING PROTEIN 3coord: 22..360
NoneNo IPR availablePANTHERPTHR16105UNCHARACTERIZEDcoord: 22..360
NoneNo IPR availableCDDcd12239RRM2_RBM40_likecoord: 272..353
e-value: 3.96146E-41
score: 137.31
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 274..351
e-value: 4.9E-11
score: 52.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 275..347
e-value: 9.7E-11
score: 41.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 273..355
score: 14.538761
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 267..362
e-value: 1.1E-18
score: 69.3
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 253..357

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g250150.m01Csor.00g250150.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding