Csor.00g250070 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g250070
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr06: 11518592 .. 11519406 (-)
RNA-Seq ExpressionCsor.00g250070
SyntenyCsor.00g250070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTTCAGAAGAACAAATTGGATTCTCAATTCGGTGTGTTATATTGTATGATATTATATTATGCACATGTGTTGTGGGTATGACTAATCTACCAAAAACTGATTTCCAATGCAGATAATTAAGCCCTCCATTTGATGCGAATCTTAGTCTTATAAGCAAGGTGGAAGGGGTAGGCGGATCTGGTCCACGCCAACGCCGCGGCAGGGTTCAGCGGCGGCTTTAAAAGAGACGGAAATGGGTTGCCCTTGTTGAAGCGAAACGGCGAACTCCCTTTCTTTTCACCCTCCCGAATGGTCTCCAGCTTTGGCTTCCATTGGCGCCTGTATACGAGGCGGGTGTAGTCCTTAGCCAATTGCGGCGTGGTGCAGATTCTGCCGAGTGGCTCTTGGAGTTTGGGGTTGCCCTGTTGGAGCAATCCGGAAATGAAGTCGTCGGAGAGATGGATTCGAAGGCAGCCGGAGGGGGTCCGTTGGATGTCGAAGGGGGTGTGGATTTTGTTGTTGGTGGAAGAGGAGAAAAAGGAAGCGACGGTGAGGAAGGAGAGAACGGAGTGGAAAAAATGGTTGGGGAGGAGGAAGTAGTTATGGCCGAGCTGGAGGTGGTGGTGGGGGGAAAGGGGAGGGATCTTGTGGCCGATGTAGAAGGAGTCGGCTCGGCAGATGAGATGAAAAGGGAAGTCGAGCAAGACATCAGAGACGCGGATGGGGCGGAGGTAGATTCGAACATGGCCGTCGGGGAGAATGAGGTTGATGTTGTTGTGATGGGGGAGATGGAAACGAGGGCAGGAAGGCATGTTGGAATGAATGAATGA

mRNA sequence

ATGGGGTTTCAGAAGAACAAATTGGATTCTCAATTCGGTGTGTTATATTCGAAACGGCGAACTCCCTTTCTTTTCACCCTCCCGAATGGTCTCCAGCTTTGGCTTCCATTGGCGCCTGTATACGAGGCGGGTGTAGTCCTTAGCCAATTGCGGCGTGGTGCAGATTCTGCCGAGTGGCTCTTGGAGTTTGGGGTTGCCCTGTTGGAGCAATCCGGAAATGAAGTCGTCGGAGAGATGGATTCGAAGGCAGCCGGAGGGGGTCCGTTGGATGTCGAAGGGGGTGTGGATTTTGTTGTTGGTGGAAGAGGAGAAAAAGGAAGCGACGGTGAGGAAGGAGAGAACGGAGTGGAAAAAATGGTTGGGGAGGAGGAAGTAGTTATGGCCGAGCTGGAGGTGGTGGTGGGGGGAAAGGGGAGGGATCTTGTGGCCGATGTAGAAGGAGTCGGCTCGGCAGATGAGATGAAAAGGGAAGTCGAGCAAGACATCAGAGACGCGGATGGGGCGGAGGTAGATTCGAACATGGCCGTCGGGGAGAATGAGGTTGATGTTGTTGTGATGGGGGAGATGGAAACGAGGGCAGGAAGGCATGTTGGAATGAATGAATGA

Coding sequence (CDS)

ATGGGGTTTCAGAAGAACAAATTGGATTCTCAATTCGGTGTGTTATATTCGAAACGGCGAACTCCCTTTCTTTTCACCCTCCCGAATGGTCTCCAGCTTTGGCTTCCATTGGCGCCTGTATACGAGGCGGGTGTAGTCCTTAGCCAATTGCGGCGTGGTGCAGATTCTGCCGAGTGGCTCTTGGAGTTTGGGGTTGCCCTGTTGGAGCAATCCGGAAATGAAGTCGTCGGAGAGATGGATTCGAAGGCAGCCGGAGGGGGTCCGTTGGATGTCGAAGGGGGTGTGGATTTTGTTGTTGGTGGAAGAGGAGAAAAAGGAAGCGACGGTGAGGAAGGAGAGAACGGAGTGGAAAAAATGGTTGGGGAGGAGGAAGTAGTTATGGCCGAGCTGGAGGTGGTGGTGGGGGGAAAGGGGAGGGATCTTGTGGCCGATGTAGAAGGAGTCGGCTCGGCAGATGAGATGAAAAGGGAAGTCGAGCAAGACATCAGAGACGCGGATGGGGCGGAGGTAGATTCGAACATGGCCGTCGGGGAGAATGAGGTTGATGTTGTTGTGATGGGGGAGATGGAAACGAGGGCAGGAAGGCATGTTGGAATGAATGAATGA

Protein sequence

MGFQKNKLDSQFGVLYSKRRTPFLFTLPNGLQLWLPLAPVYEAGVVLSQLRRGADSAEWLLEFGVALLEQSGNEVVGEMDSKAAGGGPLDVEGGVDFVVGGRGEKGSDGEEGENGVEKMVGEEEVVMAELEVVVGGKGRDLVADVEGVGSADEMKREVEQDIRDADGAEVDSNMAVGENEVDVVVMGEMETRAGRHVGMNE
Homology
[Close]
BLAST of Csor.00g250070 vs. NCBI nr
Match: KAG6597726.1 (hypothetical protein SDJN03_10906, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 383 bits (984), Expect = 7.14e-134
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0 

Query: 1   MGFQKNKLDSQFGVLYSKRRTPFLFTLPNGLQLWLPLAPVYEAGVVLSQLRRGADSAEWL 60
           MGFQKNKLDSQFGVLYSKRRTPFLFTLPNGLQLWLPLAPVYEAGVVLSQLRRGADSAEWL
Sbjct: 1   MGFQKNKLDSQFGVLYSKRRTPFLFTLPNGLQLWLPLAPVYEAGVVLSQLRRGADSAEWL 60

Query: 61  LEFGVALLEQSGNEVVGEMDSKAAGGGPLDVEGGVDFVVGGRGEKGSDGEEGENGVEKMV 120
           LEFGVALLEQSGNEVVGEMDSKAAGGGPLDVEGGVDFVVGGRGEKGSDGEEGENGVEKMV
Sbjct: 61  LEFGVALLEQSGNEVVGEMDSKAAGGGPLDVEGGVDFVVGGRGEKGSDGEEGENGVEKMV 120

Query: 121 GEEEVVMAELEVVVGGKGRDLVADVEGVGSADEMKREVEQDIRDADGAEVDSNMAVGENE 180
           GEEEVVMAELEVVVGGKGRDLVADVEGVGSADEMKREVEQDIRDADGAEVDSNMAVGENE
Sbjct: 121 GEEEVVMAELEVVVGGKGRDLVADVEGVGSADEMKREVEQDIRDADGAEVDSNMAVGENE 180

Query: 181 VDVVVMGEMETRAGRHVGMNE 201
           VDVVVMGEMETRAGRHVGMNE
Sbjct: 181 VDVVVMGEMETRAGRHVGMNE 201

The following BLAST results are available for this feature:
BLAST of Csor.00g250070 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g250070 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6597726.17.14e-134100.00hypothetical protein SDJN03_10906, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g250070 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g250070 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 151..171

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g250070.m01Csor.00g250070.m01mRNA