Csor.00g249840 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g249840
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	glycine-rich RNA-binding protein-like
Location	Csor_Chr02: 2053534 .. 2054342 (-)
RNA-Seq Expression	Csor.00g249840
Synteny	Csor.00g249840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGGTCCGTTTGTCATCGTCGAGATCTGGATTTGTTCCGATTCGGCTTTGACGATCCTAAATCTGATCTGTGACTCTCATCTGTTTTGTGTTACTTTACTACTACTACTACTCTCTTGATATGTTACTTTTATTACTCTCCTTTCATCGGTACGTTTACCTTCATCTTGGTTACAGAGACGAAGAACGATCGATTTTTCTTTAATTTTCATTCTTCTTTTCATTTTTGTTCCAGTTTGCCTCAATTGTTGTGGTTCTGTGACTCATCTTTGTTTTCTTGTGATAATTGTTATCCAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACGTTTGTGGATGAAGAGGCCATGAGAAGCGCAATCGAAGCGATGAACGGCCAGAACCTTGATGGACGGAGTATCACCGTTAACGAGGCTCAGCAAAGAGGCGGCGGCGGCGGCGGCGGTGGTTACAACCGTGGTGGAGGTGGTGGTGGTGGTTACGGTGGACGCCGTGAAGGAGGTGGTGGTGGATACAACCGCGGAGGCGGTGGTTACGGTGGTGGTGGAGGTGGATACGGAGGTGGTGGTTATGGTGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGATGGTGGCCGCTACCAGAGAGGAGGTGGTGGTGGCGGTGGTGGATCTGAAGGAGGGTGGAGAAATTAG

mRNA sequence

ATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACGTTTGTGGATGAAGAGGCCATGAGAAGCGCAATCGAAGCGATGAACGGCCAGAACCTTGATGGACGGAGTATCACCGTTAACGAGGCTCAGCAAAGAGGCGGCGGCGGCGGCGGCGGTGGTTACAACCGTGGTGGAGGTGGTGGTGGTGGTTACGGTGGACGCCGTGAAGGAGGTGGTGGTGGATACAACCGCGGAGGCGGTGGTTACGGTGGTGGTGGAGGTGGATACGGAGGTGGTGGTTATGGTGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGATGGTGGCCGCTACCAGAGAGGAGGTGGTGGTGGCGGTGGTGGATCTGAAGGAGGGTGGAGAAATTAG

Coding sequence (CDS)

ATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACGTTTGTGGATGAAGAGGCCATGAGAAGCGCAATCGAAGCGATGAACGGCCAGAACCTTGATGGACGGAGTATCACCGTTAACGAGGCTCAGCAAAGAGGCGGCGGCGGCGGCGGCGGTGGTTACAACCGTGGTGGAGGTGGTGGTGGTGGTTACGGTGGACGCCGTGAAGGAGGTGGTGGTGGATACAACCGCGGAGGCGGTGGTTACGGTGGTGGTGGAGGTGGATACGGAGGTGGTGGTTATGGTGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGATGGTGGCCGCTACCAGAGAGGAGGTGGTGGTGGCGGTGGTGGATCTGAAGGAGGGTGGAGAAATTAG

Protein sequence

MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGGGSEGGWRN

Homology

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BLAST of Csor.00g249840 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-35
Identity = 121/177 (68.36%), Postives = 134/177 (75.71%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGG-------GGGGGGYNRGGGGGGGYGGRREGG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG        GGGGGGY  GGGGG   GG   GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYNRGGGGYGGGGGGY-----GGGGYGGGRDRGYGG-GGGDGGRYQRGGGGGGGG 165
           GGG   GGGGY GGGGGY     GGG YGGGR  G GG GGG+GG Y  GG GGGGG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGY--GGSGGGGG 175

[Close]

BLAST of Csor.00g249840 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-35
Identity = 120/176 (68.18%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MA++ VEYRCFVGGLAWAT+N  LE+AF++FG+++++K++ DRETGRSRGFGFVTF  E+
Sbjct: 1   MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           +M  AIE MNG+ LDGR+ITVN+AQ RGGGGGGGGY   GGGGGGYGGR    GGGY  G
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGY---GGGGGGYGGRE---GGGYGGG 120

Query: 121 GGGYGG---GGGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGG--GGSEGGWRN 172
           GGGYGG   GGGGYGGGGYGGG   GYGG  G GG Y  GGG GG  G S G WRN
Sbjct: 121 GGGYGGRREGGGGYGGGGYGGG-GGGYGGREGGGG-YGGGGGYGGNRGDSGGNWRN 168

[Close]

BLAST of Csor.00g249840 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.6e-35
Identity = 123/171 (71.93%), Postives = 134/171 (78.36%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD+ ALE AFS +GE++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG    G GGGGGY   R GGGGGY  G
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG----GRGGGGGY---RSGGGGGYGGG 120

Query: 121 GGGYGGGG--GGYGGGGYGGGRDRGYGGGG-GDGGRYQRGGGGGGGGSEGG 169
           GGGYGGGG  GGY GGG GG   RG GGGG G GGR   G GGG GGS GG
Sbjct: 121 GGGYGGGGREGGYSGGG-GGYSSRGGGGGGYGGGGRRDGGEGGGYGGSGGG 163

[Close]

BLAST of Csor.00g249840 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.0e-35
Identity = 113/159 (71.07%), Postives = 126/159 (79.25%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMR 63
           + VEYRCFVGGLAWAT++ +LE+AFS FG+I ++KI+NDRETGRSRGFGFVTF DE++MR
Sbjct: 2   AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGG---GGGGGYGGRREGGGGG---- 123
            AIE MNGQ LDGR+ITVNEAQ RG GGGGG    GG   GGGGGYGGRREGGGGG    
Sbjct: 62  DAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGYGG 121

Query: 124 -YNRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGRY 155
               GGGGYGGGGGGYGG   GG  D GYGGGGG G R+
Sbjct: 122 RREGGGGGYGGGGGGYGGRREGG--DGGYGGGGG-GSRW 157

[Close]

BLAST of Csor.00g249840 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.0e-35
Identity = 123/171 (71.93%), Postives = 133/171 (77.78%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD  +LE AFS FGE+V++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGG--GGGGYGGRREGGGGGYN 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG G GGGG   GGG  GGGGYGG   G GGG  
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYGGG-R 120

Query: 121 RGGGGYGGGGGGY-----GGGGYGGGRDRGYGG-GGGDGGRYQRGGGGGGG 164
           R GGGY GGGGGY     GGGGYGGG  R  GG GGG+GG Y  GGGGGGG
Sbjct: 121 REGGGYSGGGGGYSSRGGGGGGYGGGGRRDGGGYGGGEGGGY--GGGGGGG 168

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BLAST of Csor.00g249840 vs. NCBI nr
Match: KAG6605080.1 (hypothetical protein SDJN03_02397, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273 bits (697), Expect = 4.15e-91
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGGGSEGGWRN 171
           GGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGGGSEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGGGSEGGWRN 171

[Close]

BLAST of Csor.00g249840 vs. NCBI nr
Match: XP_023533100.1 (glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533101.1 glycine-rich RNA-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267 bits (683), Expect = 5.45e-89
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGGGSEGGWRN 171
           GGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGG SEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGG-SEGGWRN 170

[Close]

BLAST of Csor.00g249840 vs. NCBI nr
Match: XP_022947194.1 (glycine-rich RNA-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 263 bits (671), Expect = 3.79e-87
Identity = 170/172 (98.84%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGG-DGGRYQRGGGGGGGGSEGGWRN 171
           GGGYGGGGGGYGGGGYGGGRDRGYGGGGG DGGRYQRGGGGGGG SEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGG-SEGGWRN 171

[Close]

BLAST of Csor.00g249840 vs. NCBI nr
Match: XP_023006868.1 (glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 249 bits (635), Expect = 1.28e-81
Identity = 170/175 (97.14%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGG-YNRGGGGGGGYGGRREGGGGG-YN 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGG YNRGGGGGGGYGGRREGGGGG YN
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGG-YGGGRDRGYGGGGG-DGGRYQRGGGGGGGGSEGGWRN 171
           RGGGGYGGGGGGYGGGG YGGGRDRGYGGGGG DGGRYQRGGGGGGG SEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGG-SEGGWRN 174

[Close]

BLAST of Csor.00g249840 vs. NCBI nr
Match: XP_023512522.1 (glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241 bits (614), Expect = 1.70e-78
Identity = 163/173 (94.22%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF +EE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGG YNRGGGGGGGYGGRREGGGGGYNRG
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGG-YNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GGGYGGGGGGYGGGGYGGG-RDRGYGGGGGDGG-RYQRGGGGGGGGSEGGWRN 171
           GGGYGGGGGGYGGGGYGGG RDRGYGGG  DGG RY RGGGGGGG SEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGYGGGGRDRGYGGG--DGGSRYNRGGGGGGG-SEGGWRN 169

[Close]

BLAST of Csor.00g249840 vs. ExPASy TrEMBL
Match: A0A6J1G631 (glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451139 PE=4 SV=1)

HSP 1 Score: 263 bits (671), Expect = 1.84e-87
Identity = 170/172 (98.84%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGG-DGGRYQRGGGGGGGGSEGGWRN 171
           GGGYGGGGGGYGGGGYGGGRDRGYGGGGG DGGRYQRGGGGGGG SEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGG-SEGGWRN 171

[Close]

BLAST of Csor.00g249840 vs. ExPASy TrEMBL
Match: A0A6J1L652 (glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 249 bits (635), Expect = 6.18e-82
Identity = 170/175 (97.14%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGG-YNRGGGGGGGYGGRREGGGGG-YN 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGG YNRGGGGGGGYGGRREGGGGG YN
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGG-YGGGRDRGYGGGGG-DGGRYQRGGGGGGGGSEGGWRN 171
           RGGGGYGGGGGGYGGGG YGGGRDRGYGGGGG DGGRYQRGGGGGGG SEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGG-SEGGWRN 174

[Close]

BLAST of Csor.00g249840 vs. ExPASy TrEMBL
Match: A0A6J1FRL7 (glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448177 PE=4 SV=1)

HSP 1 Score: 240 bits (612), Expect = 1.90e-78
Identity = 163/174 (93.68%), Postives = 166/174 (95.40%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFV+E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGG-YGGRREGGGGG-YN 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGG YNRGGGGGGG YGGRREGGGGG YN
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGG-YNRGGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGGG-SEGGWRN 171
           RGGGGYGGGGGGYGGGGYGGGRDRGYGGGG  G RY RGGGGGGGG SEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 173

[Close]

BLAST of Csor.00g249840 vs. ExPASy TrEMBL
Match: A0A6J1JGK0 (glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111484309 PE=4 SV=1)

HSP 1 Score: 233 bits (594), Expect = 9.76e-76
Identity = 161/177 (90.96%), Postives = 164/177 (92.66%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFV+E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGG---YGGRREGGGGGY 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGG YNRGGGGGGG   YGGRREGGGGGY
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGG-YNRGGGGGGGGGGYGGRREGGGGGY 120

Query: 121 NRGGGGYG--GGGGGYGGGGYGGGRDRGYGGGGGDGG-RYQRGGGGGGGGSEGGWRN 171
           NRGGGGYG  GGGGGYGGGGYGGGRDRGYGGG  DGG RY RGGGGG   SEGGWRN
Sbjct: 121 NRGGGGYGSGGGGGGYGGGGYGGGRDRGYGGG--DGGSRYNRGGGGG---SEGGWRN 171

[Close]

BLAST of Csor.00g249840 vs. ExPASy TrEMBL
Match: A0A6J1L3C8 (glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 222 bits (566), Expect = 1.08e-71
Identity = 153/174 (87.93%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGG-YNRGGGGGGGYGGRREGGGGGYNR 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGG YNRGGGGGGG              
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGG-------------- 120

Query: 121 GGGGYGGGGGGYGGGG-YGGGRDRGYGGGGG-DGGRYQRGGGGGGGGSEGGWRN 171
              GYGGGGGGYGGGG YGGGRDRGYGGGGG DGGRYQRGGGGGGG SEGGWRN
Sbjct: 121 ---GYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGG-SEGGWRN 156

[Close]

BLAST of Csor.00g249840 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 151.0 bits (380), Expect = 8.8e-37
Identity = 121/177 (68.36%), Postives = 134/177 (75.71%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGG-------GGGGGGYNRGGGGGGGYGGRREGG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG        GGGGGGY  GGGGG   GG   GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYNRGGGGYGGGGGGY-----GGGGYGGGRDRGYGG-GGGDGGRYQRGGGGGGGG 165
           GGG   GGGGY GGGGGY     GGG YGGGR  G GG GGG+GG Y  GG GGGGG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGY--GGSGGGGG 175

[Close]

BLAST of Csor.00g249840 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-36
Identity = 119/165 (72.12%), Postives = 134/165 (81.21%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG  +RGGG  GG GGRRE GGGGY+ G
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG--HRGGGSYGGGGGRRE-GGGGYSGG 120

Query: 121 GGGYGGGGGGYGGGGYGGGRDRGYGG-GGGDGGRYQRGGGGGGGG 165
           GGGY   GG  GGG YGGGR  G GG GGG+GG Y  GG GGGGG
Sbjct: 121 GGGYSSRGG--GGGSYGGGRREGGGGYGGGEGGGY--GGSGGGGG 158

[Close]

BLAST of Csor.00g249840 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 137.9 bits (346), Expect = 7.7e-33
Identity = 113/169 (66.86%), Postives = 126/169 (74.56%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMR 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF DE+AMR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGG-------GGGYNRGGGG---GGGYGGRREGG 123
            AIE MNG+ LDGR ITVNEAQ RG GGG       GGGY  GGGG   GGG GG   GG
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121

Query: 124 GGGYNRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGG 163
           GGGY R  GGYG GGGG G G  GGGR  G G GGGDGG Y  GGGGGG
Sbjct: 122 GGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSY--GGGGGG 168

[Close]

BLAST of Csor.00g249840 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-32
Identity = 93/136 (68.38%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMR 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF DE+AMR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRGGGG 123
            AIE MNG+ LDGR ITVNEAQ RG GGGGGG    GG GGGY   R GGGGGY+     
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGG---RGGSGGGY---RSGGGGGYS----- 121

Query: 124 YGGGGGGYGGGGYGGG 140
            GGGGGGY GGG GGG
Sbjct: 122 -GGGGGGYSGGGGGGG 125

[Close]

BLAST of Csor.00g249840 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-17
Identity = 94/169 (55.62%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 9   RCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMRSAIEA 68
           + F+GG+A++ D  +L +AF+ +GE+V+ +++ DRETGRSRGFGFVTF   EA  SAI+A
Sbjct: 41  KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100

Query: 69  MNGQNLDGRSITVNEAQQR--GGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRGGGGYGG 128
           ++G++L GR + VN A  R  GGG GGGGY  GGGG GG GG   GG GGY  G GGYGG
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGFGGGGYGGGGGGYGGSGG-YGGGAGGYG-GSGGYGG 160

Query: 129 GGGGYG---GGGYGGGRDRGYGG---GGGDGGRYQRGGGGGGGGSEGGW 170
           G GGYG   GGGYGG    GYGG   GG  G     GG GGG GS GG+
Sbjct: 161 GAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGGF 207

The following BLAST results are available for this feature:

BLAST of Csor.00g249840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03250	1.2e-35	68.36	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
Q99070	1.6e-35	68.18	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
P49310	3.6e-35	71.93	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q03878	8.0e-35	71.07	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]
P49311	8.0e-35	71.93	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of Csor.00g249840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605080.1	4.15e-91	100.00	hypothetical protein SDJN03_02397, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023533100.1	5.45e-89	99.42	glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] ...	[more]
XP_022947194.1	3.79e-87	98.84	glycine-rich RNA-binding protein 1-like [Cucurbita moschata]	[more]
XP_023006868.1	1.28e-81	97.14	glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita maxima]	[more]
XP_023512522.1	1.70e-78	94.22	glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g249840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G631	1.84e-87	98.84	glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1L652	6.18e-82	97.14	glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FRL7	1.90e-78	93.68	glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1JGK0	9.76e-76	90.96	glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC11148430...	[more]
A0A6J1L3C8	1.08e-71	87.93	glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X2 OS=Cuc...	[more]

BLAST of Csor.00g249840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21660.1	8.8e-37	68.36	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.2	2.0e-36	72.12	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	7.7e-33	66.86	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	1.7e-32	68.38	cold, circadian rhythm, and RNA binding 1	[more]
AT5G61030.1	1.6e-17	55.62	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 2.0E-28 score: 110.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..79 e-value: 2.5E-23 score: 81.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 19.757713
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..107 e-value: 2.0E-31 score: 110.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..171
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..170
None	No IPR available	PANTHER	PTHR48024:SF22	RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED	coord: 1..170
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g249840.m01	Csor.00g249840.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006858	extracellular transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:1990428	miRNA transport
biological_process	GO:0050688	regulation of defense response to virus
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0030126	COPI vesicle coat
molecular_function	GO:0035198	miRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0035197	siRNA binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0003676	nucleic acid binding